Wall clock time and date at job start Tue Mar 31 2020 14:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47447 * 2 1 4 4 C 1.53000 * 109.47199 * 120.00291 * 2 1 3 5 5 C 1.50698 * 109.47323 * 64.99725 * 4 2 1 6 6 O 1.21283 * 120.00012 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00032 * 180.27674 * 5 4 2 8 8 C 1.39554 * 119.99856 * 175.85221 * 7 5 4 9 9 C 1.39085 * 119.92701 * 31.28026 * 8 7 5 10 10 C 1.37681 * 120.10735 * 179.72479 * 9 8 7 11 11 C 1.39805 * 119.95944 * 0.54415 * 10 9 8 12 12 C 1.47485 * 120.07316 * 179.75161 * 11 10 9 13 13 O 1.21626 * 120.00045 * 221.79167 * 12 11 10 14 14 N 1.34774 * 120.00103 * 41.78944 * 12 11 10 15 15 C 1.46499 * 119.99812 * 356.15779 * 14 12 11 16 16 C 1.36897 * 120.00338 * 176.16096 * 14 12 11 17 17 H 1.07999 * 119.99433 * 336.08173 * 16 14 12 18 18 C 1.39025 * 120.00504 * 156.07849 * 16 14 12 19 19 N 1.31383 * 119.99649 * 354.26275 * 18 16 14 20 20 Si 1.86799 * 120.00278 * 174.26047 * 18 16 14 21 21 H 1.48501 * 109.46841 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46978 * 120.00228 * 20 18 16 23 23 H 1.48500 * 109.46935 * 240.00254 * 20 18 16 24 24 C 1.39811 * 119.86018 * 359.72872 * 11 10 9 25 25 C 1.37864 * 119.88850 * 359.97438 * 24 11 10 26 26 F 1.35095 * 119.97885 * 179.97438 * 25 24 11 27 27 H 1.09006 * 109.46628 * 300.00463 * 1 2 3 28 28 H 1.09000 * 109.47245 * 59.99768 * 1 2 3 29 29 H 1.08991 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46539 * 240.00083 * 2 1 3 31 31 H 1.08999 * 109.47570 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47257 * 299.99800 * 3 2 1 33 33 H 1.08998 * 109.47407 * 59.99822 * 3 2 1 34 34 H 1.08994 * 109.46730 * 304.99484 * 4 2 1 35 35 H 1.08998 * 109.47102 * 184.99943 * 4 2 1 36 36 H 0.96996 * 120.00007 * 355.85363 * 7 5 4 37 37 H 1.07998 * 119.94607 * 359.97438 * 9 8 7 38 38 H 1.07996 * 120.02083 * 180.27534 * 10 9 8 39 39 H 1.09000 * 109.47366 * 25.39929 * 15 14 12 40 40 H 1.09000 * 109.47140 * 145.39985 * 15 14 12 41 41 H 1.09000 * 109.47297 * 265.39808 * 15 14 12 42 42 H 0.96997 * 119.99894 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.05899 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 8 1.0109 -2.5902 0.2403 7 7 1.9801 -3.0074 2.1918 8 6 1.5374 -4.3308 2.1784 9 6 1.3439 -4.9855 0.9666 10 6 0.9127 -6.2929 0.9491 11 6 0.6579 -6.9602 2.1510 12 6 0.1906 -8.3590 2.1350 13 8 -0.6889 -8.7150 2.8959 14 7 0.7382 -9.2426 1.2773 15 6 1.7373 -8.7955 0.3036 16 6 0.3608 -10.5580 1.3158 17 1 -0.0494 -10.9756 2.2234 18 6 0.5055 -11.3562 0.1868 19 7 0.8977 -10.8235 -0.9483 20 14 0.1424 -13.1860 0.2837 21 1 -0.2799 -13.5343 1.6641 22 1 -0.9465 -13.5255 -0.6671 23 1 1.3644 -13.9525 -0.0690 24 6 0.8474 -6.2988 3.3681 25 6 1.2853 -4.9916 3.3787 26 9 1.4685 -4.3506 4.5537 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8901 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6055 -0.2618 2.1369 35 1 3.1263 -0.6444 1.2951 36 1 2.5315 -2.6879 2.9230 37 1 1.5362 -4.4688 0.0380 38 1 0.7672 -6.8014 0.0075 39 1 2.2357 -7.9017 0.6787 40 1 2.4734 -9.5846 0.1499 41 1 1.2461 -8.5676 -0.6424 42 1 0.9991 -11.3804 -1.7360 43 1 0.6519 -6.8113 4.2984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173355224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:12 Heat of formation + Delta-G solvation = -81.975663 kcal Electronic energy + Delta-G solvation = -26897.234244 eV Core-core repulsion = 22857.417525 eV Total energy + Delta-G solvation = -4039.816719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.79978 -40.71412 -39.24526 -37.55166 -35.90211 -34.84193 -34.70125 -31.80269 -30.51102 -30.06408 -28.12401 -27.35168 -26.32964 -24.93158 -23.34169 -22.47334 -21.16063 -20.13103 -19.64501 -18.06541 -17.31332 -17.19375 -16.83252 -16.21065 -15.61058 -15.60343 -15.36263 -15.05293 -14.71503 -14.36031 -14.15413 -14.00950 -13.89057 -13.66992 -13.24537 -12.87176 -12.60690 -12.58187 -12.34362 -12.17097 -12.11946 -11.73701 -11.49785 -11.38471 -11.24081 -11.15544 -11.12022 -10.98000 -10.90125 -10.50477 -10.35187 -10.16086 -9.75392 -9.09917 -8.63010 -8.54278 -7.93164 -7.77330 -6.39346 -3.95774 1.07940 1.45925 2.37836 2.81160 3.11600 3.22098 3.28970 3.55435 4.02803 4.17447 4.30689 4.33381 4.45769 4.58510 4.75691 4.91424 5.05387 5.13495 5.14560 5.21021 5.31447 5.38088 5.41926 5.53172 5.55890 5.59228 5.62192 5.69940 5.85912 6.06704 6.11662 6.19833 6.26988 6.31870 6.37671 6.50015 6.72883 6.85673 7.08144 7.15375 7.20875 7.47492 7.91580 8.04750 8.40281 9.09683 9.30872 9.88851 10.62269 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.002758 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.833249 B =10150.112244 C =11006.315995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.081 4.081 3 C -0.148 4.148 4 C -0.135 4.135 5 C 0.511 3.489 6 O -0.511 6.511 7 N -0.668 5.668 8 C 0.110 3.890 9 C -0.106 4.106 10 C -0.087 4.087 11 C -0.076 4.076 12 C 0.473 3.527 13 O -0.586 6.586 14 N -0.429 5.429 15 C 0.102 3.898 16 C -0.301 4.301 17 H 0.102 0.898 18 C 0.031 3.969 19 N -0.878 5.878 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.096 4.096 25 C 0.060 3.940 26 F -0.143 7.143 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.411 0.589 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.269 0.731 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.156 20.962 1.809 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.100 4.100 3 C -0.205 4.205 4 C -0.175 4.175 5 C 0.300 3.700 6 O -0.386 6.386 7 N -0.313 5.313 8 C 0.014 3.986 9 C -0.126 4.126 10 C -0.106 4.106 11 C -0.081 4.081 12 C 0.262 3.738 13 O -0.472 6.472 14 N -0.145 5.145 15 C -0.041 4.041 16 C -0.429 4.429 17 H 0.119 0.881 18 C -0.173 4.173 19 N -0.517 5.517 20 Si 0.758 3.242 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.117 4.117 25 C 0.038 3.962 26 F -0.121 7.121 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.247 0.753 37 H 0.171 0.829 38 H 0.163 0.837 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.336 20.470 1.301 21.468 hybrid contribution 0.264 -0.584 0.516 0.823 sum 6.600 19.886 1.817 21.032 Atomic orbital electron populations 1.21983 0.94549 1.03626 1.01147 1.20882 0.96809 0.95378 0.96967 1.21859 1.00852 0.95715 1.02088 1.21799 1.03128 0.91078 1.01517 1.20935 0.78890 0.88344 0.81858 1.90680 1.38297 1.77321 1.32295 1.43315 1.52514 1.08993 1.26486 1.17739 1.03151 0.84604 0.93076 1.21193 1.00557 0.93808 0.97025 1.21682 0.96613 0.93565 0.98754 1.20172 0.99079 0.96306 0.92518 1.17785 0.85541 0.83944 0.86520 1.90637 1.33073 1.78878 1.44582 1.43527 1.33771 1.07675 1.29532 1.21926 0.92154 0.97770 0.92243 1.19764 1.40543 0.83887 0.98714 0.88070 1.25452 0.96486 1.00998 0.94359 1.69977 1.45218 1.36147 1.00338 0.85767 0.78067 0.81547 0.78807 1.19087 1.20540 1.20578 1.20977 0.99112 0.91972 0.99605 1.17217 1.07083 0.92267 0.79607 1.91439 1.93581 1.81651 1.45475 0.93352 0.92787 0.90567 0.90166 0.92649 0.92274 0.92633 0.88532 0.88546 0.75325 0.82927 0.83741 0.94548 0.91314 0.91643 0.92027 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.93 37.16 0.33 -1.07 16 2 C -0.08 -0.63 2.57 -90.62 -0.23 -0.86 16 3 C -0.15 -0.84 9.19 37.15 0.34 -0.50 16 4 C -0.14 -0.93 5.18 -27.88 -0.14 -1.07 16 5 C 0.51 5.55 7.40 -10.99 -0.08 5.47 16 6 O -0.51 -7.30 11.17 5.56 0.06 -7.23 16 7 N -0.67 -7.29 5.24 -9.80 -0.05 -7.34 16 8 C 0.11 1.60 6.37 -83.63 -0.53 1.06 16 9 C -0.11 -1.67 8.69 -39.47 -0.34 -2.01 16 10 C -0.09 -1.55 7.43 -39.20 -0.29 -1.84 16 11 C -0.08 -1.55 5.15 -104.96 -0.54 -2.09 16 12 C 0.47 11.92 7.26 -12.49 -0.09 11.83 16 13 O -0.59 -16.75 16.68 5.25 0.09 -16.67 16 14 N -0.43 -11.04 3.01 -123.40 -0.37 -11.41 16 15 C 0.10 2.27 7.15 59.85 0.43 2.70 16 16 C -0.30 -8.32 9.25 -15.00 -0.14 -8.46 16 17 H 0.10 2.91 7.45 -52.49 -0.39 2.52 16 18 C 0.03 0.80 5.24 -17.45 -0.09 0.71 16 19 N -0.88 -22.82 10.39 55.50 0.58 -22.25 16 20 Si 0.93 20.48 29.56 -169.99 -5.02 15.46 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 C -0.10 -1.74 9.62 -39.13 -0.38 -2.12 16 25 C 0.06 0.93 7.30 -39.32 -0.29 0.64 16 26 F -0.14 -2.03 16.89 2.25 0.04 -1.99 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.90 5.95 -51.93 -0.31 0.59 16 30 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.41 3.24 8.57 -40.82 -0.35 2.89 16 37 H 0.15 2.34 5.93 -52.49 -0.31 2.03 16 38 H 0.14 2.60 5.86 -52.49 -0.31 2.29 16 39 H 0.04 0.69 5.28 -51.93 -0.27 0.42 16 40 H 0.07 1.59 7.16 -51.93 -0.37 1.22 16 41 H 0.07 1.49 6.70 -51.93 -0.35 1.14 16 42 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 43 H 0.14 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -31.95 355.21 -6.97 -38.93 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.59 Total: 4.77 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.05 Total: 2.39 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.15 Total: -41.00 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.15 Total: -23.90 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.95 -6.97 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173355224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.049 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds