Wall clock time and date at job start Tue Mar 31 2020 14:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47012 * 119.99269 * 2 1 3 5 5 H 1.08994 * 109.47581 * 301.84550 * 4 2 1 6 6 N 1.46508 * 109.46560 * 61.84446 * 4 2 1 7 7 C 1.34774 * 119.99915 * 274.99191 * 6 4 2 8 8 O 1.21571 * 120.00062 * 0.02562 * 7 6 4 9 9 C 1.47686 * 120.00056 * 179.97438 * 7 6 4 10 10 C 1.39668 * 120.16564 * 0.02562 * 9 7 6 11 11 C 1.37856 * 119.87524 * 180.29357 * 10 9 7 12 12 C 1.38460 * 120.22219 * 359.45263 * 11 10 9 13 13 C 1.38198 * 120.33586 * 0.55239 * 12 11 10 14 14 C 1.38328 * 120.12151 * 359.72489 * 13 12 11 15 15 F 1.35093 * 120.11387 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47173 * 181.83987 * 4 2 1 17 17 O 1.21297 * 119.99762 * 269.67833 * 16 4 2 18 18 N 1.34775 * 119.99934 * 89.67788 * 16 4 2 19 19 C 1.46499 * 119.99801 * 5.80711 * 18 16 4 20 20 C 1.37090 * 120.00280 * 185.81380 * 18 16 4 21 21 H 1.08005 * 119.99451 * 340.03327 * 20 18 16 22 22 C 1.38944 * 120.00373 * 160.03605 * 20 18 16 23 23 N 1.31414 * 120.00242 * 6.18413 * 22 20 18 24 24 Si 1.86804 * 120.00078 * 186.18798 * 22 20 18 25 25 H 1.48497 * 109.47401 * 90.00075 * 24 22 20 26 26 H 1.48502 * 109.47095 * 210.00011 * 24 22 20 27 27 H 1.48497 * 109.46939 * 329.99654 * 24 22 20 28 28 H 1.08999 * 109.46867 * 300.00095 * 1 2 3 29 29 H 1.09003 * 109.46726 * 60.00224 * 1 2 3 30 30 H 1.08996 * 109.46721 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47229 * 239.99909 * 2 1 3 32 32 H 1.09003 * 109.47078 * 184.03668 * 3 2 1 33 33 H 1.09003 * 109.47130 * 304.03895 * 3 2 1 34 34 H 1.08995 * 109.47482 * 64.03685 * 3 2 1 35 35 H 0.97002 * 119.99711 * 95.00322 * 6 4 2 36 36 H 1.07999 * 120.06363 * 0.02781 * 10 9 7 37 37 H 1.08001 * 119.88838 * 179.72364 * 11 10 9 38 38 H 1.08000 * 119.83126 * 180.27610 * 12 11 10 39 39 H 1.08005 * 119.94362 * 179.74642 * 13 12 11 40 40 H 1.08997 * 109.47334 * 6.25808 * 19 18 16 41 41 H 1.09000 * 109.47274 * 126.25310 * 19 18 16 42 42 H 1.09002 * 109.47411 * 246.25847 * 19 18 16 43 43 H 0.96993 * 120.00547 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6500 -0.2267 2.1389 6 7 1.5882 -2.1146 1.2273 7 6 0.3669 -2.4345 1.6990 8 8 -0.3601 -1.5667 2.1422 9 6 -0.0888 -3.8391 1.6763 10 6 0.7433 -4.8388 1.1674 11 6 0.3095 -6.1471 1.1435 12 6 -0.9436 -6.4749 1.6327 13 6 -1.7743 -5.4930 2.1382 14 6 -1.3556 -4.1748 2.1637 15 9 -2.1676 -3.2151 2.6584 16 6 3.5464 -0.6817 1.2724 17 8 4.1844 -1.5726 0.7521 18 7 4.1846 0.3433 1.8710 19 6 3.4197 1.3519 2.6086 20 6 5.5495 0.4424 1.7896 21 1 6.1402 -0.4276 1.5432 22 6 6.1729 1.6618 2.0242 23 7 5.4691 2.6899 2.4421 24 14 8.0114 1.8398 1.7454 25 1 8.2609 2.2639 0.3443 26 1 8.5566 2.8606 2.6761 27 1 8.6783 0.5365 1.9944 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1276 1.4435 -0.0723 33 1 1.6188 1.9769 -0.8516 34 1 1.7370 1.9351 0.9239 35 1 2.1682 -2.8069 0.8735 36 1 1.7231 -4.5867 0.7893 37 1 0.9510 -6.9196 0.7460 38 1 -1.2753 -7.5025 1.6151 39 1 -2.7522 -5.7552 2.5144 40 1 2.3735 1.0501 2.6581 41 1 3.8193 1.4441 3.6185 42 1 3.4971 2.3118 2.0981 43 1 5.9042 3.5412 2.6055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120851989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:54 Heat of formation + Delta-G solvation = -72.123284 kcal Electronic energy + Delta-G solvation = -28080.996732 eV Core-core repulsion = 24041.607244 eV Total energy + Delta-G solvation = -4039.389488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.88484 -40.35069 -39.05781 -38.01680 -35.43081 -34.85186 -33.27020 -31.59811 -31.32988 -30.67843 -27.57574 -26.55319 -26.03208 -24.41161 -23.68837 -22.66676 -20.62040 -20.38369 -19.15942 -18.00919 -17.31067 -16.90531 -16.52261 -16.11704 -15.83489 -15.36441 -15.25453 -15.11324 -14.59274 -14.52911 -14.06810 -14.03207 -13.68067 -13.23449 -13.03213 -12.79029 -12.33709 -12.33368 -12.24774 -11.99323 -11.86783 -11.76309 -11.50614 -11.37644 -11.07070 -10.92666 -10.90872 -10.47985 -10.41498 -10.31861 -10.13228 -9.69324 -9.38140 -9.05190 -8.96980 -8.77998 -8.37095 -7.85242 -6.30652 -3.93619 0.54772 0.93434 2.81807 3.09672 3.21061 3.22312 3.27795 3.60628 3.78002 4.02858 4.09211 4.43585 4.57586 4.70759 4.74872 4.98287 5.01833 5.07562 5.35094 5.38504 5.46100 5.54880 5.73764 5.75538 5.82139 5.89957 5.90815 6.07119 6.10612 6.12752 6.30469 6.37559 6.42312 6.50020 6.55430 6.68028 6.82480 6.88652 6.99405 7.37331 7.52852 7.74504 8.02102 8.38002 8.42298 9.08942 9.33899 9.85450 10.63166 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.003425 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.429686 B = 8173.205457 C = 8845.090505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 C -0.151 4.151 4 C 0.134 3.866 5 H 0.104 0.896 6 N -0.699 5.699 7 C 0.554 3.446 8 O -0.525 6.525 9 C -0.167 4.167 10 C -0.057 4.057 11 C -0.140 4.140 12 C -0.069 4.069 13 C -0.169 4.169 14 C 0.157 3.843 15 F -0.115 7.115 16 C 0.438 3.562 17 O -0.596 6.596 18 N -0.433 5.433 19 C 0.098 3.902 20 C -0.305 4.305 21 H 0.102 0.898 22 C 0.033 3.967 23 N -0.881 5.881 24 Si 0.930 3.070 25 H -0.276 1.276 26 H -0.283 1.283 27 H -0.270 1.270 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.406 0.594 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.030 0.970 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.001 -12.207 -2.296 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 C -0.209 4.209 4 C 0.027 3.973 5 H 0.121 0.879 6 N -0.351 5.351 7 C 0.340 3.660 8 O -0.403 6.403 9 C -0.171 4.171 10 C -0.075 4.075 11 C -0.158 4.158 12 C -0.087 4.087 13 C -0.187 4.187 14 C 0.137 3.863 15 F -0.093 7.093 16 C 0.225 3.775 17 O -0.482 6.482 18 N -0.150 5.150 19 C -0.045 4.045 20 C -0.433 4.433 21 H 0.119 0.881 22 C -0.170 4.170 23 N -0.521 5.521 24 Si 0.757 3.243 25 H -0.202 1.202 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.243 0.757 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.146 -11.711 -2.115 17.004 hybrid contribution 1.028 0.091 -0.073 1.035 sum -11.118 -11.620 -2.188 16.230 Atomic orbital electron populations 1.21869 0.94430 1.01569 1.01309 1.21339 0.96013 0.96798 0.97050 1.22022 1.02697 0.94458 1.01742 1.21061 0.94170 0.81684 1.00420 0.87861 1.45712 1.16466 1.10217 1.62742 1.17895 0.82050 0.87440 0.78618 1.90830 1.54269 1.49233 1.45921 1.20184 0.95200 0.95103 1.06651 1.21388 0.98965 0.92213 0.94959 1.21179 0.96771 0.96385 1.01445 1.21196 0.93319 0.99303 0.94903 1.21156 1.02105 0.90931 1.04552 1.17727 0.87704 0.85937 0.94947 1.91597 1.71025 1.62570 1.84088 1.19734 0.87826 0.85556 0.84344 1.90484 1.67542 1.38869 1.51318 1.43580 1.06801 1.21742 1.42896 1.22178 0.91006 0.93682 0.97675 1.19721 0.80994 0.96318 1.46279 0.88053 1.25399 1.00653 0.94866 0.96042 1.70039 1.35775 1.02257 1.44018 0.85860 0.81898 0.78252 0.78289 1.20232 1.20896 1.19441 0.91885 0.93627 0.93195 0.91094 0.90950 0.93059 0.91944 0.75684 0.84237 0.84636 0.84643 0.84183 0.95177 0.92734 0.88878 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 7.74 37.16 0.29 -1.90 16 2 C -0.09 -1.63 2.69 -90.61 -0.24 -1.87 16 3 C -0.15 -2.70 7.51 37.16 0.28 -2.42 16 4 C 0.13 2.62 1.84 -69.08 -0.13 2.49 16 5 H 0.10 2.09 5.15 -51.93 -0.27 1.82 16 6 N -0.70 -12.11 4.92 -55.93 -0.28 -12.38 16 7 C 0.55 9.37 6.20 -12.40 -0.08 9.30 16 8 O -0.52 -10.21 12.46 5.30 0.07 -10.14 16 9 C -0.17 -2.31 5.88 -104.91 -0.62 -2.93 16 10 C -0.06 -0.62 9.54 -39.19 -0.37 -0.99 16 11 C -0.14 -1.17 10.03 -39.64 -0.40 -1.57 16 12 C -0.07 -0.53 10.03 -39.51 -0.40 -0.92 16 13 C -0.17 -1.60 10.01 -39.56 -0.40 -2.00 16 14 C 0.16 2.07 7.29 -38.96 -0.28 1.79 16 15 F -0.11 -1.77 15.55 2.25 0.04 -1.73 16 16 C 0.44 10.30 5.93 -10.98 -0.07 10.23 16 17 O -0.60 -15.38 15.76 5.54 0.09 -15.30 16 18 N -0.43 -10.77 2.38 -122.19 -0.29 -11.06 16 19 C 0.10 2.20 6.74 59.85 0.40 2.60 16 20 C -0.31 -8.24 9.41 -14.94 -0.14 -8.38 16 21 H 0.10 2.86 7.31 -52.48 -0.38 2.48 16 22 C 0.03 0.85 5.46 -17.47 -0.10 0.76 16 23 N -0.88 -22.46 9.80 55.50 0.54 -21.92 16 24 Si 0.93 20.32 29.56 -169.99 -5.02 15.30 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H 0.06 1.08 7.65 -51.93 -0.40 0.68 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.83 5.73 -51.93 -0.30 0.54 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.51 6.59 -51.93 -0.34 1.17 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.09 6.22 -51.93 -0.32 0.77 16 35 H 0.41 6.63 5.88 -40.82 -0.24 6.39 16 36 H 0.14 1.41 6.41 -52.49 -0.34 1.07 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 40 H 0.03 0.60 4.47 -51.93 -0.23 0.37 16 41 H 0.05 1.29 7.76 -51.93 -0.40 0.89 16 42 H 0.09 2.18 5.86 -51.93 -0.30 1.87 16 43 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -30.74 343.98 -7.12 -37.85 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.20 Total: 10.01 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -2.24 Total: 4.19 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.02 Total: -45.36 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.15 Total: -25.44 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.74 -7.12 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120851989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.271 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds