Wall clock time and date at job start Tue Mar 31 2020 14:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47552 * 2 1 4 4 C 1.53004 * 109.47308 * 120.00370 * 2 1 3 5 5 H 1.08995 * 109.46996 * 59.99646 * 4 2 1 6 6 N 1.46498 * 109.46960 * 299.99812 * 4 2 1 7 7 C 1.34775 * 119.99939 * 84.99512 * 6 4 2 8 8 O 1.21569 * 120.00005 * 0.02562 * 7 6 4 9 9 C 1.47694 * 120.00021 * 179.97438 * 7 6 4 10 10 C 1.39661 * 120.16593 * 0.02562 * 9 7 6 11 11 C 1.37847 * 119.88072 * 179.97438 * 10 9 7 12 12 C 1.38469 * 120.22006 * 0.02816 * 11 10 9 13 13 C 1.38200 * 120.33158 * 359.97204 * 12 11 10 14 14 C 1.38320 * 120.12393 * 359.74919 * 13 12 11 15 15 F 1.35099 * 120.11407 * 180.27461 * 14 13 12 16 16 C 1.50697 * 109.47104 * 179.97438 * 4 2 1 17 17 O 1.21296 * 119.99952 * 120.00230 * 16 4 2 18 18 N 1.34778 * 119.99986 * 300.27419 * 16 4 2 19 19 C 1.46495 * 120.00103 * 359.72356 * 18 16 4 20 20 C 1.37101 * 120.00019 * 179.72639 * 18 16 4 21 21 H 1.08000 * 120.00065 * 22.57711 * 20 18 16 22 22 C 1.38944 * 119.99882 * 202.57424 * 20 18 16 23 23 N 1.31408 * 120.00145 * 10.35285 * 22 20 18 24 24 Si 1.86804 * 119.99961 * 190.34764 * 22 20 18 25 25 H 1.48504 * 109.46991 * 60.00136 * 24 22 20 26 26 H 1.48497 * 109.47369 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47279 * 300.00493 * 24 22 20 28 28 H 1.08995 * 109.47381 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46984 * 299.99788 * 1 2 3 30 30 H 1.09004 * 109.46931 * 59.99628 * 1 2 3 31 31 H 1.09004 * 109.46984 * 240.00212 * 2 1 3 32 32 H 1.08993 * 109.47484 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47056 * 300.00303 * 3 2 1 34 34 H 1.09004 * 109.46803 * 60.00101 * 3 2 1 35 35 H 0.97002 * 119.99844 * 265.00303 * 6 4 2 36 36 H 1.08003 * 120.05981 * 0.02562 * 10 9 7 37 37 H 1.08003 * 119.89490 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.82945 * 179.97438 * 12 11 10 39 39 H 1.08007 * 119.93672 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.47215 * 93.54214 * 19 18 16 41 41 H 1.08997 * 109.47539 * 213.54717 * 19 18 16 42 42 H 1.09004 * 109.47327 * 333.54969 * 19 18 16 43 43 H 0.97003 * 120.00108 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 7 1.5517 -0.0308 2.4454 7 6 0.3297 -0.3165 2.9368 8 8 -0.3671 -1.1477 2.3878 9 6 -0.1623 0.3792 4.1431 10 6 0.6355 1.3343 4.7770 11 6 0.1702 1.9805 5.9022 12 6 -1.0852 1.6855 6.4063 13 6 -1.8822 0.7420 5.7862 14 6 -1.4316 0.0892 4.6530 15 9 -2.2131 -0.8290 4.0437 16 6 3.5470 -0.7219 1.2488 17 8 4.1539 -0.1968 2.1584 18 7 4.2204 -1.3009 0.2351 19 6 3.4875 -1.9352 -0.8634 20 6 5.5914 -1.2965 0.2320 21 1 6.1332 -1.1761 1.1585 22 6 6.2839 -1.4470 -0.9632 23 7 5.6400 -1.3895 -2.1073 24 14 8.1301 -1.7309 -0.9436 25 1 8.4313 -2.9777 -0.1951 26 1 8.6263 -1.8578 -2.3375 27 1 8.8006 -0.5826 -0.2827 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 2.1079 0.6322 2.8836 36 1 1.6150 1.5667 4.3858 37 1 0.7869 2.7194 6.3923 38 1 -1.4434 2.1953 7.2884 39 1 -2.8606 0.5171 6.1846 40 1 3.3566 -1.2187 -1.6743 41 1 4.0495 -2.7958 -1.2261 42 1 2.5109 -2.2629 -0.5071 43 1 6.1234 -1.4950 -2.9417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120851842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:50 Heat of formation + Delta-G solvation = -75.275053 kcal Electronic energy + Delta-G solvation = -28150.937337 eV Core-core repulsion = 24111.411179 eV Total energy + Delta-G solvation = -4039.526159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.87636 -40.38909 -39.05692 -38.00105 -35.48861 -34.86299 -33.07058 -31.59961 -31.21962 -30.66747 -27.52796 -26.71045 -26.15925 -24.45164 -23.78475 -22.70540 -20.80701 -19.90807 -19.16645 -18.16370 -17.24069 -16.96253 -16.47344 -15.94247 -15.79819 -15.46258 -15.21555 -15.04743 -14.58787 -14.34008 -14.27168 -13.91004 -13.68288 -13.32877 -13.22238 -12.77043 -12.65222 -12.42613 -12.23873 -11.79522 -11.77160 -11.61977 -11.51216 -11.41975 -11.24510 -10.97399 -10.86323 -10.54924 -10.45717 -10.32943 -10.11407 -9.68499 -9.37051 -9.05982 -8.96075 -8.78810 -8.37443 -7.77330 -6.36998 -3.95353 0.56085 0.94536 2.83552 3.14495 3.20484 3.21956 3.29528 3.62197 3.76912 4.03896 4.09647 4.44609 4.58854 4.72204 4.78004 4.99408 5.03456 5.04996 5.28977 5.42176 5.44720 5.48484 5.75270 5.78542 5.81325 5.91877 5.96278 6.06616 6.08513 6.14127 6.25531 6.28984 6.42462 6.45893 6.56316 6.66231 6.78343 6.80463 6.83974 7.19894 7.50140 7.77153 8.02957 8.37460 8.43675 9.08751 9.32901 9.85265 10.65567 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.003387 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.654383 B = 8265.970315 C = 8867.240217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C -0.141 4.141 4 C 0.141 3.859 5 H 0.098 0.902 6 N -0.692 5.692 7 C 0.555 3.445 8 O -0.527 6.527 9 C -0.166 4.166 10 C -0.056 4.056 11 C -0.140 4.140 12 C -0.069 4.069 13 C -0.169 4.169 14 C 0.157 3.843 15 F -0.115 7.115 16 C 0.443 3.557 17 O -0.591 6.591 18 N -0.434 5.434 19 C 0.106 3.894 20 C -0.309 4.309 21 H 0.099 0.901 22 C 0.033 3.967 23 N -0.880 5.880 24 Si 0.928 3.072 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.406 0.594 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 6.098 10.143 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.033 3.967 5 H 0.116 0.884 6 N -0.344 5.344 7 C 0.341 3.659 8 O -0.405 6.405 9 C -0.171 4.171 10 C -0.075 4.075 11 C -0.158 4.158 12 C -0.087 4.087 13 C -0.188 4.188 14 C 0.136 3.864 15 F -0.093 7.093 16 C 0.230 3.770 17 O -0.477 6.477 18 N -0.151 5.151 19 C -0.038 4.038 20 C -0.436 4.436 21 H 0.117 0.883 22 C -0.170 4.170 23 N -0.519 5.519 24 Si 0.755 3.245 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.244 0.756 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.617 5.671 9.897 17.009 hybrid contribution 1.037 -0.016 -0.115 1.043 sum -11.580 5.654 9.782 16.179 Atomic orbital electron populations 1.21856 0.94538 1.02223 1.00537 1.21744 0.96194 0.97353 0.97923 1.21750 1.01994 0.95405 1.00699 1.20793 0.93758 0.97467 0.84724 0.88387 1.45563 1.16652 1.43042 1.29185 1.17861 0.81945 0.82731 0.83374 1.90823 1.56226 1.33483 1.59998 1.20178 0.95226 1.02225 0.99423 1.21384 0.99069 0.92765 0.94259 1.21179 0.96557 1.01178 0.96858 1.21194 0.93514 0.95258 0.98780 1.21150 1.02164 0.99433 0.96015 1.17724 0.88157 0.88565 0.91915 1.91596 1.72853 1.62948 1.81917 1.19812 0.87684 0.83636 0.85885 1.90489 1.69328 1.49946 1.37935 1.43451 1.06246 1.46531 1.18890 1.21744 0.92949 0.99005 0.90079 1.19614 0.80131 1.49060 0.94837 0.88319 1.25345 1.00448 0.96582 0.94643 1.69976 1.36629 1.47773 0.97498 0.85965 0.82162 0.79191 0.77183 1.19886 1.20905 1.19779 0.91991 0.93261 0.93628 0.88352 0.91764 0.93045 0.93422 0.75604 0.84250 0.84648 0.84660 0.84208 0.91498 0.91257 0.95092 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 7.72 37.16 0.29 -1.88 16 2 C -0.11 -1.97 2.41 -90.62 -0.22 -2.18 16 3 C -0.14 -2.41 8.79 37.16 0.33 -2.08 16 4 C 0.14 2.71 1.61 -69.08 -0.11 2.60 16 5 H 0.10 1.95 6.85 -51.93 -0.36 1.59 16 6 N -0.69 -11.91 4.03 -55.93 -0.23 -12.13 16 7 C 0.55 9.37 6.12 -12.40 -0.08 9.30 16 8 O -0.53 -10.22 12.46 5.30 0.07 -10.16 16 9 C -0.17 -2.31 5.88 -104.91 -0.62 -2.93 16 10 C -0.06 -0.62 9.54 -39.19 -0.37 -0.99 16 11 C -0.14 -1.18 10.03 -39.64 -0.40 -1.58 16 12 C -0.07 -0.54 10.04 -39.51 -0.40 -0.93 16 13 C -0.17 -1.61 10.01 -39.57 -0.40 -2.01 16 14 C 0.16 2.07 7.29 -38.96 -0.28 1.79 16 15 F -0.12 -1.78 15.55 2.25 0.04 -1.74 16 16 C 0.44 10.32 5.84 -10.99 -0.06 10.25 16 17 O -0.59 -15.20 15.53 5.54 0.09 -15.11 16 18 N -0.43 -10.71 3.02 -122.20 -0.37 -11.07 16 19 C 0.11 2.31 7.03 59.84 0.42 2.73 16 20 C -0.31 -8.32 9.29 -14.93 -0.14 -8.46 16 21 H 0.10 2.78 7.40 -52.49 -0.39 2.39 16 22 C 0.03 0.86 5.15 -17.47 -0.09 0.77 16 23 N -0.88 -22.61 10.55 55.50 0.59 -22.03 16 24 Si 0.93 20.27 29.57 -169.99 -5.03 15.24 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 28 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 29 H 0.05 0.82 5.78 -51.93 -0.30 0.52 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.78 4.57 -51.93 -0.24 1.54 16 32 H 0.06 1.29 7.22 -51.93 -0.37 0.91 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.75 7.60 -51.93 -0.39 0.36 16 35 H 0.41 6.67 5.82 -40.82 -0.24 6.43 16 36 H 0.14 1.44 6.41 -52.48 -0.34 1.10 16 37 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.07 1.50 6.49 -51.93 -0.34 1.16 16 41 H 0.07 1.60 7.13 -51.93 -0.37 1.23 16 42 H 0.03 0.58 5.75 -51.93 -0.30 0.29 16 43 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -30.94 346.08 -7.03 -37.97 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.27 Total: 9.43 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.13 Total: 4.39 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.01 Total: -45.23 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: 0.15 Total: -25.27 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.94 -7.03 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120851842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.304 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds