Wall clock time and date at job start Tue Mar 31 2020 14:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47012 * 119.99269 * 2 1 3 5 5 H 1.08994 * 109.47581 * 301.84550 * 4 2 1 6 6 N 1.46508 * 109.46560 * 61.84446 * 4 2 1 7 7 C 1.34774 * 119.99915 * 274.99191 * 6 4 2 8 8 O 1.21571 * 120.00062 * 0.02562 * 7 6 4 9 9 C 1.47686 * 120.00056 * 179.97438 * 7 6 4 10 10 C 1.39668 * 120.16564 * 0.02562 * 9 7 6 11 11 C 1.37856 * 119.87524 * 180.29357 * 10 9 7 12 12 C 1.38460 * 120.22219 * 359.45263 * 11 10 9 13 13 C 1.38198 * 120.33586 * 0.55239 * 12 11 10 14 14 C 1.38328 * 120.12151 * 359.72489 * 13 12 11 15 15 F 1.35093 * 120.11387 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47173 * 181.83987 * 4 2 1 17 17 O 1.21297 * 119.99762 * 269.67833 * 16 4 2 18 18 N 1.34775 * 119.99934 * 89.67788 * 16 4 2 19 19 C 1.46499 * 119.99801 * 5.80711 * 18 16 4 20 20 C 1.37090 * 120.00280 * 185.81380 * 18 16 4 21 21 H 1.08005 * 119.99451 * 340.03327 * 20 18 16 22 22 C 1.38944 * 120.00373 * 160.03605 * 20 18 16 23 23 N 1.31414 * 120.00242 * 6.18413 * 22 20 18 24 24 Si 1.86804 * 120.00078 * 186.18798 * 22 20 18 25 25 H 1.48497 * 109.47401 * 90.00075 * 24 22 20 26 26 H 1.48502 * 109.47095 * 210.00011 * 24 22 20 27 27 H 1.48497 * 109.46939 * 329.99654 * 24 22 20 28 28 H 1.08999 * 109.46867 * 300.00095 * 1 2 3 29 29 H 1.09003 * 109.46726 * 60.00224 * 1 2 3 30 30 H 1.08996 * 109.46721 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47229 * 239.99909 * 2 1 3 32 32 H 1.09003 * 109.47078 * 184.03668 * 3 2 1 33 33 H 1.09003 * 109.47130 * 304.03895 * 3 2 1 34 34 H 1.08995 * 109.47482 * 64.03685 * 3 2 1 35 35 H 0.97002 * 119.99711 * 95.00322 * 6 4 2 36 36 H 1.07999 * 120.06363 * 0.02781 * 10 9 7 37 37 H 1.08001 * 119.88838 * 179.72364 * 11 10 9 38 38 H 1.08000 * 119.83126 * 180.27610 * 12 11 10 39 39 H 1.08005 * 119.94362 * 179.74642 * 13 12 11 40 40 H 1.08997 * 109.47334 * 6.25808 * 19 18 16 41 41 H 1.09000 * 109.47274 * 126.25310 * 19 18 16 42 42 H 1.09002 * 109.47411 * 246.25847 * 19 18 16 43 43 H 0.96993 * 120.00547 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6500 -0.2267 2.1389 6 7 1.5882 -2.1146 1.2273 7 6 0.3669 -2.4345 1.6990 8 8 -0.3601 -1.5667 2.1422 9 6 -0.0888 -3.8391 1.6763 10 6 0.7433 -4.8388 1.1674 11 6 0.3095 -6.1471 1.1435 12 6 -0.9436 -6.4749 1.6327 13 6 -1.7743 -5.4930 2.1382 14 6 -1.3556 -4.1748 2.1637 15 9 -2.1676 -3.2151 2.6584 16 6 3.5464 -0.6817 1.2724 17 8 4.1844 -1.5726 0.7521 18 7 4.1846 0.3433 1.8710 19 6 3.4197 1.3519 2.6086 20 6 5.5495 0.4424 1.7896 21 1 6.1402 -0.4276 1.5432 22 6 6.1729 1.6618 2.0242 23 7 5.4691 2.6899 2.4421 24 14 8.0114 1.8398 1.7454 25 1 8.2609 2.2639 0.3443 26 1 8.5566 2.8606 2.6761 27 1 8.6783 0.5365 1.9944 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1276 1.4435 -0.0723 33 1 1.6188 1.9769 -0.8516 34 1 1.7370 1.9351 0.9239 35 1 2.1682 -2.8069 0.8735 36 1 1.7231 -4.5867 0.7893 37 1 0.9510 -6.9196 0.7460 38 1 -1.2753 -7.5025 1.6151 39 1 -2.7522 -5.7552 2.5144 40 1 2.3735 1.0501 2.6581 41 1 3.8193 1.4441 3.6185 42 1 3.4971 2.3118 2.0981 43 1 5.9042 3.5412 2.6055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120851989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:53 Heat of formation + Delta-G solvation = -90.686449 kcal Electronic energy + Delta-G solvation = -28081.801691 eV Core-core repulsion = 24041.607244 eV Total energy + Delta-G solvation = -4040.194447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.91048 -41.77637 -40.43043 -39.22757 -37.03829 -36.74506 -34.65295 -33.55582 -32.28349 -31.47633 -29.24618 -28.09389 -27.71158 -26.10838 -24.82336 -23.53679 -22.12560 -21.72773 -20.66480 -19.35091 -18.87431 -18.40032 -17.70886 -17.56969 -17.05238 -16.73862 -16.52786 -16.48899 -16.07693 -15.80489 -15.68090 -15.46150 -14.92419 -14.58961 -14.24965 -14.14005 -13.92932 -13.83407 -13.53809 -13.33879 -13.23551 -13.07289 -12.96424 -12.75034 -12.73338 -12.44837 -12.30901 -12.28085 -12.12102 -11.97114 -11.70054 -11.03696 -10.98372 -10.50714 -10.23132 -10.02183 -9.83182 -9.77173 -8.27115 -5.99034 -0.33765 0.15858 1.35311 1.41318 1.52901 1.71372 1.80437 2.01837 2.29180 2.67410 2.93945 3.10714 3.17613 3.50214 3.69491 3.82068 3.84612 3.87957 3.98942 4.19972 4.27897 4.30567 4.31214 4.59580 4.67635 4.73151 4.76856 4.91993 4.94412 4.99007 5.01590 5.07606 5.10984 5.20906 5.23089 5.34956 5.37005 5.41442 5.42171 5.53700 5.81000 6.02427 6.38133 6.45082 7.06134 7.10209 7.39449 7.90958 8.64983 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.003425 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.429686 B = 8173.205457 C = 8845.090505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.146 3.854 5 H 0.095 0.905 6 N -0.699 5.699 7 C 0.553 3.447 8 O -0.557 6.557 9 C -0.195 4.195 10 C -0.064 4.064 11 C -0.130 4.130 12 C -0.050 4.050 13 C -0.162 4.162 14 C 0.127 3.873 15 F -0.138 7.138 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.445 5.445 19 C 0.113 3.887 20 C -0.343 4.343 21 H 0.079 0.921 22 C 0.003 3.997 23 N -0.891 5.891 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.410 0.590 36 H 0.141 0.859 37 H 0.170 0.830 38 H 0.180 0.820 39 H 0.165 0.835 40 H 0.052 0.948 41 H 0.037 0.963 42 H 0.085 0.915 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.759 -14.099 -2.992 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.107 4.107 3 C -0.202 4.202 4 C 0.037 3.963 5 H 0.112 0.888 6 N -0.352 5.352 7 C 0.342 3.658 8 O -0.437 6.437 9 C -0.199 4.199 10 C -0.082 4.082 11 C -0.147 4.147 12 C -0.068 4.068 13 C -0.181 4.181 14 C 0.107 3.893 15 F -0.116 7.116 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.162 5.162 19 C -0.030 4.030 20 C -0.471 4.471 21 H 0.097 0.903 22 C -0.199 4.199 23 N -0.530 5.530 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.248 0.752 36 H 0.158 0.842 37 H 0.187 0.813 38 H 0.198 0.802 39 H 0.182 0.818 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.921 -13.605 -2.803 18.971 hybrid contribution 1.235 0.557 0.139 1.362 sum -11.686 -13.048 -2.664 17.717 Atomic orbital electron populations 1.21732 0.92800 1.01345 1.01980 1.21315 0.97104 0.96414 0.95819 1.21935 1.00437 0.94839 1.02962 1.20844 0.91024 0.83390 1.01016 0.88763 1.45670 1.16996 1.09294 1.63229 1.18417 0.81205 0.88826 0.77376 1.90796 1.54958 1.50596 1.47321 1.20041 0.96530 0.93637 1.09699 1.21524 0.98743 0.93003 0.94967 1.21617 0.97462 0.95688 0.99965 1.21742 0.92195 1.00820 0.92000 1.21512 1.03422 0.89412 1.03716 1.18166 0.87613 0.87084 0.96436 1.91531 1.71586 1.63781 1.84700 1.20378 0.89472 0.84534 0.83185 1.90445 1.68745 1.39743 1.52266 1.43737 1.06561 1.22470 1.43439 1.22017 0.91810 0.92986 0.96197 1.19694 0.82142 0.96463 1.48794 0.90319 1.26114 1.04616 0.94151 0.95055 1.70118 1.37196 1.02470 1.43197 0.84952 0.76924 0.78176 0.78400 1.19796 1.19547 1.19690 0.92819 0.91200 0.93899 0.91335 0.94328 0.90467 0.91887 0.75191 0.84154 0.81289 0.80234 0.81761 0.92959 0.94392 0.89665 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.88 7.74 71.98 0.56 -3.33 16 2 C -0.09 -3.07 2.69 -10.79 -0.03 -3.10 16 3 C -0.14 -5.13 7.51 71.98 0.54 -4.59 16 4 C 0.15 5.83 1.84 44.24 0.08 5.91 16 5 H 0.09 3.94 5.15 -2.39 -0.01 3.93 16 6 N -0.70 -24.95 4.92 -449.12 -2.21 -27.16 16 7 C 0.55 19.28 6.20 86.74 0.54 19.82 16 8 O -0.56 -22.43 12.46 -3.94 -0.05 -22.48 16 9 C -0.20 -5.40 5.88 -20.05 -0.12 -5.52 16 10 C -0.06 -1.31 9.54 22.52 0.21 -1.09 16 11 C -0.13 -1.69 10.03 22.23 0.22 -1.47 16 12 C -0.05 -0.54 10.03 22.31 0.22 -0.31 16 13 C -0.16 -2.63 10.01 22.28 0.22 -2.40 16 14 C 0.13 3.30 7.29 22.68 0.17 3.46 16 15 F -0.14 -4.36 15.55 44.97 0.70 -3.66 16 16 C 0.44 21.23 5.93 87.66 0.52 21.75 16 17 O -0.62 -33.42 15.76 -3.08 -0.05 -33.46 16 18 N -0.45 -22.95 2.38 -658.89 -1.57 -24.52 16 19 C 0.11 5.22 6.74 127.77 0.86 6.09 16 20 C -0.34 -19.17 9.41 84.04 0.79 -18.38 16 21 H 0.08 4.66 7.31 -2.91 -0.02 4.63 16 22 C 0.00 0.13 5.46 84.92 0.46 0.60 16 23 N -0.89 -45.78 9.80 21.66 0.21 -45.57 16 24 Si 0.99 41.82 29.56 68.60 2.03 43.85 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 28 H 0.05 1.82 7.65 -2.39 -0.02 1.80 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.43 5.73 -2.39 -0.01 1.42 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.04 1.63 6.59 -2.39 -0.02 1.62 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.21 6.22 -2.39 -0.01 2.19 16 35 H 0.41 13.82 5.88 -92.71 -0.54 13.28 16 36 H 0.14 2.77 6.41 -2.91 -0.02 2.75 16 37 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 39 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.05 2.16 4.47 -2.39 -0.01 2.14 16 41 H 0.04 1.85 7.76 -2.39 -0.02 1.83 16 42 H 0.09 4.08 5.86 -2.39 -0.01 4.07 16 43 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -69.90 343.98 4.83 -65.07 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 0.52 Total: 30.51 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 5.26 Total: 17.43 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -3.57 Total: -97.26 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -0.10 Total: -55.94 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.70 Total: -3.66 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -69.90 4.83 -65.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120851989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.617 kcal (2) G-P(sol) polarization free energy of solvation -69.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds