Wall clock time and date at job start Tue Mar 31 2020 14:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47552 * 2 1 4 4 C 1.53004 * 109.47308 * 120.00370 * 2 1 3 5 5 H 1.08995 * 109.46996 * 59.99646 * 4 2 1 6 6 N 1.46498 * 109.46960 * 299.99812 * 4 2 1 7 7 C 1.34775 * 119.99939 * 84.99512 * 6 4 2 8 8 O 1.21569 * 120.00005 * 0.02562 * 7 6 4 9 9 C 1.47694 * 120.00021 * 179.97438 * 7 6 4 10 10 C 1.39661 * 120.16593 * 0.02562 * 9 7 6 11 11 C 1.37847 * 119.88072 * 179.97438 * 10 9 7 12 12 C 1.38469 * 120.22006 * 0.02816 * 11 10 9 13 13 C 1.38200 * 120.33158 * 359.97204 * 12 11 10 14 14 C 1.38320 * 120.12393 * 359.74919 * 13 12 11 15 15 F 1.35099 * 120.11407 * 180.27461 * 14 13 12 16 16 C 1.50697 * 109.47104 * 179.97438 * 4 2 1 17 17 O 1.21296 * 119.99952 * 120.00230 * 16 4 2 18 18 N 1.34778 * 119.99986 * 300.27419 * 16 4 2 19 19 C 1.46495 * 120.00103 * 359.72356 * 18 16 4 20 20 C 1.37101 * 120.00019 * 179.72639 * 18 16 4 21 21 H 1.08000 * 120.00065 * 22.57711 * 20 18 16 22 22 C 1.38944 * 119.99882 * 202.57424 * 20 18 16 23 23 N 1.31408 * 120.00145 * 10.35285 * 22 20 18 24 24 Si 1.86804 * 119.99961 * 190.34764 * 22 20 18 25 25 H 1.48504 * 109.46991 * 60.00136 * 24 22 20 26 26 H 1.48497 * 109.47369 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47279 * 300.00493 * 24 22 20 28 28 H 1.08995 * 109.47381 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46984 * 299.99788 * 1 2 3 30 30 H 1.09004 * 109.46931 * 59.99628 * 1 2 3 31 31 H 1.09004 * 109.46984 * 240.00212 * 2 1 3 32 32 H 1.08993 * 109.47484 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47056 * 300.00303 * 3 2 1 34 34 H 1.09004 * 109.46803 * 60.00101 * 3 2 1 35 35 H 0.97002 * 119.99844 * 265.00303 * 6 4 2 36 36 H 1.08003 * 120.05981 * 0.02562 * 10 9 7 37 37 H 1.08003 * 119.89490 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.82945 * 179.97438 * 12 11 10 39 39 H 1.08007 * 119.93672 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.47215 * 93.54214 * 19 18 16 41 41 H 1.08997 * 109.47539 * 213.54717 * 19 18 16 42 42 H 1.09004 * 109.47327 * 333.54969 * 19 18 16 43 43 H 0.97003 * 120.00108 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 7 1.5517 -0.0308 2.4454 7 6 0.3297 -0.3165 2.9368 8 8 -0.3671 -1.1477 2.3878 9 6 -0.1623 0.3792 4.1431 10 6 0.6355 1.3343 4.7770 11 6 0.1702 1.9805 5.9022 12 6 -1.0852 1.6855 6.4063 13 6 -1.8822 0.7420 5.7862 14 6 -1.4316 0.0892 4.6530 15 9 -2.2131 -0.8290 4.0437 16 6 3.5470 -0.7219 1.2488 17 8 4.1539 -0.1968 2.1584 18 7 4.2204 -1.3009 0.2351 19 6 3.4875 -1.9352 -0.8634 20 6 5.5914 -1.2965 0.2320 21 1 6.1332 -1.1761 1.1585 22 6 6.2839 -1.4470 -0.9632 23 7 5.6400 -1.3895 -2.1073 24 14 8.1301 -1.7309 -0.9436 25 1 8.4313 -2.9777 -0.1951 26 1 8.6263 -1.8578 -2.3375 27 1 8.8006 -0.5826 -0.2827 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 2.1079 0.6322 2.8836 36 1 1.6150 1.5667 4.3858 37 1 0.7869 2.7194 6.3923 38 1 -1.4434 2.1953 7.2884 39 1 -2.8606 0.5171 6.1846 40 1 3.3566 -1.2187 -1.6743 41 1 4.0495 -2.7958 -1.2261 42 1 2.5109 -2.2629 -0.5071 43 1 6.1234 -1.4950 -2.9417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120851842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:49 Heat of formation + Delta-G solvation = -94.031094 kcal Electronic energy + Delta-G solvation = -28151.750660 eV Core-core repulsion = 24111.411179 eV Total energy + Delta-G solvation = -4040.339482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.90420 -41.81036 -40.40329 -39.22140 -37.04909 -36.76825 -34.44000 -33.51586 -32.20437 -31.47062 -29.18811 -28.14225 -27.88437 -26.16370 -24.91451 -23.57314 -22.08152 -21.49921 -20.65104 -19.39328 -18.93661 -18.25750 -17.59666 -17.43286 -17.22668 -16.66272 -16.50924 -16.44544 -16.02970 -15.88357 -15.57079 -15.41798 -15.04610 -14.56871 -14.46503 -14.21168 -14.11262 -13.61787 -13.41202 -13.27252 -13.19508 -13.08043 -13.01683 -12.86335 -12.71658 -12.40597 -12.33964 -12.27957 -12.14793 -12.00185 -11.62528 -11.02206 -10.96568 -10.50196 -10.22265 -10.01048 -9.76703 -9.73566 -8.33646 -6.00700 -0.32696 0.16386 1.38281 1.41927 1.51625 1.75631 1.87647 1.97254 2.29375 2.68349 2.99959 3.08067 3.18189 3.52269 3.69705 3.79183 3.82496 3.95636 3.99556 4.20110 4.27919 4.29538 4.42770 4.56083 4.67316 4.73337 4.76243 4.90709 4.96098 4.99725 5.00920 5.02457 5.07695 5.21960 5.24341 5.29876 5.35492 5.39487 5.43402 5.44498 5.81507 6.04975 6.39780 6.45663 7.08146 7.11479 7.39702 7.92088 8.67168 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.003387 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.654383 B = 8265.970315 C = 8867.240217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 C -0.133 4.133 4 C 0.152 3.848 5 H 0.090 0.910 6 N -0.691 5.691 7 C 0.554 3.446 8 O -0.559 6.559 9 C -0.194 4.194 10 C -0.063 4.063 11 C -0.130 4.130 12 C -0.050 4.050 13 C -0.162 4.162 14 C 0.127 3.873 15 F -0.138 7.138 16 C 0.440 3.560 17 O -0.621 6.621 18 N -0.447 5.447 19 C 0.118 3.882 20 C -0.346 4.346 21 H 0.076 0.924 22 C 0.002 3.998 23 N -0.892 5.892 24 Si 0.990 3.010 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.275 1.275 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.409 0.591 36 H 0.140 0.860 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.165 0.835 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 7.652 11.515 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.127 4.127 3 C -0.190 4.190 4 C 0.043 3.957 5 H 0.108 0.892 6 N -0.344 5.344 7 C 0.342 3.658 8 O -0.439 6.439 9 C -0.198 4.198 10 C -0.082 4.082 11 C -0.147 4.147 12 C -0.068 4.068 13 C -0.181 4.181 14 C 0.107 3.893 15 F -0.116 7.116 16 C 0.229 3.771 17 O -0.508 6.508 18 N -0.165 5.165 19 C -0.025 4.025 20 C -0.473 4.473 21 H 0.094 0.906 22 C -0.200 4.200 23 N -0.530 5.530 24 Si 0.813 3.187 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.157 0.843 37 H 0.187 0.813 38 H 0.197 0.803 39 H 0.182 0.818 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.480 7.229 11.264 18.997 hybrid contribution 1.266 -0.427 -0.434 1.405 sum -12.214 6.802 10.830 17.684 Atomic orbital electron populations 1.21720 0.93013 1.01870 1.01254 1.21700 0.97201 0.97288 0.96524 1.21669 0.99607 0.95465 1.02305 1.20579 0.90623 0.97769 0.86713 0.89188 1.45520 1.17079 1.43030 1.28752 1.18375 0.81164 0.82263 0.83949 1.90790 1.56912 1.34992 1.61233 1.20041 0.96478 1.04098 0.99192 1.21510 0.98894 0.92558 0.95258 1.21613 0.97165 1.00600 0.95368 1.21738 0.92438 0.93557 0.99060 1.21507 1.03398 0.98776 0.94386 1.18160 0.88132 0.89486 0.93551 1.91531 1.73372 1.64055 1.82655 1.20461 0.89356 0.82442 0.84869 1.90448 1.70557 1.50959 1.38870 1.43637 1.05990 1.47068 1.19798 1.21651 0.93555 0.97963 0.89306 1.19601 0.81468 1.51589 0.94675 0.90619 1.26063 1.04392 0.95584 0.93969 1.70045 1.38058 1.47052 0.97818 0.85051 0.77080 0.78884 0.77662 1.19479 1.19529 1.20002 0.92927 0.93879 0.91413 0.88933 0.95178 0.90967 0.92308 0.75207 0.84255 0.81342 0.80258 0.81779 0.92087 0.92751 0.92472 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.85 7.72 71.98 0.56 -3.30 16 2 C -0.11 -3.77 2.41 -10.79 -0.03 -3.80 16 3 C -0.13 -4.53 8.79 71.98 0.63 -3.90 16 4 C 0.15 6.01 1.61 44.25 0.07 6.08 16 5 H 0.09 3.71 6.85 -2.39 -0.02 3.69 16 6 N -0.69 -24.44 4.03 -449.13 -1.81 -26.25 16 7 C 0.55 19.23 6.12 86.74 0.53 19.76 16 8 O -0.56 -22.43 12.46 -3.93 -0.05 -22.48 16 9 C -0.19 -5.38 5.88 -20.05 -0.12 -5.50 16 10 C -0.06 -1.32 9.54 22.52 0.21 -1.10 16 11 C -0.13 -1.72 10.03 22.23 0.22 -1.50 16 12 C -0.05 -0.55 10.04 22.32 0.22 -0.32 16 13 C -0.16 -2.64 10.01 22.28 0.22 -2.42 16 14 C 0.13 3.29 7.29 22.67 0.17 3.46 16 15 F -0.14 -4.36 15.55 44.97 0.70 -3.66 16 16 C 0.44 21.28 5.84 87.66 0.51 21.80 16 17 O -0.62 -33.19 15.53 -3.08 -0.05 -33.24 16 18 N -0.45 -22.85 3.02 -658.90 -1.99 -24.84 16 19 C 0.12 5.29 7.03 127.77 0.90 6.19 16 20 C -0.35 -19.26 9.29 84.04 0.78 -18.48 16 21 H 0.08 4.47 7.40 -2.91 -0.02 4.45 16 22 C 0.00 0.13 5.15 84.93 0.44 0.57 16 23 N -0.89 -46.06 10.55 21.66 0.23 -45.83 16 24 Si 0.99 41.70 29.57 68.60 2.03 43.72 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 H 0.05 1.77 7.53 -2.39 -0.02 1.75 16 29 H 0.04 1.42 5.78 -2.39 -0.01 1.41 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 3.36 4.57 -2.39 -0.01 3.35 16 32 H 0.03 1.21 7.22 -2.39 -0.02 1.20 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.84 7.60 -2.39 -0.02 1.82 16 35 H 0.41 13.85 5.82 -92.71 -0.54 13.31 16 36 H 0.14 2.80 6.41 -2.91 -0.02 2.78 16 37 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 38 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 39 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.06 2.78 6.49 -2.39 -0.02 2.77 16 41 H 0.05 2.56 7.13 -2.39 -0.02 2.54 16 42 H 0.06 2.21 5.75 -2.39 -0.01 2.19 16 43 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 Total: -1.00 -70.26 346.08 4.91 -65.35 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.52 Total: 29.70 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 5.32 Total: 17.53 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -3.57 Total: -96.92 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -0.10 Total: -55.72 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.70 Total: -3.66 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -70.26 4.91 -65.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120851842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.683 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds