Wall clock time and date at job start Tue Mar 31 2020 12:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 C 1.53002 * 115.55209 * 303.01781 * 3 2 1 5 5 N 1.46509 * 109.46626 * 270.77780 * 4 3 2 6 6 C 1.34778 * 119.99417 * 185.02509 * 5 4 3 7 7 O 1.21589 * 120.00374 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99744 * 180.02562 * 6 5 4 9 9 C 1.40129 * 119.99877 * 175.19188 * 8 6 5 10 10 C 1.38692 * 120.08013 * 33.25305 * 9 8 6 11 11 C 1.38196 * 120.02308 * 179.76702 * 10 9 8 12 12 C 1.38546 * 120.17437 * 0.50878 * 11 10 9 13 13 F 1.35099 * 119.92071 * 179.76775 * 12 11 10 14 14 C 1.38345 * 120.15140 * 359.74556 * 12 11 10 15 15 C 1.38740 * 119.97331 * 359.97438 * 14 12 11 16 16 O 1.35779 * 120.07904 * 179.97438 * 15 14 12 17 17 C 1.34805 * 117.00864 * 5.65837 * 16 15 14 18 18 H 1.07998 * 119.99225 * 4.52375 * 17 16 15 19 19 C 1.38629 * 120.00614 * 184.52866 * 17 16 15 20 20 N 1.31582 * 119.99665 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00232 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47145 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47206 * 119.99692 * 21 19 17 24 24 H 1.48499 * 109.47006 * 239.99629 * 21 19 17 25 25 C 1.53003 * 117.51801 * 88.71873 * 3 2 1 26 26 C 1.53002 * 60.00108 * 107.47941 * 25 3 2 27 27 H 1.08998 * 109.46857 * 186.00146 * 1 2 3 28 28 H 1.09000 * 109.47273 * 306.00384 * 1 2 3 29 29 H 1.09002 * 109.46565 * 66.00537 * 1 2 3 30 30 H 1.09001 * 109.47474 * 240.00109 * 2 1 3 31 31 H 1.08996 * 109.47132 * 120.00017 * 2 1 3 32 32 H 1.08994 * 109.46895 * 30.77111 * 4 3 2 33 33 H 1.09000 * 109.47365 * 150.77779 * 4 3 2 34 34 H 0.96998 * 120.00237 * 5.02781 * 5 4 3 35 35 H 0.97001 * 119.99977 * 355.19108 * 8 6 5 36 36 H 1.08007 * 119.98441 * 0.02562 * 10 9 8 37 37 H 1.08001 * 119.91267 * 180.23005 * 11 10 9 38 38 H 1.07997 * 120.00812 * 180.02562 * 14 12 11 39 39 H 0.96992 * 119.99488 * 180.02562 * 20 19 17 40 40 H 1.09005 * 117.49856 * 214.96844 * 25 3 2 41 41 H 1.08996 * 117.49918 * 359.97438 * 25 3 2 42 42 H 1.08994 * 117.49518 * 252.50836 * 26 25 3 43 43 H 1.09003 * 117.49750 * 107.48939 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5508 2.3154 -1.1574 5 7 2.4768 2.1934 -2.2862 6 6 2.3031 2.9538 -3.3854 7 8 1.3777 3.7405 -3.4405 8 7 3.1546 2.8413 -4.4240 9 6 2.9172 3.5566 -5.6054 10 6 2.3214 4.8079 -5.5525 11 6 2.0922 5.5144 -6.7179 12 6 2.4464 4.9716 -7.9424 13 9 2.2157 5.6648 -9.0788 14 6 3.0364 3.7218 -8.0040 15 6 3.2747 3.0096 -6.8374 16 8 3.8530 1.7825 -6.8954 17 6 4.2784 1.3627 -8.1037 18 1 4.2189 2.0229 -8.9563 19 6 4.7921 0.0836 -8.2519 20 7 4.8650 -0.7205 -7.2130 21 14 5.3809 -0.4982 -9.9265 22 1 5.1921 0.5872 -10.9222 23 1 6.8204 -0.8543 -9.8488 24 1 4.5977 -1.6903 -10.3398 25 6 2.2470 2.1191 1.3566 26 6 3.4563 1.6911 0.5227 27 1 -0.3633 -1.0220 0.1074 28 1 -0.3634 0.6041 0.8313 29 1 -0.3632 0.4179 -0.9389 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.5579 1.9877 -1.4651 33 1 1.5064 3.3555 -0.8346 34 1 3.2148 1.5655 -2.2424 35 1 3.9319 2.2651 -4.3538 36 1 2.0403 5.2321 -4.5998 37 1 1.6315 6.4902 -6.6743 38 1 3.3120 3.3011 -8.9597 39 1 5.2247 -1.6153 -7.3166 40 1 2.0347 3.1861 1.4245 41 1 2.0195 1.5367 2.2494 42 1 4.0246 0.8270 0.8671 43 1 4.0396 2.4765 0.0420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135272306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:52 Heat of formation + Delta-G solvation = -73.324431 kcal Electronic energy + Delta-G solvation = -26799.807052 eV Core-core repulsion = 22760.365479 eV Total energy + Delta-G solvation = -4039.441574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.81955 -41.76608 -40.54109 -39.43096 -38.03019 -35.54782 -35.07740 -34.30268 -32.81918 -31.09272 -30.10362 -27.69851 -27.27926 -24.75788 -24.13090 -23.43050 -23.05650 -21.82198 -20.32235 -20.07953 -19.64073 -18.98045 -18.25176 -17.16850 -16.98748 -16.77884 -16.56929 -16.39878 -16.01661 -15.92739 -15.87992 -15.38592 -15.23888 -15.08309 -14.85959 -14.57420 -14.08055 -13.84371 -13.71878 -13.45182 -13.38719 -13.06667 -13.00413 -12.58140 -12.35754 -12.32017 -12.15386 -12.12107 -11.67935 -11.67411 -11.37838 -11.08045 -11.05562 -10.82969 -10.69730 -10.11226 -9.53767 -8.72617 -8.50912 -6.16693 0.22254 0.47316 1.37548 1.43190 1.53464 1.57756 2.05254 2.14380 2.69494 2.80481 3.04488 3.18494 3.28524 3.46259 3.64459 3.75674 3.90207 3.96208 4.07974 4.17538 4.37804 4.46304 4.56610 4.62187 4.65608 4.70885 4.81396 4.83350 4.96409 5.02770 5.06164 5.13568 5.22152 5.23192 5.27446 5.30671 5.31532 5.33930 5.44986 5.47843 5.58284 5.91672 5.94987 6.08940 6.93880 6.94871 7.46060 7.63873 8.69958 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010593 B = 0.003609 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.702150 B = 7756.222537 C = 9853.740549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C -0.148 4.148 4 C 0.175 3.825 5 N -0.726 5.726 6 C 0.702 3.298 7 O -0.614 6.614 8 N -0.666 5.666 9 C 0.080 3.920 10 C -0.054 4.054 11 C -0.203 4.203 12 C 0.121 3.879 13 F -0.145 7.145 14 C -0.263 4.263 15 C 0.130 3.870 16 O -0.202 6.202 17 C -0.415 4.415 18 H 0.099 0.901 19 C -0.009 4.009 20 N -0.905 5.905 21 Si 1.011 2.989 22 H -0.257 1.257 23 H -0.266 1.266 24 H -0.270 1.270 25 C -0.149 4.149 26 C -0.169 4.169 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.408 0.592 35 H 0.413 0.587 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.136 0.864 39 H 0.274 0.726 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 3.135 14.492 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 C -0.149 4.149 4 C 0.052 3.948 5 N -0.381 5.381 6 C 0.402 3.598 7 O -0.495 6.495 8 N -0.313 5.313 9 C -0.016 4.016 10 C -0.074 4.074 11 C -0.223 4.223 12 C 0.101 3.899 13 F -0.124 7.124 14 C -0.284 4.284 15 C 0.077 3.923 16 O -0.108 6.108 17 C -0.491 4.491 18 H 0.116 0.884 19 C -0.208 4.208 20 N -0.542 5.542 21 Si 0.831 3.169 22 H -0.180 1.180 23 H -0.191 1.191 24 H -0.196 1.196 25 C -0.187 4.187 26 C -0.206 4.206 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.243 0.757 35 H 0.249 0.751 36 H 0.172 0.828 37 H 0.175 0.825 38 H 0.153 0.847 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.598 3.428 14.703 15.520 hybrid contribution 0.887 -0.898 -1.231 1.763 sum -2.711 2.530 13.472 13.973 Atomic orbital electron populations 1.21763 0.95405 1.02025 1.01669 1.21047 0.96122 0.92524 1.02390 1.21637 1.01303 0.96798 0.95163 1.20767 0.91793 0.98942 0.83302 1.45057 1.34173 1.43219 1.15660 1.16013 0.81659 0.81594 0.80495 1.90824 1.34730 1.41875 1.82026 1.42203 1.28210 1.48902 1.11954 1.16916 1.08908 0.93175 0.82614 1.20918 0.96427 0.90583 0.99494 1.20883 1.08688 1.03078 0.89622 1.17453 0.99934 0.90262 0.82267 1.91426 1.92663 1.78634 1.49629 1.20917 1.11402 0.96719 0.99376 1.19132 0.94296 0.86696 0.92213 1.83914 1.66651 1.26667 1.33530 1.21778 1.41841 0.99741 0.85707 0.88395 1.26366 0.96569 0.94407 1.03476 1.70133 1.43887 1.08349 1.31841 0.84619 0.78246 0.78677 0.75321 1.18032 1.19124 1.19559 1.23138 1.01085 1.01235 0.93193 1.23075 0.90167 1.03889 1.03503 0.92060 0.91684 0.93951 0.92549 0.90151 0.92052 0.91756 0.75658 0.75078 0.82799 0.82484 0.84651 0.91658 0.88391 0.86925 0.87414 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.51 71.98 0.68 -1.78 16 2 C -0.08 -1.35 5.87 30.59 0.18 -1.17 16 3 C -0.15 -2.48 1.71 -52.18 -0.09 -2.57 16 4 C 0.18 4.01 5.60 86.38 0.48 4.50 16 5 N -0.73 -19.39 5.42 -478.51 -2.59 -21.98 16 6 C 0.70 24.70 8.42 179.05 1.51 26.21 16 7 O -0.61 -24.64 13.66 -4.00 -0.05 -24.70 16 8 N -0.67 -25.14 5.21 -316.70 -1.65 -26.79 16 9 C 0.08 3.36 6.35 38.22 0.24 3.60 16 10 C -0.05 -2.04 8.71 22.37 0.19 -1.84 16 11 C -0.20 -7.18 10.02 22.33 0.22 -6.96 16 12 C 0.12 4.73 7.29 22.37 0.16 4.90 16 13 F -0.14 -5.35 17.26 44.97 0.78 -4.57 16 14 C -0.26 -11.70 9.11 22.42 0.20 -11.50 16 15 C 0.13 6.19 6.66 22.68 0.15 6.34 16 16 O -0.20 -11.00 9.30 -22.81 -0.21 -11.21 16 17 C -0.41 -22.57 9.45 67.91 0.64 -21.93 16 18 H 0.10 5.03 5.28 -2.91 -0.02 5.01 16 19 C -0.01 -0.46 5.49 84.82 0.47 0.01 16 20 N -0.91 -50.85 13.67 21.61 0.30 -50.55 16 21 Si 1.01 40.76 29.55 68.60 2.03 42.78 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 23 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 25 C -0.15 -1.96 9.88 30.60 0.30 -1.66 16 26 C -0.17 -2.47 9.57 30.60 0.29 -2.18 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.04 0.83 6.67 -2.39 -0.02 0.81 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.05 8.11 -2.39 -0.02 1.03 16 32 H 0.06 1.56 6.21 -2.39 -0.01 1.54 16 33 H 0.06 1.53 7.87 -2.39 -0.02 1.51 16 34 H 0.41 9.53 8.28 -92.71 -0.77 8.76 16 35 H 0.41 15.03 8.56 -92.71 -0.79 14.24 16 36 H 0.15 5.65 6.07 -2.91 -0.02 5.63 16 37 H 0.16 4.49 8.06 -2.91 -0.02 4.46 16 38 H 0.14 6.11 5.70 -2.91 -0.02 6.09 16 39 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.10 1.28 8.04 -2.38 -0.02 1.26 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -64.84 365.06 3.75 -61.09 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: -0.49 Total: 41.95 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 5.65 Total: -6.01 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -3.95 Total: -99.33 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.27 Total: -35.91 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Total: -64.84 3.75 -61.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135272306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.230 kcal (2) G-P(sol) polarization free energy of solvation -64.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds