Wall clock time and date at job start Tue Mar 31 2020 13:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46828 * 2 1 4 4 C 1.53006 * 109.47222 * 119.99892 * 2 1 3 5 5 C 1.50699 * 109.46868 * 175.00022 * 4 2 1 6 6 N 1.28649 * 124.71905 * 90.00348 * 5 4 2 7 7 C 1.33557 * 115.76516 * 179.97438 * 6 5 4 8 8 C 1.47270 * 123.14099 * 180.02562 * 7 6 5 9 9 O 1.21632 * 120.00199 * 174.06477 * 8 7 6 10 10 N 1.34775 * 119.99743 * 354.05746 * 8 7 6 11 11 C 1.46500 * 120.00172 * 3.90520 * 10 8 7 12 12 C 1.50700 * 109.47053 * 83.19016 * 11 10 8 13 13 H 1.07995 * 120.00467 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99734 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00486 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.47144 * 89.99942 * 16 14 12 18 18 H 1.48501 * 109.47611 * 210.00066 * 16 14 12 19 19 H 1.48506 * 109.47004 * 330.00590 * 16 14 12 20 20 C 1.46507 * 119.99849 * 183.90312 * 10 8 7 21 21 C 1.53001 * 109.46945 * 274.97186 * 20 10 8 22 22 C 1.52999 * 117.49933 * 243.74589 * 21 20 10 23 23 C 1.52998 * 117.49785 * 175.08998 * 21 20 10 24 24 C 1.35207 * 113.71932 * 0.26515 * 7 6 5 25 25 S 1.70769 * 124.72022 * 269.95792 * 5 4 2 26 26 H 1.09004 * 109.46981 * 299.99662 * 1 2 3 27 27 H 1.09001 * 109.47129 * 59.99781 * 1 2 3 28 28 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47395 * 240.00053 * 2 1 3 30 30 H 1.08996 * 109.47262 * 299.99585 * 3 2 1 31 31 H 1.09004 * 109.47064 * 60.00388 * 3 2 1 32 32 H 1.09010 * 109.46860 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46942 * 55.00106 * 4 2 1 34 34 H 1.08997 * 109.46646 * 295.00333 * 4 2 1 35 35 H 1.08997 * 109.47043 * 323.19232 * 11 10 8 36 36 H 1.08998 * 109.47032 * 203.18699 * 11 10 8 37 37 H 0.96998 * 120.00408 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.47056 * 34.97245 * 20 10 8 39 39 H 1.08998 * 109.46884 * 154.97683 * 20 10 8 40 40 H 1.09002 * 115.55186 * 29.41289 * 21 20 10 41 41 H 1.09002 * 117.49531 * 0.02562 * 22 21 20 42 42 H 1.09001 * 117.49924 * 145.01829 * 22 21 20 43 43 H 1.09004 * 117.49730 * 214.98042 * 23 21 20 44 44 H 1.09000 * 117.50154 * 359.97438 * 23 21 20 45 45 H 1.07997 * 125.58692 * 179.73255 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1889 6 7 4.3591 0.0457 1.6596 7 6 5.6568 -0.2315 1.5089 8 6 6.7305 0.6560 1.9867 9 8 7.8911 0.2989 1.9167 10 7 6.4271 1.8641 2.5014 11 6 5.0260 2.2598 2.6648 12 6 4.4912 1.6933 3.9547 13 1 5.1309 1.0984 4.5896 14 6 3.1853 1.9354 4.3249 15 7 2.4063 2.6603 3.5521 16 14 2.5220 1.2326 5.9235 17 1 2.7525 2.2028 7.0241 18 1 1.0656 0.9774 5.7856 19 1 3.2208 -0.0409 6.2320 20 6 7.4984 2.7816 2.8976 21 6 7.9512 2.4523 4.3215 22 6 7.7355 3.5198 5.3961 23 6 9.1464 3.2272 4.8797 24 6 5.8928 -1.4006 0.8720 25 16 4.3960 -2.1309 0.4870 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 3.1300 1.4426 0.0005 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1369 35 1 4.4404 1.8765 1.8292 36 1 4.9561 3.3473 2.6889 37 1 1.4877 2.8309 3.8127 38 1 8.3406 2.6733 2.2143 39 1 7.1305 3.8069 2.8614 40 1 7.8439 1.4093 4.6196 41 1 7.2707 4.4566 5.0886 42 1 7.4868 3.1792 6.4012 43 1 9.8254 2.6942 5.5453 44 1 9.6105 3.9714 4.2324 45 1 6.8673 -1.8076 0.6459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171545312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:27 Heat of formation + Delta-G solvation = 20.055307 kcal Electronic energy + Delta-G solvation = -26341.523845 eV Core-core repulsion = 22872.344697 eV Total energy + Delta-G solvation = -3469.179148 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54322 -39.80413 -38.21355 -37.04079 -36.29846 -34.23852 -31.93379 -29.70515 -28.60568 -28.20415 -27.82414 -25.47808 -24.53052 -23.20514 -22.26566 -21.54667 -20.88804 -20.11516 -18.99554 -18.41534 -17.50320 -16.92658 -16.60563 -16.40228 -16.12210 -15.88041 -15.61897 -14.98935 -14.84626 -14.68244 -14.37363 -14.21398 -13.88734 -13.66055 -13.36176 -13.10600 -12.98688 -12.90774 -12.78983 -12.69865 -12.57817 -12.52070 -12.34524 -12.12060 -11.82800 -11.66880 -11.52951 -11.47297 -11.33652 -10.98376 -10.78100 -10.48057 -10.32463 -9.92397 -9.67827 -9.30196 -7.95107 -5.97468 -0.33390 0.46952 0.76368 1.21185 1.37073 1.41016 1.47950 2.30920 2.51074 2.54958 2.98774 3.23035 3.36594 3.78052 3.91020 4.01322 4.06878 4.13036 4.13854 4.19087 4.36140 4.41637 4.45282 4.67638 4.72965 4.74005 4.78117 4.87021 4.92410 4.96421 5.01637 5.07113 5.12350 5.20283 5.23983 5.26222 5.28501 5.36650 5.55359 5.61935 5.74072 5.95857 6.02795 6.37330 6.57206 6.82512 7.06209 7.31511 7.63324 9.11211 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.006041 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.136016 B = 4634.048638 C = 6141.074508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.036 4.036 5 C 0.008 3.992 6 N -0.402 5.402 7 C -0.012 4.012 8 C 0.579 3.421 9 O -0.590 6.590 10 N -0.582 5.582 11 C 0.245 3.755 12 C -0.491 4.491 13 H 0.022 0.978 14 C 0.044 3.956 15 N -0.898 5.898 16 Si 0.922 3.078 17 H -0.284 1.284 18 H -0.277 1.277 19 H -0.289 1.289 20 C 0.152 3.848 21 C -0.172 4.172 22 C -0.171 4.171 23 C -0.153 4.153 24 C -0.242 4.242 25 S 0.254 5.746 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.083 0.917 36 H -0.001 1.001 37 H 0.258 0.742 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.363 -6.126 -7.624 9.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.194 4.194 4 C -0.077 4.077 5 C -0.271 4.271 6 N -0.116 5.116 7 C -0.147 4.147 8 C 0.366 3.634 9 O -0.474 6.474 10 N -0.309 5.309 11 C 0.125 3.875 12 C -0.530 4.530 13 H 0.041 0.959 14 C -0.156 4.156 15 N -0.538 5.538 16 Si 0.750 3.250 17 H -0.211 1.211 18 H -0.203 1.203 19 H -0.215 1.215 20 C 0.029 3.971 21 C -0.191 4.191 22 C -0.208 4.208 23 C -0.190 4.190 24 C -0.385 4.385 25 S 0.512 5.488 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.017 0.983 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.130 0.870 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.486 -6.626 -7.889 10.313 hybrid contribution 0.441 0.542 1.863 1.990 sum -0.045 -6.083 -6.026 8.563 Atomic orbital electron populations 1.21773 0.93274 1.02656 1.01935 1.21035 0.96806 0.95578 0.96304 1.21734 0.99906 0.96632 1.01169 1.20433 0.84183 1.02707 1.00405 1.27772 1.02682 0.94705 1.01948 1.67612 1.00132 1.27892 1.15945 1.20468 0.91432 0.97013 1.05824 1.17510 0.86701 0.81596 0.77598 1.90657 1.20491 1.75340 1.60907 1.48200 1.09849 1.14903 1.57960 1.19761 0.75295 0.93412 0.99043 1.21045 0.95981 1.31232 1.04733 0.95932 1.25058 0.96696 0.95748 0.98059 1.69970 1.06931 1.39468 1.37410 0.86154 0.77918 0.78368 0.82534 1.21060 1.20258 1.21508 1.21030 0.89709 0.92788 0.93599 1.22409 1.04966 0.96511 0.95251 1.22964 0.99862 0.99748 0.98275 1.23040 0.90362 1.02521 1.03076 1.26749 1.06817 0.99396 1.05516 1.81975 0.92354 1.22364 1.52058 0.93805 0.91537 0.90769 0.89904 0.92646 0.93425 0.95055 0.87403 0.91251 0.90025 0.98288 0.93238 0.90655 0.89890 0.91389 0.88520 0.89553 0.87948 0.86959 0.79163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.19 71.98 0.66 -2.33 16 2 C -0.08 -2.02 2.91 -10.79 -0.03 -2.05 16 3 C -0.14 -4.58 8.99 71.98 0.65 -3.93 16 4 C -0.04 -1.08 5.27 29.85 0.16 -0.92 16 5 C 0.01 0.29 5.84 88.57 0.52 0.80 16 6 N -0.40 -16.95 5.13 -180.83 -0.93 -17.88 16 7 C -0.01 -0.50 6.49 40.56 0.26 -0.23 16 8 C 0.58 26.90 7.54 86.62 0.65 27.56 16 9 O -0.59 -28.38 16.43 -4.13 -0.07 -28.45 16 10 N -0.58 -26.82 2.49 -830.20 -2.06 -28.88 16 11 C 0.24 12.37 4.81 85.63 0.41 12.79 16 12 C -0.49 -26.49 8.23 25.60 0.21 -26.28 16 13 H 0.02 1.31 7.81 -2.91 -0.02 1.29 16 14 C 0.04 2.36 5.46 84.65 0.46 2.82 16 15 N -0.90 -48.04 13.29 21.45 0.28 -47.76 16 16 Si 0.92 43.49 29.54 68.60 2.03 45.51 16 17 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 20 C 0.15 5.99 5.65 86.38 0.49 6.48 16 21 C -0.17 -6.52 5.98 -10.79 -0.06 -6.58 16 22 C -0.17 -5.68 10.18 30.62 0.31 -5.37 16 23 C -0.15 -4.34 10.25 30.62 0.31 -4.03 16 24 C -0.24 -8.07 10.62 67.12 0.71 -7.36 16 25 S 0.25 6.51 22.92 -56.49 -1.29 5.21 16 26 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.03 1.18 6.39 -2.38 -0.02 1.17 16 33 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.08 4.26 4.82 -2.39 -0.01 4.25 16 36 H 0.00 -0.05 7.77 -2.39 -0.02 -0.06 16 37 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 38 H 0.08 2.85 7.63 -2.39 -0.02 2.83 16 39 H 0.08 3.07 7.52 -2.39 -0.02 3.05 16 40 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.10 3.11 8.03 -2.39 -0.02 3.09 16 42 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 44 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 45 H 0.19 5.71 8.04 -2.91 -0.02 5.69 16 Total: -1.00 -64.57 382.54 4.64 -59.93 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.97 Total: 20.95 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.72 Total: -8.64 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -2.71 Total: -94.52 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.07 Total: -28.45 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 6.51 SS G_CDS: -1.29 Total: 5.21 kcal Total: -64.57 4.64 -59.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171545312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.982 kcal (2) G-P(sol) polarization free energy of solvation -64.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds