Wall clock time and date at job start Tue Mar 31 2020 13:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53002 * 109.47225 * 2 1 4 4 C 1.50703 * 109.46950 * 180.02562 * 3 2 1 5 5 N 1.29375 * 124.70376 * 90.03089 * 4 3 2 6 6 C 1.30940 * 117.46922 * 180.02562 * 5 4 3 7 7 C 1.50704 * 123.04234 * 179.97438 * 6 5 4 8 8 C 1.36783 * 113.92221 * 359.97438 * 6 5 4 9 9 C 1.46557 * 126.18297 * 180.02562 * 8 6 5 10 10 O 1.21729 * 119.99778 * 352.06166 * 9 8 6 11 11 N 1.34775 * 120.00071 * 172.05314 * 9 8 6 12 12 C 1.36895 * 120.00115 * 1.44664 * 11 9 8 13 13 H 1.07998 * 119.99172 * 112.72647 * 12 11 9 14 14 C 1.38996 * 120.00320 * 292.73124 * 12 11 9 15 15 N 1.31396 * 120.00305 * 174.88812 * 14 12 11 16 16 Si 1.86807 * 120.00348 * 354.88835 * 14 12 11 17 17 H 1.48492 * 109.47188 * 95.11687 * 16 14 12 18 18 H 1.48497 * 109.47111 * 215.12173 * 16 14 12 19 19 H 1.48503 * 109.46469 * 335.12251 * 16 14 12 20 20 C 1.46502 * 120.00140 * 181.45458 * 11 9 8 21 21 C 1.54263 * 110.03218 * 237.90989 * 20 11 9 22 22 C 1.54970 * 104.16107 * 217.13477 * 21 20 11 23 23 C 1.54889 * 102.77676 * 37.88524 * 22 21 20 24 24 C 1.53872 * 110.03659 * 120.68991 * 20 11 9 25 25 S 1.70928 * 124.70044 * 269.72179 * 4 3 2 26 26 H 1.09000 * 109.47339 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47117 * 299.99928 * 1 2 3 28 28 H 1.09000 * 109.47252 * 59.99934 * 1 2 3 29 29 H 1.09000 * 109.47252 * 120.00065 * 2 1 3 30 30 H 1.09008 * 109.47131 * 239.99913 * 2 1 3 31 31 H 1.08998 * 109.47468 * 299.99848 * 3 2 1 32 32 H 1.08998 * 109.47014 * 60.00009 * 3 2 1 33 33 H 1.08997 * 109.47332 * 90.01875 * 7 6 5 34 34 H 1.09000 * 109.46777 * 210.01838 * 7 6 5 35 35 H 1.08999 * 109.46743 * 330.01441 * 7 6 5 36 36 H 0.96997 * 120.00408 * 184.98758 * 15 14 12 37 37 H 1.09001 * 110.01381 * 359.29684 * 20 11 9 38 38 H 1.09006 * 110.48654 * 335.77999 * 21 20 11 39 39 H 1.08993 * 110.49178 * 98.42346 * 21 20 11 40 40 H 1.09002 * 110.71664 * 279.57186 * 22 21 20 41 41 H 1.09002 * 110.91988 * 156.29400 * 22 21 20 42 42 H 1.08994 * 110.48648 * 203.41122 * 23 22 21 43 43 H 1.09001 * 110.60153 * 80.81491 * 23 22 21 44 44 H 1.09004 * 110.03131 * 238.56885 * 24 20 11 45 45 H 1.08998 * 110.03073 * 359.94733 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2831 1.4431 -1.0645 6 6 5.5821 1.4424 -0.9002 7 6 6.5559 1.4426 -2.0504 8 6 5.9755 1.4416 0.4099 9 6 7.3572 1.4412 0.8984 10 8 8.2790 1.2961 0.1167 11 7 7.6072 1.6018 2.2130 12 6 6.5696 1.7355 3.0958 13 1 6.3775 0.9618 3.8244 14 6 5.7632 2.8669 3.0543 15 7 4.7078 2.9504 3.8326 16 14 6.1797 4.2688 1.8921 17 1 5.4110 4.1117 0.6314 18 1 5.8257 5.5623 2.5299 19 1 7.6338 4.2467 1.5912 20 6 8.9896 1.6333 2.6972 21 6 9.2076 0.5231 3.7458 22 6 10.1587 1.1662 4.7867 23 6 9.6474 2.6263 4.8617 24 6 9.2694 2.9700 3.4061 25 16 4.5206 1.4490 1.4042 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 6.7915 2.4702 -2.3270 34 1 7.4695 0.9278 -1.7529 35 1 6.1111 0.9296 -2.9030 36 1 4.1049 3.7061 3.7529 37 1 9.6798 1.5008 1.8641 38 1 8.2617 0.2480 4.2124 39 1 9.6755 -0.3481 3.2875 40 1 11.1906 1.1357 4.4368 41 1 10.0659 0.6742 5.7549 42 1 10.4363 3.2889 5.2175 43 1 8.7730 2.6937 5.5089 44 1 10.0961 3.4858 2.9175 45 1 8.3771 3.5957 3.3890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172455964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:17 Heat of formation + Delta-G solvation = -24.137162 kcal Electronic energy + Delta-G solvation = -26460.879563 eV Core-core repulsion = 22989.784086 eV Total energy + Delta-G solvation = -3471.095477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34049 -40.37764 -38.40512 -36.25044 -36.05671 -34.02449 -32.48975 -29.88310 -29.55020 -28.96717 -28.12957 -26.62227 -24.10528 -23.01087 -22.16120 -21.67741 -20.94655 -20.21846 -18.92197 -18.52515 -17.54035 -17.24495 -16.40766 -16.18901 -15.94240 -15.88360 -15.70891 -15.56279 -14.88681 -14.72296 -14.48004 -14.22803 -14.17517 -13.78636 -13.61976 -13.46945 -13.21699 -12.98187 -12.85315 -12.78241 -12.48166 -12.43499 -12.20730 -12.13304 -12.03953 -11.84425 -11.74887 -11.64157 -11.46361 -11.37474 -11.31887 -10.70631 -10.12260 -9.85644 -9.35394 -9.22654 -8.62241 -6.60155 -0.48199 0.75304 1.05753 1.15768 1.21814 1.26130 1.64029 1.98722 2.30277 2.56248 2.65187 3.24138 3.79560 3.85991 3.97778 4.10508 4.11936 4.13125 4.15736 4.31328 4.56354 4.59060 4.65725 4.67727 4.68037 4.71481 4.72435 4.76585 4.91317 4.93965 4.95575 4.97038 5.01979 5.14836 5.18859 5.23355 5.26504 5.38776 5.40767 5.43134 5.50276 5.57863 5.59032 5.88941 6.25234 6.75378 6.90476 7.15883 7.64357 8.38719 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.005266 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.685690 B = 5316.154255 C = 5813.605043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.039 4.039 4 C -0.051 4.051 5 N -0.512 5.512 6 C 0.107 3.893 7 C -0.076 4.076 8 C -0.344 4.344 9 C 0.562 3.438 10 O -0.595 6.595 11 N -0.474 5.474 12 C -0.316 4.316 13 H 0.096 0.904 14 C 0.085 3.915 15 N -0.850 5.850 16 Si 0.863 3.137 17 H -0.280 1.280 18 H -0.266 1.266 19 H -0.261 1.261 20 C 0.125 3.875 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.110 4.110 24 C -0.133 4.133 25 S 0.329 5.671 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.289 0.711 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 -2.231 0.329 2.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.079 4.079 4 C -0.322 4.322 5 N -0.229 5.229 6 C -0.035 4.035 7 C -0.135 4.135 8 C -0.469 4.469 9 C 0.352 3.648 10 O -0.481 6.481 11 N -0.195 5.195 12 C -0.452 4.452 13 H 0.114 0.886 14 C -0.129 4.129 15 N -0.484 5.484 16 Si 0.688 3.312 17 H -0.206 1.206 18 H -0.191 1.191 19 H -0.186 1.186 20 C 0.022 3.978 21 C -0.161 4.161 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.171 4.171 25 S 0.601 5.399 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.124 -2.164 0.660 3.103 hybrid contribution 0.668 1.046 -1.466 1.920 sum -1.456 -1.118 -0.806 2.004 Atomic orbital electron populations 1.21722 0.92968 1.02746 1.02644 1.21471 0.97718 0.93962 1.01956 1.20360 0.83750 0.99673 1.04164 1.29278 1.04179 1.00330 0.98393 1.66086 1.03893 1.19120 1.33776 1.21125 0.90989 0.97739 0.93672 1.20472 0.96629 1.02719 0.93676 1.25817 1.00254 1.22564 0.98251 1.17632 0.86307 0.77229 0.83608 1.90564 1.45688 1.55494 1.56367 1.43691 1.06387 1.65196 1.04249 1.18824 1.06293 1.04636 1.15425 0.88612 1.25664 0.95793 0.96787 0.94627 1.69569 1.11802 1.32023 1.35012 0.87009 0.80592 0.82937 0.80678 1.20605 1.19069 1.18573 1.21942 0.83140 0.96102 0.96619 1.22596 1.00329 0.96851 0.96278 1.22400 0.98587 0.94806 0.98740 1.22230 1.00666 0.97310 0.94572 1.22492 1.00405 0.96795 0.97447 1.86229 0.91867 1.60049 1.01799 0.91391 0.91752 0.91931 0.92211 0.92568 0.89337 0.88977 0.91346 0.89574 0.89714 0.90002 0.90908 0.91680 0.91685 0.90199 0.90022 0.90009 0.92378 0.91766 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.11 -2.88 5.92 30.59 0.18 -2.70 16 3 C -0.04 -1.18 5.79 29.85 0.17 -1.01 16 4 C -0.05 -2.04 6.63 88.47 0.59 -1.45 16 5 N -0.51 -22.22 10.49 -177.52 -1.86 -24.09 16 6 C 0.11 4.85 6.83 42.35 0.29 5.14 16 7 C -0.08 -3.02 9.82 71.24 0.70 -2.32 16 8 C -0.34 -16.50 4.46 24.10 0.11 -16.40 16 9 C 0.56 27.94 6.17 86.41 0.53 28.47 16 10 O -0.59 -30.63 13.67 -4.44 -0.06 -30.69 16 11 N -0.47 -22.10 1.69 -613.98 -1.04 -23.14 16 12 C -0.32 -14.98 6.12 84.08 0.51 -14.46 16 13 H 0.10 4.80 7.25 -2.91 -0.02 4.78 16 14 C 0.09 4.06 2.75 84.94 0.23 4.30 16 15 N -0.85 -40.38 13.13 21.67 0.28 -40.10 16 16 Si 0.86 41.02 22.48 68.60 1.54 42.56 16 17 H -0.28 -14.10 6.87 99.48 0.68 -13.42 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.26 -12.93 6.36 99.48 0.63 -12.30 16 20 C 0.13 5.06 3.29 45.71 0.15 5.21 16 21 C -0.12 -4.13 6.42 31.70 0.20 -3.93 16 22 C -0.11 -2.85 6.91 31.91 0.22 -2.63 16 23 C -0.11 -3.26 6.83 31.67 0.22 -3.04 16 24 C -0.13 -4.94 6.05 31.32 0.19 -4.75 16 25 S 0.33 14.46 15.46 -56.49 -0.87 13.59 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.09 3.61 5.91 -2.39 -0.01 3.59 16 35 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.29 12.97 8.32 -92.71 -0.77 12.20 16 37 H 0.07 3.08 6.94 -2.39 -0.02 3.07 16 38 H 0.06 2.42 6.56 -2.38 -0.02 2.40 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 45 H 0.05 2.09 4.42 -2.39 -0.01 2.08 16 Total: -1.00 -57.75 352.68 3.89 -53.86 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.88 Total: 19.57 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 5.01 Total: -11.57 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.61 Total: -87.32 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.06 Total: -30.69 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.54 Total: 42.56 kcal Atomic # 16 Polarization: 14.46 SS G_CDS: -0.87 Total: 13.59 kcal Total: -57.75 3.89 -53.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172455964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.727 kcal (2) G-P(sol) polarization free energy of solvation -57.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds