Wall clock time and date at job start Tue Mar 31 2020 13:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46828 * 2 1 4 4 C 1.53006 * 109.47222 * 119.99892 * 2 1 3 5 5 C 1.50699 * 109.46868 * 175.00022 * 4 2 1 6 6 N 1.28649 * 124.71905 * 90.00348 * 5 4 2 7 7 C 1.33557 * 115.76516 * 179.97438 * 6 5 4 8 8 C 1.47270 * 123.14099 * 180.02562 * 7 6 5 9 9 O 1.21632 * 120.00199 * 174.06477 * 8 7 6 10 10 N 1.34775 * 119.99743 * 354.05746 * 8 7 6 11 11 C 1.46500 * 120.00172 * 3.90520 * 10 8 7 12 12 C 1.50700 * 109.47053 * 83.19016 * 11 10 8 13 13 H 1.07995 * 120.00467 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99734 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00486 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.47144 * 89.99942 * 16 14 12 18 18 H 1.48501 * 109.47611 * 210.00066 * 16 14 12 19 19 H 1.48506 * 109.47004 * 330.00590 * 16 14 12 20 20 C 1.46507 * 119.99849 * 183.90312 * 10 8 7 21 21 C 1.53001 * 109.46945 * 274.97186 * 20 10 8 22 22 C 1.52999 * 117.49933 * 243.74589 * 21 20 10 23 23 C 1.52998 * 117.49785 * 175.08998 * 21 20 10 24 24 C 1.35207 * 113.71932 * 0.26515 * 7 6 5 25 25 S 1.70769 * 124.72022 * 269.95792 * 5 4 2 26 26 H 1.09004 * 109.46981 * 299.99662 * 1 2 3 27 27 H 1.09001 * 109.47129 * 59.99781 * 1 2 3 28 28 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47395 * 240.00053 * 2 1 3 30 30 H 1.08996 * 109.47262 * 299.99585 * 3 2 1 31 31 H 1.09004 * 109.47064 * 60.00388 * 3 2 1 32 32 H 1.09010 * 109.46860 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46942 * 55.00106 * 4 2 1 34 34 H 1.08997 * 109.46646 * 295.00333 * 4 2 1 35 35 H 1.08997 * 109.47043 * 323.19232 * 11 10 8 36 36 H 1.08998 * 109.47032 * 203.18699 * 11 10 8 37 37 H 0.96998 * 120.00408 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.47056 * 34.97245 * 20 10 8 39 39 H 1.08998 * 109.46884 * 154.97683 * 20 10 8 40 40 H 1.09002 * 115.55186 * 29.41289 * 21 20 10 41 41 H 1.09002 * 117.49531 * 0.02562 * 22 21 20 42 42 H 1.09001 * 117.49924 * 145.01829 * 22 21 20 43 43 H 1.09004 * 117.49730 * 214.98042 * 23 21 20 44 44 H 1.09000 * 117.50154 * 359.97438 * 23 21 20 45 45 H 1.07997 * 125.58692 * 179.73255 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1889 6 7 4.3591 0.0457 1.6596 7 6 5.6568 -0.2315 1.5089 8 6 6.7305 0.6560 1.9867 9 8 7.8911 0.2989 1.9167 10 7 6.4271 1.8641 2.5014 11 6 5.0260 2.2598 2.6648 12 6 4.4912 1.6933 3.9547 13 1 5.1309 1.0984 4.5896 14 6 3.1853 1.9354 4.3249 15 7 2.4063 2.6603 3.5521 16 14 2.5220 1.2326 5.9235 17 1 2.7525 2.2028 7.0241 18 1 1.0656 0.9774 5.7856 19 1 3.2208 -0.0409 6.2320 20 6 7.4984 2.7816 2.8976 21 6 7.9512 2.4523 4.3215 22 6 7.7355 3.5198 5.3961 23 6 9.1464 3.2272 4.8797 24 6 5.8928 -1.4006 0.8720 25 16 4.3960 -2.1309 0.4870 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 3.1300 1.4426 0.0005 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1369 35 1 4.4404 1.8765 1.8292 36 1 4.9561 3.3473 2.6889 37 1 1.4877 2.8309 3.8127 38 1 8.3406 2.6733 2.2143 39 1 7.1305 3.8069 2.8614 40 1 7.8439 1.4093 4.6196 41 1 7.2707 4.4566 5.0886 42 1 7.4868 3.1792 6.4012 43 1 9.8254 2.6942 5.5453 44 1 9.6105 3.9714 4.2324 45 1 6.8673 -1.8076 0.6459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171545312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:27 Heat of formation + Delta-G solvation = 33.205189 kcal Electronic energy + Delta-G solvation = -26340.953624 eV Core-core repulsion = 22872.344697 eV Total energy + Delta-G solvation = -3468.608927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.01466 -38.28866 -36.76331 -35.82276 -34.56291 -32.27293 -30.60416 -27.99090 -27.27282 -26.66987 -26.46841 -23.93041 -22.72447 -21.92544 -20.84400 -20.11762 -19.63990 -18.64648 -17.47121 -16.45657 -15.82995 -15.40571 -15.22309 -14.82971 -14.49190 -14.34033 -14.19786 -13.72673 -13.47809 -13.40119 -12.81196 -12.62049 -12.17397 -12.00340 -11.88361 -11.77688 -11.60856 -11.48944 -11.27395 -11.22614 -11.10384 -10.87541 -10.79728 -10.56743 -10.47097 -10.29685 -10.22177 -9.86760 -9.54360 -9.38301 -9.30487 -9.05211 -8.64148 -8.39090 -8.15769 -7.57690 -5.93678 -3.91118 1.04569 1.74554 2.11714 2.73337 3.29942 3.37087 3.42258 3.89780 4.12163 4.34962 4.48661 4.59996 5.17008 5.19947 5.24710 5.28603 5.37609 5.42324 5.45559 5.57242 5.68698 5.75720 5.85242 5.90664 5.93479 5.96917 6.01906 6.14359 6.21541 6.26514 6.31596 6.33866 6.41393 6.44635 6.51719 6.57837 6.71440 6.73390 6.94529 7.11947 7.56803 7.84447 7.97773 8.20415 8.37124 8.40244 8.95803 9.10479 9.67983 11.14117 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.006041 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.136016 B = 4634.048638 C = 6141.074508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.145 4.145 4 C -0.038 4.038 5 C 0.036 3.964 6 N -0.362 5.362 7 C 0.030 3.970 8 C 0.587 3.413 9 O -0.570 6.570 10 N -0.575 5.575 11 C 0.226 3.774 12 C -0.490 4.490 13 H 0.048 0.952 14 C 0.072 3.928 15 N -0.887 5.887 16 Si 0.877 3.123 17 H -0.284 1.284 18 H -0.287 1.287 19 H -0.279 1.279 20 C 0.154 3.846 21 C -0.144 4.144 22 C -0.169 4.169 23 C -0.188 4.188 24 C -0.239 4.239 25 S 0.133 5.867 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.022 0.978 37 H 0.257 0.743 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -4.506 -6.578 7.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.079 4.079 5 C -0.245 4.245 6 N -0.075 5.075 7 C -0.106 4.106 8 C 0.373 3.627 9 O -0.452 6.452 10 N -0.303 5.303 11 C 0.107 3.893 12 C -0.530 4.530 13 H 0.066 0.934 14 C -0.129 4.129 15 N -0.527 5.527 16 Si 0.705 3.295 17 H -0.211 1.211 18 H -0.213 1.213 19 H -0.204 1.204 20 C 0.030 3.970 21 C -0.163 4.163 22 C -0.206 4.206 23 C -0.226 4.226 24 C -0.381 4.381 25 S 0.390 5.610 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.100 -5.010 -6.843 8.482 hybrid contribution 0.255 0.141 1.604 1.630 sum 0.354 -4.869 -5.239 7.161 Atomic orbital electron populations 1.21812 0.95085 1.01123 1.02129 1.21045 0.95403 0.97678 0.96253 1.21852 1.01690 0.94513 1.02176 1.20355 0.85019 1.01250 1.01242 1.27438 1.01861 0.93436 1.01740 1.67725 0.99828 1.25687 1.14289 1.20580 0.91489 0.95603 1.02897 1.17127 0.86208 0.81425 0.77986 1.90705 1.19700 1.74931 1.59873 1.48189 1.10080 1.14280 1.57778 1.20120 0.74046 0.95315 0.99828 1.21174 0.96063 1.31337 1.04404 0.93381 1.24653 0.96606 0.95455 0.96151 1.69904 1.06882 1.39189 1.36739 0.86851 0.78092 0.79516 0.84993 1.21063 1.21330 1.20426 1.20901 0.90250 0.92902 0.92959 1.22590 1.00854 0.97674 0.95180 1.22922 0.98054 1.00543 0.99073 1.22930 0.91421 1.03938 1.04269 1.26358 1.04156 1.00237 1.07323 1.82519 0.96383 1.26570 1.55497 0.92102 0.92800 0.93193 0.92072 0.94264 0.89948 0.92493 0.90793 0.87563 0.89721 0.95992 0.93341 0.91117 0.90623 0.88084 0.88854 0.89385 0.89491 0.89243 0.80423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 2 C -0.08 -1.17 2.91 -90.61 -0.26 -1.43 16 3 C -0.15 -2.40 8.99 37.16 0.33 -2.07 16 4 C -0.04 -0.58 5.27 -27.88 -0.15 -0.73 16 5 C 0.04 0.62 5.84 -13.61 -0.08 0.54 16 6 N -0.36 -7.48 5.13 -8.51 -0.04 -7.52 16 7 C 0.03 0.61 6.49 -84.53 -0.55 0.06 16 8 C 0.59 13.11 7.54 -12.59 -0.09 13.02 16 9 O -0.57 -13.30 16.43 5.25 0.09 -13.21 16 10 N -0.58 -12.62 2.49 -176.38 -0.44 -13.06 16 11 C 0.23 5.42 4.81 -5.19 -0.02 5.39 16 12 C -0.49 -12.68 8.23 -34.44 -0.28 -12.96 16 13 H 0.05 1.33 7.81 -52.49 -0.41 0.92 16 14 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 15 N -0.89 -23.07 13.29 55.43 0.74 -22.33 16 16 Si 0.88 20.81 29.54 -169.99 -5.02 15.78 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.15 2.93 5.65 -4.04 -0.02 2.90 16 21 C -0.14 -2.64 5.98 -90.62 -0.54 -3.19 16 22 C -0.17 -2.79 10.18 -26.70 -0.27 -3.06 16 23 C -0.19 -2.79 10.25 -26.70 -0.27 -3.07 16 24 C -0.24 -4.12 10.62 29.65 0.31 -3.80 16 25 S 0.13 1.91 22.92 -107.50 -2.46 -0.56 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.06 1.06 6.39 -51.92 -0.33 0.73 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 35 H 0.09 2.09 4.82 -51.93 -0.25 1.84 16 36 H 0.02 0.56 7.77 -51.93 -0.40 0.16 16 37 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 38 H 0.07 1.30 7.63 -51.93 -0.40 0.91 16 39 H 0.08 1.35 7.52 -51.93 -0.39 0.96 16 40 H 0.10 2.12 8.14 -51.93 -0.42 1.69 16 41 H 0.09 1.50 8.03 -51.93 -0.42 1.09 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.18 2.80 8.04 -52.49 -0.42 2.38 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -28.25 382.54 -10.27 -38.52 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.23 Total: 4.61 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.66 Total: -8.00 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.25 Total: -42.92 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.46 Total: -0.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.25 -10.27 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171545312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.726 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds