Wall clock time and date at job start Tue Mar 31 2020 13:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53002 * 109.47225 * 2 1 4 4 C 1.50703 * 109.46950 * 180.02562 * 3 2 1 5 5 N 1.29375 * 124.70376 * 90.03089 * 4 3 2 6 6 C 1.30940 * 117.46922 * 180.02562 * 5 4 3 7 7 C 1.50704 * 123.04234 * 179.97438 * 6 5 4 8 8 C 1.36783 * 113.92221 * 359.97438 * 6 5 4 9 9 C 1.46557 * 126.18297 * 180.02562 * 8 6 5 10 10 O 1.21729 * 119.99778 * 352.06166 * 9 8 6 11 11 N 1.34775 * 120.00071 * 172.05314 * 9 8 6 12 12 C 1.36895 * 120.00115 * 1.44664 * 11 9 8 13 13 H 1.07998 * 119.99172 * 112.72647 * 12 11 9 14 14 C 1.38996 * 120.00320 * 292.73124 * 12 11 9 15 15 N 1.31396 * 120.00305 * 174.88812 * 14 12 11 16 16 Si 1.86807 * 120.00348 * 354.88835 * 14 12 11 17 17 H 1.48492 * 109.47188 * 95.11687 * 16 14 12 18 18 H 1.48497 * 109.47111 * 215.12173 * 16 14 12 19 19 H 1.48503 * 109.46469 * 335.12251 * 16 14 12 20 20 C 1.46502 * 120.00140 * 181.45458 * 11 9 8 21 21 C 1.54263 * 110.03218 * 237.90989 * 20 11 9 22 22 C 1.54970 * 104.16107 * 217.13477 * 21 20 11 23 23 C 1.54889 * 102.77676 * 37.88524 * 22 21 20 24 24 C 1.53872 * 110.03659 * 120.68991 * 20 11 9 25 25 S 1.70928 * 124.70044 * 269.72179 * 4 3 2 26 26 H 1.09000 * 109.47339 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47117 * 299.99928 * 1 2 3 28 28 H 1.09000 * 109.47252 * 59.99934 * 1 2 3 29 29 H 1.09000 * 109.47252 * 120.00065 * 2 1 3 30 30 H 1.09008 * 109.47131 * 239.99913 * 2 1 3 31 31 H 1.08998 * 109.47468 * 299.99848 * 3 2 1 32 32 H 1.08998 * 109.47014 * 60.00009 * 3 2 1 33 33 H 1.08997 * 109.47332 * 90.01875 * 7 6 5 34 34 H 1.09000 * 109.46777 * 210.01838 * 7 6 5 35 35 H 1.08999 * 109.46743 * 330.01441 * 7 6 5 36 36 H 0.96997 * 120.00408 * 184.98758 * 15 14 12 37 37 H 1.09001 * 110.01381 * 359.29684 * 20 11 9 38 38 H 1.09006 * 110.48654 * 335.77999 * 21 20 11 39 39 H 1.08993 * 110.49178 * 98.42346 * 21 20 11 40 40 H 1.09002 * 110.71664 * 279.57186 * 22 21 20 41 41 H 1.09002 * 110.91988 * 156.29400 * 22 21 20 42 42 H 1.08994 * 110.48648 * 203.41122 * 23 22 21 43 43 H 1.09001 * 110.60153 * 80.81491 * 23 22 21 44 44 H 1.09004 * 110.03131 * 238.56885 * 24 20 11 45 45 H 1.08998 * 110.03073 * 359.94733 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2831 1.4431 -1.0645 6 6 5.5821 1.4424 -0.9002 7 6 6.5559 1.4426 -2.0504 8 6 5.9755 1.4416 0.4099 9 6 7.3572 1.4412 0.8984 10 8 8.2790 1.2961 0.1167 11 7 7.6072 1.6018 2.2130 12 6 6.5696 1.7355 3.0958 13 1 6.3775 0.9618 3.8244 14 6 5.7632 2.8669 3.0543 15 7 4.7078 2.9504 3.8326 16 14 6.1797 4.2688 1.8921 17 1 5.4110 4.1117 0.6314 18 1 5.8257 5.5623 2.5299 19 1 7.6338 4.2467 1.5912 20 6 8.9896 1.6333 2.6972 21 6 9.2076 0.5231 3.7458 22 6 10.1587 1.1662 4.7867 23 6 9.6474 2.6263 4.8617 24 6 9.2694 2.9700 3.4061 25 16 4.5206 1.4490 1.4042 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 6.7915 2.4702 -2.3270 34 1 7.4695 0.9278 -1.7529 35 1 6.1111 0.9296 -2.9030 36 1 4.1049 3.7061 3.7529 37 1 9.6798 1.5008 1.8641 38 1 8.2617 0.2480 4.2124 39 1 9.6755 -0.3481 3.2875 40 1 11.1906 1.1357 4.4368 41 1 10.0659 0.6742 5.7549 42 1 10.4363 3.2889 5.2175 43 1 8.7730 2.6937 5.5089 44 1 10.0961 3.4858 2.9175 45 1 8.3771 3.5957 3.3890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172455964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:17 Heat of formation + Delta-G solvation = -10.418215 kcal Electronic energy + Delta-G solvation = -26460.284665 eV Core-core repulsion = 22989.784086 eV Total energy + Delta-G solvation = -3470.500579 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.59358 -38.70658 -36.81699 -34.85181 -34.46455 -32.22583 -30.95012 -28.29056 -28.16216 -27.67805 -26.48912 -24.84733 -22.71901 -21.31983 -20.87181 -20.31064 -19.32112 -18.52500 -17.19363 -16.77909 -15.82717 -15.61491 -14.77964 -14.66794 -14.56537 -14.36793 -14.08373 -13.86271 -13.39567 -13.15856 -12.88472 -12.77913 -12.69567 -12.14633 -11.99019 -11.97602 -11.77863 -11.45544 -11.30047 -11.23375 -11.13798 -10.92812 -10.85167 -10.63168 -10.57612 -10.52714 -10.39091 -10.17620 -10.02929 -9.78682 -9.62460 -8.87614 -8.35723 -8.09807 -7.56345 -7.50396 -6.74546 -4.74164 1.24860 2.48489 2.92586 2.97478 3.10396 3.17131 3.38418 3.88539 4.12912 4.28340 4.51376 4.75976 5.17354 5.17996 5.22157 5.22582 5.35341 5.44059 5.74646 5.81743 5.87117 5.93869 5.94959 5.95555 6.00631 6.10902 6.12070 6.14879 6.17141 6.21060 6.26277 6.32526 6.35734 6.39485 6.44083 6.54066 6.55557 6.62460 6.81124 6.87762 6.94756 7.14802 7.39014 7.68100 8.12523 8.61523 8.63578 8.99387 9.46871 10.23160 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.005266 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.685690 B = 5316.154255 C = 5813.605043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.036 4.036 4 C -0.069 4.069 5 N -0.499 5.499 6 C 0.114 3.886 7 C -0.081 4.081 8 C -0.312 4.312 9 C 0.573 3.427 10 O -0.576 6.576 11 N -0.473 5.473 12 C -0.322 4.322 13 H 0.109 0.891 14 C 0.088 3.912 15 N -0.839 5.839 16 Si 0.840 3.160 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.247 1.247 20 C 0.136 3.864 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.130 4.130 25 S 0.346 5.654 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.284 0.716 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 -2.051 -0.133 2.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.076 4.076 4 C -0.339 4.339 5 N -0.215 5.215 6 C -0.028 4.028 7 C -0.140 4.140 8 C -0.437 4.437 9 C 0.364 3.636 10 O -0.460 6.460 11 N -0.195 5.195 12 C -0.459 4.459 13 H 0.127 0.873 14 C -0.127 4.127 15 N -0.472 5.472 16 Si 0.663 3.337 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.171 1.171 20 C 0.032 3.968 21 C -0.164 4.164 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.169 4.169 25 S 0.618 5.382 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.644 -1.994 0.155 2.589 hybrid contribution 0.578 1.016 -1.229 1.696 sum -1.066 -0.979 -1.074 1.802 Atomic orbital electron populations 1.21759 0.95615 1.01515 1.01787 1.21497 0.95505 0.95914 1.02625 1.20096 0.86875 0.97754 1.02923 1.28648 1.02306 1.03150 0.99751 1.65974 1.04127 1.17969 1.33472 1.20619 0.90173 0.98847 0.93141 1.20472 0.97483 1.02261 0.93735 1.25750 1.00030 1.20476 0.97491 1.17375 0.86015 0.77122 0.83134 1.90599 1.45122 1.54343 1.55953 1.43560 1.05341 1.65892 1.04708 1.19071 1.05756 1.05122 1.15969 0.87337 1.25672 0.95768 0.96677 0.94600 1.69588 1.11541 1.31510 1.34548 0.87302 0.81982 0.82656 0.81716 1.18585 1.19965 1.17077 1.21674 0.84928 0.94005 0.96143 1.22640 1.00178 0.97293 0.96333 1.22419 0.98464 0.96173 0.98705 1.22259 1.00231 0.95792 0.97108 1.22474 1.01183 0.98015 0.95195 1.86380 0.91862 1.59113 1.00847 0.92750 0.92567 0.92807 0.91650 0.91706 0.90507 0.90384 0.91872 0.88516 0.92034 0.90540 0.89732 0.89991 0.92522 0.92264 0.92077 0.92772 0.91127 0.92821 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.15 0.37 -1.26 16 2 C -0.12 -1.61 5.92 -26.74 -0.16 -1.76 16 3 C -0.04 -0.58 5.79 -27.88 -0.16 -0.74 16 4 C -0.07 -1.39 6.63 -13.31 -0.09 -1.48 16 5 N -0.50 -10.97 10.49 -7.46 -0.08 -11.05 16 6 C 0.11 2.58 6.83 -83.50 -0.57 2.01 16 7 C -0.08 -1.60 9.82 36.01 0.35 -1.25 16 8 C -0.31 -7.37 4.46 -36.76 -0.16 -7.53 16 9 C 0.57 13.92 6.17 -12.91 -0.08 13.84 16 10 O -0.58 -14.44 13.67 5.16 0.07 -14.37 16 11 N -0.47 -10.81 1.69 -108.06 -0.18 -10.99 16 12 C -0.32 -7.52 6.12 -15.01 -0.09 -7.61 16 13 H 0.11 2.66 7.25 -52.49 -0.38 2.28 16 14 C 0.09 2.08 2.75 -17.46 -0.05 2.03 16 15 N -0.84 -19.98 13.13 55.50 0.73 -19.25 16 16 Si 0.84 19.81 22.48 -169.99 -3.82 15.99 16 17 H -0.26 -6.48 6.87 56.52 0.39 -6.09 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.25 -5.98 6.36 56.52 0.36 -5.62 16 20 C 0.14 2.74 3.29 -66.81 -0.22 2.52 16 21 C -0.13 -2.18 6.42 -25.03 -0.16 -2.34 16 22 C -0.12 -1.74 6.91 -24.69 -0.17 -1.91 16 23 C -0.12 -1.83 6.83 -25.07 -0.17 -2.00 16 24 C -0.13 -2.45 6.05 -25.61 -0.16 -2.60 16 25 S 0.35 7.56 15.46 -107.50 -1.66 5.90 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.10 2.00 5.91 -51.93 -0.31 1.69 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.28 6.44 8.32 -40.82 -0.34 6.10 16 37 H 0.08 1.76 6.94 -51.93 -0.36 1.40 16 38 H 0.08 1.53 6.56 -51.93 -0.34 1.19 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 1.60 4.42 -51.93 -0.23 1.37 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -26.68 352.68 -8.30 -34.98 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.15 Total: 3.56 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.52 Total: -10.09 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.47 Total: -41.29 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.07 Total: -14.37 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -3.82 Total: 15.99 kcal Atomic # 16 Polarization: 7.56 SS G_CDS: -1.66 Total: 5.90 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -26.68 -8.30 -34.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172455964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.564 kcal (2) G-P(sol) polarization free energy of solvation -26.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds