Wall clock time and date at job start Tue Mar 31 2020 13:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47314 * 2 1 4 4 C 1.52995 * 109.47526 * 119.99960 * 2 1 3 5 5 C 1.50703 * 109.47073 * 67.28746 * 4 2 1 6 6 N 1.28640 * 124.71306 * 96.39730 * 5 4 2 7 7 C 1.33574 * 115.77369 * 180.02562 * 6 5 4 8 8 C 1.47173 * 123.15815 * 179.97438 * 7 6 5 9 9 O 1.21663 * 119.99981 * 174.04678 * 8 7 6 10 10 N 1.34770 * 119.99817 * 354.05448 * 8 7 6 11 11 C 1.36960 * 120.00449 * 4.68265 * 10 8 7 12 12 H 1.07992 * 120.00008 * 113.90031 * 11 10 8 13 13 C 1.38981 * 119.99355 * 293.90804 * 11 10 8 14 14 N 1.31407 * 120.00455 * 357.72474 * 13 11 10 15 15 Si 1.86802 * 119.99442 * 177.72256 * 13 11 10 16 16 H 1.48505 * 109.46851 * 92.64732 * 15 13 11 17 17 H 1.48497 * 109.47233 * 212.64464 * 15 13 11 18 18 H 1.48501 * 109.47553 * 332.64462 * 15 13 11 19 19 C 1.46501 * 119.99983 * 184.68343 * 10 8 7 20 20 C 1.55247 * 110.58051 * 230.55696 * 19 10 8 21 21 C 1.54894 * 102.58593 * 203.33924 * 20 19 10 22 22 C 1.54269 * 104.31265 * 37.93318 * 21 20 19 23 23 C 1.53871 * 106.59704 * 336.32075 * 22 21 20 24 24 C 1.35300 * 113.69087 * 0.24239 * 7 6 5 25 25 S 1.70767 * 124.70768 * 276.39469 * 5 4 2 26 26 H 1.09000 * 109.47434 * 59.99562 * 1 2 3 27 27 H 1.08998 * 109.47039 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46667 * 300.00149 * 1 2 3 29 29 H 1.09008 * 109.47387 * 240.00286 * 2 1 3 30 30 H 1.09003 * 109.47699 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47155 * 300.00165 * 3 2 1 32 32 H 1.09003 * 109.47356 * 59.99745 * 3 2 1 33 33 H 1.08999 * 109.46995 * 307.28768 * 4 2 1 34 34 H 1.08999 * 109.47771 * 187.28738 * 4 2 1 35 35 H 0.96997 * 119.99911 * 180.02562 * 14 13 11 36 36 H 1.08999 * 110.43614 * 353.14130 * 19 10 8 37 37 H 1.08996 * 110.89582 * 85.04921 * 20 19 10 38 38 H 1.08993 * 110.76307 * 321.57227 * 20 19 10 39 39 H 1.08999 * 110.48063 * 279.18944 * 21 20 19 40 40 H 1.09001 * 110.48266 * 156.67748 * 21 20 19 41 41 H 1.08993 * 110.02938 * 95.60868 * 22 21 20 42 42 H 1.09001 * 110.02951 * 216.98629 * 22 21 20 43 43 H 1.09008 * 110.02917 * 119.28522 * 23 22 21 44 44 H 1.08996 * 110.03310 * 240.66210 * 23 22 21 45 45 H 1.08003 * 125.59207 * 179.72017 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6903 -2.1845 1.1624 6 7 2.4855 -3.1041 0.7419 7 6 1.9897 -4.3444 0.7397 8 6 2.7573 -5.5174 0.2915 9 8 2.2895 -6.6337 0.4145 10 7 3.9785 -5.3549 -0.2549 11 6 4.5458 -4.1093 -0.3060 12 1 5.4349 -3.8970 0.2690 13 6 3.9769 -3.1187 -1.0976 14 7 2.9212 -3.3897 -1.8316 15 14 4.7132 -1.4021 -1.1181 16 1 5.6958 -1.2981 -2.2267 17 1 3.6333 -0.4026 -1.3184 18 1 5.3959 -1.1407 0.1746 19 6 4.6993 -6.5106 -0.7944 20 6 6.1437 -6.5659 -0.2280 21 6 6.8947 -7.3950 -1.2994 22 6 6.2904 -6.9246 -2.6385 23 6 4.8946 -6.3623 -2.3174 24 6 0.7135 -4.4204 1.1826 25 16 0.1833 -2.8522 1.6087 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.5742 -0.2882 2.1344 34 1 3.1222 -0.6097 1.3168 35 1 2.5245 -2.6983 -2.3844 36 1 4.1648 -7.4328 -0.5663 37 1 6.1638 -7.0727 0.7367 38 1 6.5661 -5.5644 -0.1484 39 1 6.7147 -8.4600 -1.1528 40 1 7.9632 -7.1815 -1.2670 41 1 6.9148 -6.1461 -3.0769 42 1 6.2057 -7.7661 -3.3260 43 1 4.8415 -5.3108 -2.6000 44 1 4.1317 -6.9305 -2.8495 45 1 0.1266 -5.3241 1.2566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125271120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:46 Heat of formation + Delta-G solvation = -7.715249 kcal Electronic energy + Delta-G solvation = -26802.394067 eV Core-core repulsion = 23332.010697 eV Total energy + Delta-G solvation = -3470.383370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30724 -39.79517 -38.27449 -37.20269 -35.84504 -33.14594 -31.82597 -29.48592 -28.82536 -28.43894 -28.04619 -26.74445 -25.34974 -22.56104 -21.50981 -21.07794 -20.86258 -20.43089 -19.52434 -17.90558 -17.31027 -16.96523 -16.62577 -16.04371 -16.02173 -15.89041 -15.64565 -15.22073 -14.94797 -14.40928 -14.21864 -14.15032 -13.95140 -13.51724 -13.26687 -13.10087 -13.03746 -13.00129 -12.71061 -12.66808 -12.54127 -12.14381 -12.04000 -11.98803 -11.97960 -11.86730 -11.75346 -11.37968 -11.23481 -11.21642 -10.92291 -10.70174 -10.20995 -9.63065 -9.45557 -8.91554 -8.07165 -6.03838 -0.14919 0.62136 0.91935 1.38756 1.48208 1.56906 1.60632 2.46220 2.83633 3.08920 3.37163 3.40663 3.87882 3.91348 3.98299 3.99847 4.11539 4.15299 4.36598 4.43875 4.56178 4.65184 4.67216 4.69024 4.74246 4.75794 4.79669 4.83780 4.90115 4.90995 5.01815 5.05702 5.08644 5.16175 5.22411 5.24075 5.34688 5.44321 5.46176 5.48691 5.55893 5.59307 5.68368 6.24794 6.69423 7.04052 7.30387 7.68894 8.12366 8.99658 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.005682 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.508422 B = 4926.507240 C = 6123.367838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.140 4.140 4 C -0.036 4.036 5 C -0.007 4.007 6 N -0.382 5.382 7 C 0.053 3.947 8 C 0.552 3.448 9 O -0.642 6.642 10 N -0.426 5.426 11 C -0.346 4.346 12 H 0.063 0.937 13 C 0.097 3.903 14 N -0.890 5.890 15 Si 0.934 3.066 16 H -0.302 1.302 17 H -0.234 1.234 18 H -0.270 1.270 19 C 0.121 3.879 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.277 4.277 25 S 0.221 5.779 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.035 0.965 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 7.989 3.716 8.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 C -0.197 4.197 4 C -0.076 4.076 5 C -0.287 4.287 6 N -0.095 5.095 7 C -0.082 4.082 8 C 0.341 3.659 9 O -0.531 6.531 10 N -0.142 5.142 11 C -0.473 4.473 12 H 0.081 0.919 13 C -0.110 4.110 14 N -0.526 5.526 15 Si 0.759 3.241 16 H -0.230 1.230 17 H -0.157 1.157 18 H -0.195 1.195 19 C 0.018 3.982 20 C -0.157 4.157 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.155 4.155 24 C -0.419 4.419 25 S 0.478 5.522 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.090 8.055 3.859 9.173 hybrid contribution 0.674 -0.496 -0.811 1.166 sum -1.416 7.559 3.048 8.273 Atomic orbital electron populations 1.21961 0.93722 1.01727 1.03205 1.21266 0.97253 0.96925 0.96692 1.21802 1.00542 0.94138 1.03233 1.20447 1.02303 0.84475 1.00408 1.27966 0.94668 1.02170 1.03897 1.67630 1.32606 0.98398 1.10846 1.20150 0.92586 0.92313 1.03132 1.18157 0.83443 0.86141 0.78191 1.90544 1.72612 1.26506 1.63460 1.43161 1.13966 1.07693 1.49356 1.18702 1.13000 0.86517 1.29120 0.91913 1.25638 0.93535 1.00965 0.90823 1.69988 1.21670 1.34432 1.26482 0.86097 0.78765 0.81824 0.77390 1.22984 1.15747 1.19522 1.22136 0.93258 0.89112 0.93725 1.22704 0.94051 1.00754 0.98226 1.22250 0.99771 0.99364 0.93252 1.22026 0.94447 1.00386 0.97972 1.22218 0.97234 1.00977 0.95115 1.26654 0.99859 1.05498 1.09874 1.81665 1.17491 0.94387 1.58650 0.91863 0.93730 0.90080 0.93283 0.93637 0.91839 0.90055 0.86648 0.90707 0.93103 0.92391 0.92395 0.91381 0.90747 0.89663 0.91680 0.90609 0.92592 0.94626 0.81107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.88 71.98 0.64 -2.80 16 2 C -0.10 -2.80 2.16 -10.80 -0.02 -2.83 16 3 C -0.14 -3.05 8.92 71.98 0.64 -2.41 16 4 C -0.04 -1.04 4.66 29.85 0.14 -0.90 16 5 C -0.01 -0.25 6.19 88.58 0.55 0.30 16 6 N -0.38 -17.69 5.07 -180.85 -0.92 -18.61 16 7 C 0.05 2.68 5.70 40.55 0.23 2.91 16 8 C 0.55 31.13 7.18 86.59 0.62 31.76 16 9 O -0.64 -38.29 16.10 -4.23 -0.07 -38.36 16 10 N -0.43 -22.76 2.35 -610.86 -1.44 -24.19 16 11 C -0.35 -18.23 6.05 84.07 0.51 -17.72 16 12 H 0.06 3.37 7.08 -2.91 -0.02 3.35 16 13 C 0.10 4.93 2.72 84.93 0.23 5.16 16 14 N -0.89 -48.01 11.81 21.67 0.26 -47.76 16 15 Si 0.93 40.15 26.60 68.60 1.82 41.97 16 16 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 17 H -0.23 -8.98 4.30 99.48 0.43 -8.55 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 C 0.12 5.73 3.25 46.19 0.15 5.88 16 20 C -0.12 -4.62 6.40 32.01 0.20 -4.41 16 21 C -0.11 -3.28 6.82 31.67 0.22 -3.06 16 22 C -0.11 -3.63 6.80 31.32 0.21 -3.42 16 23 C -0.12 -5.13 6.43 31.32 0.20 -4.92 16 24 C -0.28 -11.80 10.62 67.14 0.71 -11.09 16 25 S 0.22 7.00 20.87 -56.49 -1.18 5.82 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.18 5.80 -2.39 -0.01 1.16 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.74 5.88 -2.38 -0.01 1.73 16 30 H 0.04 1.07 7.91 -2.39 -0.02 1.05 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.39 6.92 -2.39 -0.02 2.37 16 35 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 36 H 0.06 2.92 6.99 -2.39 -0.02 2.90 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 38 H 0.07 2.81 6.59 -2.39 -0.02 2.79 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 2.82 7.07 -2.38 -0.02 2.80 16 44 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.17 7.05 8.04 -2.91 -0.02 7.03 16 Total: -1.00 -67.43 354.28 4.42 -63.01 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.70 Total: 25.66 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 5.24 Total: -7.55 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -2.10 Total: -90.56 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.07 Total: -38.36 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.82 Total: 41.97 kcal Atomic # 16 Polarization: 7.00 SS G_CDS: -1.18 Total: 5.82 kcal Total: -67.43 4.42 -63.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125271120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.292 kcal (2) G-P(sol) polarization free energy of solvation -67.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds