Wall clock time and date at job start Tue Mar 31 2020 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47447 * 2 1 4 4 C 1.53000 * 109.47199 * 120.00291 * 2 1 3 5 5 C 1.50698 * 109.47323 * 64.99725 * 4 2 1 6 6 O 1.21283 * 120.00012 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00032 * 180.27674 * 5 4 2 8 8 C 1.39554 * 119.99856 * 175.85221 * 7 5 4 9 9 C 1.39085 * 119.92701 * 31.28026 * 8 7 5 10 10 C 1.37681 * 120.10735 * 179.72479 * 9 8 7 11 11 C 1.39805 * 119.95944 * 0.54415 * 10 9 8 12 12 C 1.47485 * 120.07316 * 179.75161 * 11 10 9 13 13 O 1.21626 * 120.00045 * 221.79167 * 12 11 10 14 14 N 1.34774 * 120.00103 * 41.78944 * 12 11 10 15 15 C 1.46499 * 119.99812 * 356.15779 * 14 12 11 16 16 C 1.36897 * 120.00338 * 176.16096 * 14 12 11 17 17 H 1.07999 * 119.99433 * 336.08173 * 16 14 12 18 18 C 1.39025 * 120.00504 * 156.07849 * 16 14 12 19 19 N 1.31383 * 119.99649 * 354.26275 * 18 16 14 20 20 Si 1.86799 * 120.00278 * 174.26047 * 18 16 14 21 21 H 1.48501 * 109.46841 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46978 * 120.00228 * 20 18 16 23 23 H 1.48500 * 109.46935 * 240.00254 * 20 18 16 24 24 C 1.39811 * 119.86018 * 359.72872 * 11 10 9 25 25 C 1.37864 * 119.88850 * 359.97438 * 24 11 10 26 26 F 1.35095 * 119.97885 * 179.97438 * 25 24 11 27 27 H 1.09006 * 109.46628 * 300.00463 * 1 2 3 28 28 H 1.09000 * 109.47245 * 59.99768 * 1 2 3 29 29 H 1.08991 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46539 * 240.00083 * 2 1 3 31 31 H 1.08999 * 109.47570 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47257 * 299.99800 * 3 2 1 33 33 H 1.08998 * 109.47407 * 59.99822 * 3 2 1 34 34 H 1.08994 * 109.46730 * 304.99484 * 4 2 1 35 35 H 1.08998 * 109.47102 * 184.99943 * 4 2 1 36 36 H 0.96996 * 120.00007 * 355.85363 * 7 5 4 37 37 H 1.07998 * 119.94607 * 359.97438 * 9 8 7 38 38 H 1.07996 * 120.02083 * 180.27534 * 10 9 8 39 39 H 1.09000 * 109.47366 * 25.39929 * 15 14 12 40 40 H 1.09000 * 109.47140 * 145.39985 * 15 14 12 41 41 H 1.09000 * 109.47297 * 265.39808 * 15 14 12 42 42 H 0.96997 * 119.99894 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.05899 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 8 1.0109 -2.5902 0.2403 7 7 1.9801 -3.0074 2.1918 8 6 1.5374 -4.3308 2.1784 9 6 1.3439 -4.9855 0.9666 10 6 0.9127 -6.2929 0.9491 11 6 0.6579 -6.9602 2.1510 12 6 0.1906 -8.3590 2.1350 13 8 -0.6889 -8.7150 2.8959 14 7 0.7382 -9.2426 1.2773 15 6 1.7373 -8.7955 0.3036 16 6 0.3608 -10.5580 1.3158 17 1 -0.0494 -10.9756 2.2234 18 6 0.5055 -11.3562 0.1868 19 7 0.8977 -10.8235 -0.9483 20 14 0.1424 -13.1860 0.2837 21 1 -0.2799 -13.5343 1.6641 22 1 -0.9465 -13.5255 -0.6671 23 1 1.3644 -13.9525 -0.0690 24 6 0.8474 -6.2988 3.3681 25 6 1.2853 -4.9916 3.3787 26 9 1.4685 -4.3506 4.5537 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8901 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6055 -0.2618 2.1369 35 1 3.1263 -0.6444 1.2951 36 1 2.5315 -2.6879 2.9230 37 1 1.5362 -4.4688 0.0380 38 1 0.7672 -6.8014 0.0075 39 1 2.2357 -7.9017 0.6787 40 1 2.4734 -9.5846 0.1499 41 1 1.2461 -8.5676 -0.6424 42 1 0.9991 -11.3804 -1.7360 43 1 0.6519 -6.8113 4.2984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173355224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:11 Heat of formation + Delta-G solvation = -101.495453 kcal Electronic energy + Delta-G solvation = -26898.080686 eV Core-core repulsion = 22857.417525 eV Total energy + Delta-G solvation = -4040.663161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.02901 -41.78046 -40.84622 -39.01523 -36.81508 -36.65123 -35.84991 -33.75776 -31.85595 -31.37224 -29.05258 -28.15619 -27.92068 -26.71674 -24.75849 -23.83793 -22.16719 -21.31986 -20.80850 -19.22565 -19.02403 -18.64681 -18.17795 -17.39433 -17.20504 -16.73177 -16.53452 -16.43043 -16.00744 -15.91244 -15.76631 -15.17530 -14.95984 -14.74385 -14.67515 -14.23450 -13.97791 -13.73442 -13.52163 -13.29280 -13.09320 -13.03233 -12.97365 -12.83293 -12.73392 -12.56346 -12.41375 -12.11615 -12.02186 -11.74089 -11.56604 -11.48708 -11.06074 -10.80066 -10.51601 -9.96949 -9.78887 -9.22038 -8.38296 -6.05723 -0.29431 0.08394 1.34028 1.40471 1.47468 1.54890 1.83384 1.97069 2.22683 2.55190 2.83536 3.07699 3.11928 3.56392 3.71655 3.81120 3.87447 4.04509 4.05139 4.14568 4.32669 4.42032 4.55433 4.70601 4.73902 4.74487 4.78523 4.88119 4.94488 4.96654 5.01061 5.08296 5.12467 5.20406 5.30415 5.34761 5.34985 5.38878 5.50835 5.54803 5.77251 6.02417 6.29295 6.40347 7.05125 7.07251 7.33344 7.90593 8.61995 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.002758 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.833249 B =10150.112244 C =11006.315995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.126 4.126 5 C 0.509 3.491 6 O -0.546 6.546 7 N -0.659 5.659 8 C 0.134 3.866 9 C -0.102 4.102 10 C -0.082 4.082 11 C -0.104 4.104 12 C 0.467 3.533 13 O -0.633 6.633 14 N -0.443 5.443 15 C 0.116 3.884 16 C -0.344 4.344 17 H 0.075 0.925 18 C -0.001 4.001 19 N -0.890 5.890 20 Si 0.996 3.004 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.263 1.263 24 C -0.098 4.098 25 C 0.069 3.931 26 F -0.130 7.130 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.430 0.570 37 H 0.163 0.837 38 H 0.139 0.861 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.277 0.723 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 23.595 1.834 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.166 4.166 5 C 0.300 3.700 6 O -0.423 6.423 7 N -0.305 5.305 8 C 0.037 3.963 9 C -0.122 4.122 10 C -0.101 4.101 11 C -0.108 4.108 12 C 0.257 3.743 13 O -0.523 6.523 14 N -0.159 5.159 15 C -0.026 4.026 16 C -0.472 4.472 17 H 0.093 0.907 18 C -0.203 4.203 19 N -0.528 5.528 20 Si 0.819 3.181 21 H -0.198 1.198 22 H -0.199 1.199 23 H -0.187 1.187 24 C -0.119 4.119 25 C 0.048 3.952 26 F -0.108 7.108 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.269 0.731 37 H 0.180 0.820 38 H 0.157 0.843 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.096 23.159 1.318 24.569 hybrid contribution -0.268 -1.202 0.503 1.330 sum 7.828 21.957 1.821 23.382 Atomic orbital electron populations 1.21965 0.95906 1.01706 1.01752 1.20879 0.95658 0.96776 0.96816 1.21810 1.01631 0.94013 1.02517 1.21885 1.05206 0.87527 1.01944 1.21787 0.77724 0.89747 0.80779 1.90684 1.39755 1.78140 1.33716 1.43409 1.52376 1.07290 1.27415 1.17762 1.00476 0.86002 0.92047 1.21235 1.00210 0.92783 0.97983 1.21572 0.96578 0.94407 0.97553 1.19732 1.02719 0.93996 0.94364 1.18525 0.84719 0.85716 0.85335 1.90574 1.35108 1.80378 1.46212 1.43750 1.34446 1.07389 1.30291 1.21843 0.91066 0.98334 0.91360 1.19721 1.43215 0.85450 0.98792 0.90704 1.26220 0.95544 1.04930 0.93633 1.70040 1.44520 1.37627 1.00629 0.84835 0.78504 0.76399 0.78353 1.19797 1.19873 1.18738 1.20923 0.99273 0.93067 0.98598 1.16966 1.06541 0.91324 0.80418 1.91476 1.93383 1.81133 1.44823 0.92237 0.92795 0.93613 0.91866 0.91348 0.92552 0.91580 0.86123 0.85327 0.73111 0.82006 0.84291 0.91499 0.92668 0.92397 0.91306 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.93 71.98 0.64 -1.93 16 2 C -0.08 -1.04 2.57 -10.80 -0.03 -1.07 16 3 C -0.14 -1.14 9.19 71.98 0.66 -0.47 16 4 C -0.13 -1.21 5.18 29.85 0.15 -1.06 16 5 C 0.51 9.50 7.40 87.66 0.65 10.15 16 6 O -0.55 -14.70 11.17 -3.04 -0.03 -14.73 16 7 N -0.66 -12.04 5.24 -303.30 -1.59 -13.63 16 8 C 0.13 3.59 6.37 38.38 0.24 3.83 16 9 C -0.10 -3.07 8.69 22.34 0.19 -2.88 16 10 C -0.08 -2.91 7.43 22.52 0.17 -2.75 16 11 C -0.10 -4.31 5.15 -20.08 -0.10 -4.42 16 12 C 0.47 24.68 7.26 86.68 0.63 25.31 16 13 O -0.63 -38.42 16.68 -4.11 -0.07 -38.48 16 14 N -0.44 -23.84 3.01 -662.59 -2.00 -25.83 16 15 C 0.12 5.30 7.15 127.77 0.91 6.21 16 16 C -0.34 -19.92 9.25 84.09 0.78 -19.14 16 17 H 0.08 4.61 7.45 -2.91 -0.02 4.59 16 18 C 0.00 -0.03 5.24 84.95 0.44 0.41 16 19 N -0.89 -46.74 10.39 21.68 0.23 -46.51 16 20 Si 1.00 42.52 29.56 68.60 2.03 44.55 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C -0.10 -3.56 9.62 22.56 0.22 -3.34 16 25 C 0.07 2.03 7.30 22.44 0.16 2.20 16 26 F -0.13 -3.33 16.89 44.97 0.76 -2.58 16 27 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 1.04 5.95 -2.39 -0.01 1.03 16 30 H 0.06 1.03 7.96 -2.38 -0.02 1.01 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.12 0.68 8.14 -2.39 -0.02 0.67 16 35 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.43 4.84 8.57 -92.71 -0.79 4.05 16 37 H 0.16 4.70 5.93 -2.91 -0.02 4.68 16 38 H 0.14 5.08 5.86 -2.91 -0.02 5.07 16 39 H 0.07 2.58 5.28 -2.39 -0.01 2.57 16 40 H 0.05 2.62 7.16 -2.39 -0.02 2.60 16 41 H 0.06 2.69 6.70 -2.39 -0.02 2.68 16 42 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 43 H 0.14 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -73.01 355.21 5.32 -67.70 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.26 Total: 18.47 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 5.73 Total: 11.05 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -3.36 Total: -85.98 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.10 Total: -53.21 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.76 Total: -2.58 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.01 5.32 -67.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173355224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.799 kcal (2) G-P(sol) polarization free energy of solvation -73.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds