Wall clock time and date at job start Tue Mar 31 2020 12:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 C 1.53002 * 115.55209 * 303.01781 * 3 2 1 5 5 N 1.46509 * 109.46626 * 270.77780 * 4 3 2 6 6 C 1.34778 * 119.99417 * 185.02509 * 5 4 3 7 7 O 1.21589 * 120.00374 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99744 * 180.02562 * 6 5 4 9 9 C 1.40129 * 119.99877 * 175.19188 * 8 6 5 10 10 C 1.38692 * 120.08013 * 33.25305 * 9 8 6 11 11 C 1.38196 * 120.02308 * 179.76702 * 10 9 8 12 12 C 1.38546 * 120.17437 * 0.50878 * 11 10 9 13 13 F 1.35099 * 119.92071 * 179.76775 * 12 11 10 14 14 C 1.38345 * 120.15140 * 359.74556 * 12 11 10 15 15 C 1.38740 * 119.97331 * 359.97438 * 14 12 11 16 16 O 1.35779 * 120.07904 * 179.97438 * 15 14 12 17 17 C 1.34805 * 117.00864 * 5.65837 * 16 15 14 18 18 H 1.07998 * 119.99225 * 4.52375 * 17 16 15 19 19 C 1.38629 * 120.00614 * 184.52866 * 17 16 15 20 20 N 1.31582 * 119.99665 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00232 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47145 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47206 * 119.99692 * 21 19 17 24 24 H 1.48499 * 109.47006 * 239.99629 * 21 19 17 25 25 C 1.53003 * 117.51801 * 88.71873 * 3 2 1 26 26 C 1.53002 * 60.00108 * 107.47941 * 25 3 2 27 27 H 1.08998 * 109.46857 * 186.00146 * 1 2 3 28 28 H 1.09000 * 109.47273 * 306.00384 * 1 2 3 29 29 H 1.09002 * 109.46565 * 66.00537 * 1 2 3 30 30 H 1.09001 * 109.47474 * 240.00109 * 2 1 3 31 31 H 1.08996 * 109.47132 * 120.00017 * 2 1 3 32 32 H 1.08994 * 109.46895 * 30.77111 * 4 3 2 33 33 H 1.09000 * 109.47365 * 150.77779 * 4 3 2 34 34 H 0.96998 * 120.00237 * 5.02781 * 5 4 3 35 35 H 0.97001 * 119.99977 * 355.19108 * 8 6 5 36 36 H 1.08007 * 119.98441 * 0.02562 * 10 9 8 37 37 H 1.08001 * 119.91267 * 180.23005 * 11 10 9 38 38 H 1.07997 * 120.00812 * 180.02562 * 14 12 11 39 39 H 0.96992 * 119.99488 * 180.02562 * 20 19 17 40 40 H 1.09005 * 117.49856 * 214.96844 * 25 3 2 41 41 H 1.08996 * 117.49918 * 359.97438 * 25 3 2 42 42 H 1.08994 * 117.49518 * 252.50836 * 26 25 3 43 43 H 1.09003 * 117.49750 * 107.48939 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5508 2.3154 -1.1574 5 7 2.4768 2.1934 -2.2862 6 6 2.3031 2.9538 -3.3854 7 8 1.3777 3.7405 -3.4405 8 7 3.1546 2.8413 -4.4240 9 6 2.9172 3.5566 -5.6054 10 6 2.3214 4.8079 -5.5525 11 6 2.0922 5.5144 -6.7179 12 6 2.4464 4.9716 -7.9424 13 9 2.2157 5.6648 -9.0788 14 6 3.0364 3.7218 -8.0040 15 6 3.2747 3.0096 -6.8374 16 8 3.8530 1.7825 -6.8954 17 6 4.2784 1.3627 -8.1037 18 1 4.2189 2.0229 -8.9563 19 6 4.7921 0.0836 -8.2519 20 7 4.8650 -0.7205 -7.2130 21 14 5.3809 -0.4982 -9.9265 22 1 5.1921 0.5872 -10.9222 23 1 6.8204 -0.8543 -9.8488 24 1 4.5977 -1.6903 -10.3398 25 6 2.2470 2.1191 1.3566 26 6 3.4563 1.6911 0.5227 27 1 -0.3633 -1.0220 0.1074 28 1 -0.3634 0.6041 0.8313 29 1 -0.3632 0.4179 -0.9389 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.5579 1.9877 -1.4651 33 1 1.5064 3.3555 -0.8346 34 1 3.2148 1.5655 -2.2424 35 1 3.9319 2.2651 -4.3538 36 1 2.0403 5.2321 -4.5998 37 1 1.6315 6.4902 -6.6743 38 1 3.3120 3.3011 -8.9597 39 1 5.2247 -1.6153 -7.3166 40 1 2.0347 3.1861 1.4245 41 1 2.0195 1.5367 2.2494 42 1 4.0246 0.8270 0.8671 43 1 4.0396 2.4765 0.0420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135272306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:53 Heat of formation + Delta-G solvation = -56.085741 kcal Electronic energy + Delta-G solvation = -26799.059526 eV Core-core repulsion = 22760.365479 eV Total energy + Delta-G solvation = -4038.694048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.21876 -40.28993 -39.14090 -38.31617 -36.34523 -33.99727 -33.85714 -32.39446 -32.13577 -29.40969 -28.55631 -26.46948 -25.46598 -24.04662 -22.72508 -22.34754 -21.59940 -20.40283 -19.31315 -18.31925 -18.12612 -17.52554 -16.73702 -15.92541 -15.62229 -15.23078 -15.13461 -14.98742 -14.80206 -14.69051 -14.27413 -14.06998 -13.70727 -13.57542 -13.46489 -13.21457 -12.95050 -12.61989 -12.36917 -12.25318 -12.10551 -11.72752 -11.65118 -11.45464 -11.34548 -10.96430 -10.91712 -10.71094 -10.51028 -10.37408 -10.14358 -9.81744 -9.73579 -9.41269 -8.95708 -8.89660 -7.84295 -7.06149 -6.59596 -4.17189 1.88886 2.15551 2.85976 3.05945 3.08544 3.13737 3.49621 3.60210 3.85722 4.38163 4.38914 4.47503 4.53499 4.67093 4.77714 4.87967 4.98226 5.14490 5.17387 5.30850 5.40767 5.42454 5.54460 5.61713 5.67131 5.72492 5.77711 5.81754 5.89976 5.96783 6.03296 6.07139 6.17355 6.24269 6.55419 6.67378 6.73309 6.94182 6.97380 7.10266 7.18424 7.34811 7.69869 7.84913 8.31070 8.86009 8.89909 9.48751 10.57663 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010593 B = 0.003609 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.702150 B = 7756.222537 C = 9853.740549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 C -0.142 4.142 4 C 0.176 3.824 5 N -0.743 5.743 6 C 0.704 3.296 7 O -0.587 6.587 8 N -0.664 5.664 9 C 0.079 3.921 10 C -0.053 4.053 11 C -0.228 4.228 12 C 0.126 3.874 13 F -0.152 7.152 14 C -0.258 4.258 15 C 0.156 3.844 16 O -0.169 6.169 17 C -0.392 4.392 18 H 0.094 0.906 19 C 0.043 3.957 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.163 4.163 26 C -0.171 4.171 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.399 0.601 35 H 0.411 0.589 36 H 0.145 0.855 37 H 0.122 0.878 38 H 0.143 0.857 39 H 0.271 0.729 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 2.388 13.677 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 C -0.142 4.142 4 C 0.052 3.948 5 N -0.399 5.399 6 C 0.405 3.595 7 O -0.466 6.466 8 N -0.311 5.311 9 C -0.016 4.016 10 C -0.073 4.073 11 C -0.248 4.248 12 C 0.106 3.894 13 F -0.131 7.131 14 C -0.279 4.279 15 C 0.100 3.900 16 O -0.072 6.072 17 C -0.467 4.467 18 H 0.112 0.888 19 C -0.162 4.162 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.200 4.200 26 C -0.208 4.208 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.233 0.767 35 H 0.246 0.754 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.416 2.663 13.849 14.510 hybrid contribution 0.949 -0.865 -1.101 1.692 sum -2.467 1.798 12.747 13.108 Atomic orbital electron populations 1.21774 0.95357 1.01573 1.02263 1.21060 0.96175 0.92822 1.02259 1.21766 1.00242 0.96903 0.95291 1.20663 0.92520 0.98451 0.83172 1.45071 1.33952 1.44360 1.16473 1.15882 0.82186 0.81423 0.80057 1.90858 1.33790 1.40563 1.81399 1.42182 1.27788 1.48917 1.12216 1.16659 1.09866 0.92670 0.82393 1.20732 0.96785 0.91124 0.98696 1.20496 1.11255 1.02277 0.90773 1.17463 0.99721 0.90718 0.81449 1.91407 1.92757 1.79002 1.49925 1.20841 1.11290 0.95881 0.99860 1.18795 0.93238 0.86975 0.90966 1.83936 1.64677 1.25188 1.33431 1.21393 1.41045 0.99042 0.85266 0.88819 1.25272 0.96709 0.94648 0.99588 1.70026 1.42064 1.07772 1.29583 0.85626 0.78548 0.79157 0.80053 1.18949 1.20048 1.20068 1.23049 1.02339 1.00978 0.93658 1.23029 0.90477 1.03631 1.03652 0.92698 0.92599 0.92203 0.91175 0.91813 0.91021 0.91445 0.76734 0.75378 0.83748 0.85990 0.83996 0.91947 0.88580 0.88584 0.88528 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.51 37.16 0.35 -0.96 16 2 C -0.09 -0.75 5.87 -26.73 -0.16 -0.90 16 3 C -0.14 -1.28 1.71 -154.50 -0.26 -1.54 16 4 C 0.18 2.06 5.60 -4.04 -0.02 2.04 16 5 N -0.74 -9.98 5.42 -65.22 -0.35 -10.33 16 6 C 0.70 12.39 8.42 -86.91 -0.73 11.66 16 7 O -0.59 -11.91 13.66 5.29 0.07 -11.83 16 8 N -0.66 -12.38 5.21 -14.07 -0.07 -12.46 16 9 C 0.08 1.67 6.35 -83.44 -0.53 1.13 16 10 C -0.05 -1.04 8.71 -39.43 -0.34 -1.38 16 11 C -0.23 -4.31 10.02 -39.48 -0.40 -4.71 16 12 C 0.13 2.56 7.29 -39.43 -0.29 2.28 16 13 F -0.15 -2.95 17.26 2.25 0.04 -2.92 16 14 C -0.26 -5.69 9.11 -39.36 -0.36 -6.05 16 15 C 0.16 3.63 6.66 -38.94 -0.26 3.37 16 16 O -0.17 -4.43 9.30 0.03 0.00 -4.43 16 17 C -0.39 -10.33 9.45 30.88 0.29 -10.04 16 18 H 0.09 2.34 5.28 -52.49 -0.28 2.06 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 20 N -0.86 -23.46 13.67 55.48 0.76 -22.70 16 21 Si 0.94 19.72 29.55 -169.99 -5.02 14.69 16 22 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 C -0.16 -1.26 9.88 -26.73 -0.26 -1.52 16 26 C -0.17 -1.40 9.57 -26.73 -0.26 -1.66 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.58 6.67 -51.93 -0.35 0.24 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 32 H 0.07 0.91 6.21 -51.93 -0.32 0.58 16 33 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 34 H 0.40 4.69 8.28 -40.82 -0.34 4.36 16 35 H 0.41 7.25 8.56 -40.82 -0.35 6.90 16 36 H 0.15 2.78 6.07 -52.48 -0.32 2.46 16 37 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 38 H 0.14 3.13 5.70 -52.49 -0.30 2.84 16 39 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 40 H 0.10 0.73 8.04 -51.93 -0.42 0.31 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -29.77 365.06 -7.99 -37.77 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -5.59 Total: 13.98 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -3.32 Total: -7.27 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.33 Total: -45.49 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.07 Total: -16.26 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.77 -7.99 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135272306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.320 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds