Wall clock time and date at job start Tue Mar 31 2020 12:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29360 * 124.67335 * 2 1 4 4 C 1.30961 * 117.49344 * 179.72961 * 3 2 1 5 5 C 1.37073 * 113.84226 * 0.52712 * 4 3 2 6 6 C 1.41725 * 126.18673 * 179.78581 * 5 4 3 7 7 C 1.35554 * 119.99872 * 179.71399 * 6 5 4 8 8 C 1.41545 * 119.99938 * 179.97438 * 7 6 5 9 9 O 1.21776 * 120.00472 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00016 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00058 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47289 * 270.00143 * 11 10 8 13 13 H 1.07994 * 119.99399 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99734 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00111 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47123 * 89.99915 * 16 14 12 18 18 H 1.48498 * 109.47161 * 209.99603 * 16 14 12 19 19 H 1.48497 * 109.47329 * 329.99749 * 16 14 12 20 20 C 1.46493 * 120.00131 * 0.02562 * 10 8 7 21 21 C 1.53000 * 109.47156 * 269.99999 * 20 10 8 22 22 C 1.52997 * 109.47190 * 59.99753 * 21 20 10 23 23 C 1.53001 * 109.47231 * 179.97438 * 21 20 10 24 24 C 1.52997 * 109.47006 * 299.99875 * 21 20 10 25 25 S 1.70917 * 124.67636 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.46466 * 269.97104 * 1 2 3 27 27 H 1.08995 * 109.47123 * 29.96953 * 1 2 3 28 28 H 1.09002 * 109.47123 * 149.97328 * 1 2 3 29 29 H 1.07997 * 123.07557 * 180.35159 * 4 3 2 30 30 H 1.08001 * 119.99682 * 359.71843 * 6 5 4 31 31 H 1.08001 * 120.00446 * 0.02562 * 7 6 5 32 32 H 1.09001 * 109.47060 * 30.00593 * 11 10 8 33 33 H 1.09004 * 109.47073 * 150.00082 * 11 10 8 34 34 H 0.97007 * 120.00011 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.47571 * 29.99644 * 20 10 8 36 36 H 1.09005 * 109.47727 * 150.00102 * 20 10 8 37 37 H 1.08996 * 109.47314 * 60.00304 * 22 21 20 38 38 H 1.08999 * 109.47577 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47216 * 300.00239 * 22 21 20 40 40 H 1.08996 * 109.47242 * 60.00308 * 23 21 20 41 41 H 1.09005 * 109.47319 * 179.97438 * 23 21 20 42 42 H 1.08997 * 109.47602 * 300.00018 * 23 21 20 43 43 H 1.09003 * 109.47432 * 59.99748 * 24 21 20 44 44 H 1.09005 * 109.47368 * 180.02562 * 24 21 20 45 45 H 1.09005 * 109.47063 * 299.99399 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0639 0.0000 4 6 3.5423 0.9002 0.0055 5 6 3.9353 -0.4130 -0.0010 6 6 5.2711 -0.8866 -0.0016 7 6 5.5176 -2.2195 -0.0026 8 6 6.8517 -2.6925 -0.0037 9 8 7.7780 -1.9021 -0.0043 10 7 7.0967 -4.0179 -0.0052 11 6 8.4775 -4.5075 -0.0069 12 6 8.9497 -4.6740 -1.4284 13 1 8.2876 -4.4383 -2.2483 14 6 10.2273 -5.1263 -1.6818 15 7 10.6391 -5.2721 -2.9223 16 14 11.3726 -5.5333 -0.2634 17 1 11.2087 -6.9609 0.1112 18 1 12.7779 -5.2881 -0.6759 19 1 11.0418 -4.6745 0.9020 20 6 5.9824 -4.9688 -0.0061 21 6 5.5946 -5.3015 1.4360 22 6 5.1717 -4.0210 2.1587 23 6 4.4304 -6.2942 1.4351 24 6 6.7935 -5.9214 2.1565 25 16 2.4794 -1.4056 -0.0006 26 1 -0.3632 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5133 28 1 -0.3633 -0.8898 -0.5143 29 1 4.2401 1.7244 0.0115 30 1 6.0926 -0.1854 -0.0012 31 1 4.6961 -2.9206 -0.0033 32 1 9.1179 -3.7906 0.5071 33 1 8.5230 -5.4682 0.5060 34 1 11.5378 -5.5907 -3.1007 35 1 5.1282 -4.5272 -0.5194 36 1 6.2837 -5.8812 -0.5210 37 1 4.3175 -3.5793 1.6455 38 1 4.8949 -4.2580 3.1860 39 1 6.0008 -3.3134 2.1594 40 1 4.7312 -7.2065 0.9202 41 1 4.1543 -6.5316 2.4625 42 1 3.5763 -5.8522 0.9219 43 1 7.6227 -5.2139 2.1572 44 1 6.5171 -6.1589 3.1838 45 1 7.0947 -6.8338 1.6417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112293498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:51 Heat of formation + Delta-G solvation = 21.026895 kcal Electronic energy + Delta-G solvation = -25379.891918 eV Core-core repulsion = 21910.754901 eV Total energy + Delta-G solvation = -3469.137017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.03216 -39.71219 -37.20922 -34.82745 -33.84668 -32.38113 -31.66899 -29.25377 -27.74040 -27.14694 -27.00854 -25.70320 -24.52687 -23.23460 -21.29801 -19.80730 -19.35400 -18.38122 -17.30223 -16.98106 -16.95023 -15.51262 -15.26248 -15.21029 -15.08389 -14.26895 -14.16163 -14.00065 -13.79031 -13.52135 -13.45656 -13.05962 -13.00524 -12.70992 -12.48118 -12.36134 -12.22768 -11.90592 -11.69663 -11.51248 -11.42310 -11.30299 -11.11911 -10.87226 -10.71800 -10.67445 -10.50513 -10.23409 -10.05678 -9.91813 -9.51614 -9.32808 -9.12261 -8.57977 -8.24326 -7.64163 -6.07781 -4.06022 -0.09418 1.06200 1.48948 1.75831 2.76629 3.26559 3.35241 3.39238 3.82889 3.92191 3.95504 4.40171 4.72749 4.81409 4.87340 4.93658 5.02532 5.08007 5.09420 5.13293 5.18125 5.24949 5.48126 5.53021 5.60109 5.62094 5.69347 5.82580 5.87174 5.95583 6.01743 6.05946 6.11225 6.17301 6.20290 6.29793 6.31826 6.46694 6.54577 6.74234 6.99772 7.35497 7.49256 7.62981 8.23735 8.47873 8.92095 8.98166 9.52612 11.05728 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.003578 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.267089 B = 7823.416236 C = 8815.938048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.030 3.970 3 N -0.474 5.474 4 C 0.063 3.937 5 C -0.201 4.201 6 C -0.016 4.016 7 C -0.185 4.185 8 C 0.540 3.460 9 O -0.544 6.544 10 N -0.581 5.581 11 C 0.213 3.787 12 C -0.527 4.527 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.898 5.898 16 Si 0.872 3.128 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.263 1.263 20 C 0.118 3.882 21 C -0.089 4.089 22 C -0.144 4.144 23 C -0.137 4.137 24 C -0.144 4.144 25 S 0.151 5.849 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.183 0.817 30 H 0.151 0.849 31 H 0.126 0.874 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.006 3.823 9.716 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.244 4.244 3 N -0.188 5.188 4 C -0.093 4.093 5 C -0.322 4.322 6 C -0.038 4.038 7 C -0.209 4.209 8 C 0.330 3.670 9 O -0.424 6.424 10 N -0.310 5.310 11 C 0.093 3.907 12 C -0.566 4.566 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.699 3.301 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.188 1.188 20 C -0.006 4.006 21 C -0.090 4.090 22 C -0.201 4.201 23 C -0.195 4.195 24 C -0.201 4.201 25 S 0.408 5.592 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.200 0.800 30 H 0.168 0.832 31 H 0.144 0.856 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.901 3.583 9.593 23.275 hybrid contribution 1.360 0.351 0.505 1.492 sum -19.541 3.933 10.098 22.345 Atomic orbital electron populations 1.20453 0.85205 1.04271 1.03864 1.27203 1.01938 0.91266 1.03975 1.65989 1.05302 1.31487 1.16021 1.22583 0.90876 0.95261 1.00543 1.23979 0.97855 0.96552 1.13782 1.20527 0.92466 0.96419 0.94396 1.22597 0.98196 0.95985 1.04091 1.16750 0.88812 0.82977 0.78435 1.90812 1.46347 1.54780 1.50492 1.47781 1.08211 1.04600 1.70396 1.19778 0.77975 0.94653 0.98339 1.21344 0.99467 1.44447 0.91310 0.90786 1.24841 0.97598 0.95035 0.95480 1.69897 1.18562 1.46587 1.18593 0.86902 0.80802 0.79025 0.83397 1.20079 1.20964 1.18790 1.21616 0.89537 0.94581 0.94884 1.21020 0.95936 0.95684 0.96378 1.22061 1.01054 0.97247 0.99741 1.21802 0.97218 0.98835 1.01652 1.21973 0.97850 1.01110 0.99155 1.83920 0.97248 1.11508 1.66500 0.89573 0.89251 0.90045 0.80005 0.83196 0.85621 0.94210 0.95016 0.92599 0.91378 0.89494 0.92847 0.92869 0.92227 0.92321 0.92659 0.92747 0.91659 0.93305 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.10 16 2 C 0.03 0.30 7.37 -13.32 -0.10 0.20 16 3 N -0.47 -5.65 10.50 -11.18 -0.12 -5.77 16 4 C 0.06 0.73 11.38 -18.35 -0.21 0.52 16 5 C -0.20 -2.45 6.26 -38.67 -0.24 -2.69 16 6 C -0.02 -0.22 9.39 -39.21 -0.37 -0.59 16 7 C -0.19 -2.88 6.44 -39.28 -0.25 -3.14 16 8 C 0.54 11.01 6.08 -15.00 -0.09 10.92 16 9 O -0.54 -13.33 15.69 5.12 0.08 -13.25 16 10 N -0.58 -11.73 1.98 -178.49 -0.35 -12.08 16 11 C 0.21 5.12 3.13 -5.19 -0.02 5.10 16 12 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 13 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 14 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 16 Si 0.87 21.47 27.47 -169.99 -4.67 16.81 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 20 C 0.12 1.85 4.51 -4.05 -0.02 1.83 16 21 C -0.09 -1.14 0.84 -154.51 -0.13 -1.27 16 22 C -0.14 -1.78 6.88 37.16 0.26 -1.52 16 23 C -0.14 -1.39 8.47 37.16 0.31 -1.07 16 24 C -0.14 -2.01 7.23 37.16 0.27 -1.74 16 25 S 0.15 1.51 21.92 -107.50 -2.36 -0.85 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.18 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.15 2.20 7.46 -52.49 -0.39 1.80 16 31 H 0.13 1.67 3.51 -52.49 -0.18 1.49 16 32 H 0.04 1.04 6.48 -51.93 -0.34 0.71 16 33 H 0.03 0.71 5.48 -51.93 -0.28 0.43 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.07 0.94 6.08 -51.93 -0.32 0.62 16 36 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 37 H 0.05 0.59 6.28 -51.93 -0.33 0.27 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.88 6.00 -51.93 -0.31 0.57 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 1.07 5.99 -51.93 -0.31 0.76 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 369.13 15.07 5.56 5.56 Total: -1.00 -34.46 369.13 -8.43 -42.88 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.69 Total: 0.60 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.65 Total: -6.95 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.30 Total: -44.80 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.36 Total: -0.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.46 -8.43 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112293498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.908 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds