Wall clock time and date at job start Tue Mar 31 2020 12:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29360 * 124.67335 * 2 1 4 4 C 1.30961 * 117.49344 * 179.72961 * 3 2 1 5 5 C 1.37073 * 113.84226 * 0.52712 * 4 3 2 6 6 C 1.41725 * 126.18673 * 179.78581 * 5 4 3 7 7 C 1.35554 * 119.99872 * 179.71399 * 6 5 4 8 8 C 1.41545 * 119.99938 * 179.97438 * 7 6 5 9 9 O 1.21776 * 120.00472 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00016 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00058 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47289 * 270.00143 * 11 10 8 13 13 H 1.07994 * 119.99399 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99734 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00111 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47123 * 89.99915 * 16 14 12 18 18 H 1.48498 * 109.47161 * 209.99603 * 16 14 12 19 19 H 1.48497 * 109.47329 * 329.99749 * 16 14 12 20 20 C 1.46493 * 120.00131 * 0.02562 * 10 8 7 21 21 C 1.53000 * 109.47156 * 269.99999 * 20 10 8 22 22 C 1.52997 * 109.47190 * 59.99753 * 21 20 10 23 23 C 1.53001 * 109.47231 * 179.97438 * 21 20 10 24 24 C 1.52997 * 109.47006 * 299.99875 * 21 20 10 25 25 S 1.70917 * 124.67636 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.46466 * 269.97104 * 1 2 3 27 27 H 1.08995 * 109.47123 * 29.96953 * 1 2 3 28 28 H 1.09002 * 109.47123 * 149.97328 * 1 2 3 29 29 H 1.07997 * 123.07557 * 180.35159 * 4 3 2 30 30 H 1.08001 * 119.99682 * 359.71843 * 6 5 4 31 31 H 1.08001 * 120.00446 * 0.02562 * 7 6 5 32 32 H 1.09001 * 109.47060 * 30.00593 * 11 10 8 33 33 H 1.09004 * 109.47073 * 150.00082 * 11 10 8 34 34 H 0.97007 * 120.00011 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.47571 * 29.99644 * 20 10 8 36 36 H 1.09005 * 109.47727 * 150.00102 * 20 10 8 37 37 H 1.08996 * 109.47314 * 60.00304 * 22 21 20 38 38 H 1.08999 * 109.47577 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47216 * 300.00239 * 22 21 20 40 40 H 1.08996 * 109.47242 * 60.00308 * 23 21 20 41 41 H 1.09005 * 109.47319 * 179.97438 * 23 21 20 42 42 H 1.08997 * 109.47602 * 300.00018 * 23 21 20 43 43 H 1.09003 * 109.47432 * 59.99748 * 24 21 20 44 44 H 1.09005 * 109.47368 * 180.02562 * 24 21 20 45 45 H 1.09005 * 109.47063 * 299.99399 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0639 0.0000 4 6 3.5423 0.9002 0.0055 5 6 3.9353 -0.4130 -0.0010 6 6 5.2711 -0.8866 -0.0016 7 6 5.5176 -2.2195 -0.0026 8 6 6.8517 -2.6925 -0.0037 9 8 7.7780 -1.9021 -0.0043 10 7 7.0967 -4.0179 -0.0052 11 6 8.4775 -4.5075 -0.0069 12 6 8.9497 -4.6740 -1.4284 13 1 8.2876 -4.4383 -2.2483 14 6 10.2273 -5.1263 -1.6818 15 7 10.6391 -5.2721 -2.9223 16 14 11.3726 -5.5333 -0.2634 17 1 11.2087 -6.9609 0.1112 18 1 12.7779 -5.2881 -0.6759 19 1 11.0418 -4.6745 0.9020 20 6 5.9824 -4.9688 -0.0061 21 6 5.5946 -5.3015 1.4360 22 6 5.1717 -4.0210 2.1587 23 6 4.4304 -6.2942 1.4351 24 6 6.7935 -5.9214 2.1565 25 16 2.4794 -1.4056 -0.0006 26 1 -0.3632 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5133 28 1 -0.3633 -0.8898 -0.5143 29 1 4.2401 1.7244 0.0115 30 1 6.0926 -0.1854 -0.0012 31 1 4.6961 -2.9206 -0.0033 32 1 9.1179 -3.7906 0.5071 33 1 8.5230 -5.4682 0.5060 34 1 11.5378 -5.5907 -3.1007 35 1 5.1282 -4.5272 -0.5194 36 1 6.2837 -5.8812 -0.5210 37 1 4.3175 -3.5793 1.6455 38 1 4.8949 -4.2580 3.1860 39 1 6.0008 -3.3134 2.1594 40 1 4.7312 -7.2065 0.9202 41 1 4.1543 -6.5316 2.4625 42 1 3.5763 -5.8522 0.9219 43 1 7.6227 -5.2139 2.1572 44 1 6.5171 -6.1589 3.1838 45 1 7.0947 -6.8338 1.6417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112293498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:50 Heat of formation + Delta-G solvation = -0.725173 kcal Electronic energy + Delta-G solvation = -25380.835159 eV Core-core repulsion = 21910.754901 eV Total energy + Delta-G solvation = -3470.080257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41772 -40.67046 -38.50800 -36.11627 -35.37353 -34.37886 -32.53378 -30.79136 -29.03592 -28.10431 -28.03889 -27.02567 -25.60461 -24.62744 -22.80775 -20.78545 -20.54756 -19.48244 -19.15247 -18.40076 -18.25533 -17.10424 -16.66639 -16.25659 -16.00154 -15.86307 -15.25322 -15.10575 -15.00148 -14.81578 -14.66466 -14.35201 -14.16444 -13.72336 -13.62892 -13.59082 -13.32714 -13.07133 -13.02071 -12.74471 -12.60569 -12.48749 -12.41292 -12.29873 -12.19687 -11.84059 -11.77422 -11.69961 -11.56805 -11.42824 -10.91587 -10.81705 -10.61670 -10.14373 -9.48744 -9.09872 -8.34692 -6.38998 -1.06252 0.23440 0.64479 0.67055 1.29171 1.34028 1.44808 1.81052 2.29739 2.33872 2.51140 2.99437 3.18723 3.67801 3.77924 3.87819 3.97610 4.02708 4.11882 4.16726 4.33885 4.46990 4.58024 4.63629 4.69198 4.70052 4.77647 4.84153 4.89189 4.94162 4.95187 4.99636 5.06665 5.10068 5.13846 5.17234 5.21880 5.24841 5.36290 5.45395 5.45642 5.56313 5.68624 6.24431 6.61906 6.64065 6.69175 7.20678 7.39522 8.82495 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.003578 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.267089 B = 7823.416236 C = 8815.938048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.044 3.956 3 N -0.504 5.504 4 C 0.079 3.921 5 C -0.244 4.244 6 C 0.019 3.981 7 C -0.213 4.213 8 C 0.536 3.464 9 O -0.604 6.604 10 N -0.587 5.587 11 C 0.228 3.772 12 C -0.535 4.535 13 H 0.027 0.973 14 C 0.013 3.987 15 N -0.945 5.945 16 Si 0.943 3.057 17 H -0.249 1.249 18 H -0.281 1.281 19 H -0.257 1.257 20 C 0.111 3.889 21 C -0.083 4.083 22 C -0.139 4.139 23 C -0.131 4.131 24 C -0.145 4.145 25 S 0.190 5.810 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.195 0.805 30 H 0.136 0.864 31 H 0.150 0.850 32 H 0.015 0.985 33 H 0.053 0.947 34 H 0.268 0.732 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.029 0.971 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.034 0.966 44 H 0.072 0.928 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.332 3.174 11.810 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.229 4.229 3 N -0.219 5.219 4 C -0.078 4.078 5 C -0.365 4.365 6 C -0.003 4.003 7 C -0.236 4.236 8 C 0.330 3.670 9 O -0.489 6.489 10 N -0.315 5.315 11 C 0.106 3.894 12 C -0.574 4.574 13 H 0.046 0.954 14 C -0.185 4.185 15 N -0.585 5.585 16 Si 0.765 3.235 17 H -0.173 1.173 18 H -0.206 1.206 19 H -0.181 1.181 20 C -0.011 4.011 21 C -0.084 4.084 22 C -0.196 4.196 23 C -0.189 4.189 24 C -0.203 4.203 25 S 0.448 5.552 26 H 0.124 0.876 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.212 0.788 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.285 2.882 11.694 27.107 hybrid contribution 2.156 0.727 -0.229 2.287 sum -22.129 3.610 11.465 25.182 Atomic orbital electron populations 1.20725 0.82356 1.05674 1.05488 1.28032 1.03638 0.90901 1.00374 1.66126 1.05321 1.32427 1.18038 1.22916 0.91372 0.95550 0.97917 1.23844 0.97813 0.97599 1.17281 1.20498 0.93415 0.95678 0.90703 1.22234 0.95929 0.96819 1.08626 1.17439 0.90212 0.82486 0.76891 1.90762 1.48414 1.56062 1.53614 1.47799 1.07811 1.05591 1.70296 1.19373 0.80113 0.94837 0.95105 1.21588 0.99242 1.44128 0.92442 0.95430 1.25809 0.99423 0.94776 0.98495 1.70051 1.19355 1.47965 1.21142 0.85781 0.77950 0.80156 0.79575 1.17282 1.20649 1.18138 1.21924 0.88573 0.93134 0.97496 1.20987 0.96716 0.96828 0.93853 1.22016 1.00411 0.96175 1.01012 1.21767 0.96197 0.97857 1.03088 1.21978 0.97398 1.00088 1.00797 1.83732 0.95386 1.10588 1.65495 0.87618 0.88725 0.87775 0.78788 0.84626 0.83232 0.96720 0.92926 0.92279 0.89336 0.90750 0.91377 0.90957 0.95213 0.92340 0.90915 0.91047 0.94734 0.90953 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.46 71.24 0.74 0.07 16 2 C 0.04 0.73 7.37 88.47 0.65 1.38 16 3 N -0.50 -10.85 10.50 -189.28 -1.99 -12.83 16 4 C 0.08 1.73 11.38 84.55 0.96 2.69 16 5 C -0.24 -5.65 6.26 22.86 0.14 -5.51 16 6 C 0.02 0.56 9.39 22.51 0.21 0.77 16 7 C -0.21 -6.73 6.44 22.46 0.14 -6.59 16 8 C 0.54 23.00 6.08 85.06 0.52 23.52 16 9 O -0.60 -31.68 15.69 -4.59 -0.07 -31.75 16 10 N -0.59 -24.70 1.98 -836.80 -1.66 -26.35 16 11 C 0.23 11.42 3.13 85.63 0.27 11.69 16 12 C -0.54 -32.28 9.94 25.60 0.25 -32.03 16 13 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 14 C 0.01 0.78 5.47 84.65 0.46 1.24 16 15 N -0.94 -60.64 13.96 21.45 0.30 -60.34 16 16 Si 0.94 45.26 27.47 68.60 1.88 47.14 16 17 H -0.25 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 20 C 0.11 3.48 4.51 86.38 0.39 3.87 16 21 C -0.08 -1.99 0.84 -52.18 -0.04 -2.03 16 22 C -0.14 -3.17 6.88 71.98 0.50 -2.67 16 23 C -0.13 -2.20 8.47 71.98 0.61 -1.59 16 24 C -0.15 -3.89 7.23 71.98 0.52 -3.37 16 25 S 0.19 3.24 21.92 -56.49 -1.24 2.01 16 26 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.20 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.14 4.20 7.46 -2.91 -0.02 4.18 16 31 H 0.15 3.80 3.51 -2.91 -0.01 3.79 16 32 H 0.01 0.81 6.48 -2.39 -0.02 0.80 16 33 H 0.05 2.40 5.48 -2.38 -0.01 2.39 16 34 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 35 H 0.09 2.36 6.08 -2.38 -0.01 2.35 16 36 H 0.07 2.49 8.07 -2.38 -0.02 2.47 16 37 H 0.07 1.32 6.28 -2.39 -0.02 1.31 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.03 0.86 6.00 -2.39 -0.01 0.85 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 43 H 0.03 1.12 5.99 -2.39 -0.01 1.11 16 44 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.05 1.47 8.08 -2.38 -0.02 1.45 16 Total: -1.00 -80.60 369.13 4.50 -76.10 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.93 Total: 14.59 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 6.33 Total: -8.57 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -3.34 Total: -99.52 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.07 Total: -31.75 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.24 Total: 2.01 kcal Total: -80.60 4.50 -76.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112293498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.376 kcal (2) G-P(sol) polarization free energy of solvation -80.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds