Wall clock time and date at job start Tue Mar 31 2020 12:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29029 * 124.91396 * 2 1 4 4 C 1.31783 * 117.12264 * 179.97438 * 3 2 1 5 5 C 1.50708 * 122.75036 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47076 * 305.02939 * 5 4 3 7 7 C 1.52996 * 109.47118 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47159 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50697 * 109.46949 * 90.00203 * 11 10 8 13 13 H 1.08004 * 120.00186 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00081 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47135 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47061 * 119.99902 * 16 14 12 19 19 H 1.48503 * 109.47075 * 240.00004 * 16 14 12 20 20 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 21 21 C 1.52998 * 109.47320 * 89.99349 * 20 10 8 22 22 C 1.52997 * 117.50231 * 243.62602 * 21 20 10 23 23 C 1.52998 * 117.50058 * 174.99994 * 21 20 10 24 24 C 1.33642 * 114.50147 * 0.23475 * 4 3 2 25 25 S 1.70983 * 124.91954 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.46987 * 89.99910 * 1 2 3 27 27 H 1.09007 * 109.46717 * 209.99945 * 1 2 3 28 28 H 1.08994 * 109.46861 * 329.99509 * 1 2 3 29 29 H 1.08998 * 109.47154 * 185.03140 * 5 4 3 30 30 H 1.09003 * 109.46515 * 65.02616 * 5 4 3 31 31 H 1.09004 * 109.47131 * 59.99662 * 6 5 4 32 32 H 1.09000 * 109.47504 * 299.99966 * 6 5 4 33 33 H 1.09004 * 109.47066 * 60.00025 * 7 6 5 34 34 H 1.08994 * 109.47405 * 299.99855 * 7 6 5 35 35 H 1.09001 * 109.47567 * 210.00057 * 11 10 8 36 36 H 1.09005 * 109.47076 * 330.00563 * 11 10 8 37 37 H 0.96991 * 119.99957 * 180.02562 * 15 14 12 38 38 H 1.08994 * 109.46996 * 209.99677 * 20 10 8 39 39 H 1.09001 * 109.46578 * 329.99540 * 20 10 8 40 40 H 1.09001 * 115.54721 * 29.33740 * 21 20 10 41 41 H 1.09000 * 117.49450 * 0.02562 * 22 21 20 42 42 H 1.08994 * 117.49954 * 145.01950 * 22 21 20 43 43 H 1.08996 * 117.50282 * 214.98430 * 23 21 20 44 44 H 1.09000 * 117.49560 * 0.02562 * 23 21 20 45 45 H 1.07997 * 126.03386 * 179.76342 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5308 2.0247 0.0000 6 6 4.2334 2.9496 -1.1819 7 6 5.2275 4.1126 -1.1820 8 6 4.9350 5.0233 -2.3466 9 8 4.0211 4.7676 -3.1018 10 7 5.6851 6.1252 -2.5453 11 6 5.3971 7.0138 -3.6739 12 6 4.4117 8.0695 -3.2431 13 1 4.0378 8.0780 -2.2299 14 6 3.9875 9.0246 -4.1425 15 7 4.4424 9.0140 -5.3765 16 14 2.7666 10.3337 -3.6084 17 1 2.4117 10.1268 -2.1813 18 1 3.3759 11.6773 -3.7777 19 1 1.5412 10.2372 -4.4417 20 6 6.7888 6.4344 -1.6328 21 6 8.0731 5.7795 -2.1453 22 6 8.7162 4.7037 -1.2680 23 6 9.3697 6.0816 -1.3914 24 6 3.9354 -0.4006 -0.0040 25 16 2.4857 -1.4020 -0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 5.5449 1.6353 -0.0895 30 1 4.4368 2.5834 0.9312 31 1 3.2192 3.3389 -1.0924 32 1 4.3272 2.3909 -2.1131 33 1 6.2418 3.7236 -1.2713 34 1 5.1333 4.6712 -0.2509 35 1 6.3193 7.4911 -4.0052 36 1 4.9731 6.4340 -4.4938 37 1 4.1442 9.6861 -6.0091 38 1 6.9268 7.5144 -1.5824 39 1 6.5569 6.0510 -0.6392 40 1 8.1372 5.6527 -3.2260 41 1 8.2242 4.4622 -0.3258 42 1 9.2035 3.8687 -1.7714 43 1 10.2868 6.1532 -1.9760 44 1 9.3077 6.7466 -0.5300 45 1 4.9545 -0.7579 -0.0080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176238277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:00 Heat of formation + Delta-G solvation = 15.304346 kcal Electronic energy + Delta-G solvation = -24389.033084 eV Core-core repulsion = 20919.647918 eV Total energy + Delta-G solvation = -3469.385165 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09184 -39.15131 -37.15612 -34.85784 -34.20445 -32.53865 -32.09111 -29.07126 -28.13731 -27.21654 -25.87522 -23.65883 -22.56619 -22.28469 -21.27524 -20.60741 -19.83319 -18.26849 -17.65729 -16.45480 -16.40437 -15.57300 -15.51844 -15.16189 -15.07427 -14.72801 -14.27886 -14.22858 -13.86502 -13.55567 -13.21829 -12.99067 -12.65970 -12.43939 -12.36142 -12.23988 -12.14066 -11.64293 -11.46322 -11.39624 -11.27889 -11.19994 -10.96499 -10.80737 -10.56413 -10.51232 -10.30085 -10.04563 -9.78596 -9.72591 -9.55134 -9.54776 -8.83979 -8.74003 -8.39473 -7.59884 -6.00123 -4.04318 0.56323 1.20453 1.57014 2.67702 3.32547 3.39962 3.43861 3.54603 3.84078 3.91515 4.08119 4.48726 4.74175 4.84819 4.93431 5.02931 5.05667 5.08189 5.11080 5.21907 5.28085 5.33734 5.35324 5.45742 5.52096 5.61994 5.67113 5.69401 5.76062 5.77405 5.87954 5.92238 6.01598 6.10673 6.14371 6.19355 6.39599 6.49737 6.63849 7.13761 7.50682 7.62451 7.65979 7.97188 8.29100 8.51206 8.96355 9.20128 9.60847 11.08016 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.003021 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.257284 B = 9265.120195 C =11317.307491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.054 3.946 3 N -0.464 5.464 4 C 0.082 3.918 5 C -0.045 4.045 6 C -0.094 4.094 7 C -0.141 4.141 8 C 0.506 3.494 9 O -0.541 6.541 10 N -0.597 5.597 11 C 0.246 3.754 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.143 3.857 21 C -0.164 4.164 22 C -0.185 4.185 23 C -0.177 4.177 24 C -0.264 4.264 25 S 0.096 5.904 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.251 -19.069 14.036 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.225 4.225 3 N -0.179 5.179 4 C -0.049 4.049 5 C -0.085 4.085 6 C -0.132 4.132 7 C -0.181 4.181 8 C 0.293 3.707 9 O -0.419 6.419 10 N -0.328 5.328 11 C 0.127 3.873 12 C -0.562 4.562 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C 0.019 3.981 21 C -0.183 4.183 22 C -0.222 4.222 23 C -0.215 4.215 24 C -0.403 4.403 25 S 0.350 5.650 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.267 -19.663 13.444 23.928 hybrid contribution 0.184 1.477 0.160 1.498 sum 2.452 -18.186 13.604 22.843 Atomic orbital electron populations 1.20465 0.85180 1.04138 1.04122 1.27092 1.01824 0.90694 1.02862 1.66093 1.04654 1.31353 1.15776 1.20349 0.90188 0.94269 1.00133 1.20288 0.95197 0.92670 1.00383 1.21215 1.00339 0.94660 0.97035 1.21739 1.00987 0.96946 0.98404 1.20358 0.82359 0.81635 0.86328 1.90669 1.30223 1.73318 1.47671 1.48192 1.30150 1.24370 1.30131 1.19255 0.96260 0.87986 0.83845 1.21488 1.25658 1.11479 0.97595 0.92449 1.24938 0.96509 0.97937 0.94782 1.69944 1.44254 1.35410 1.03865 0.86459 0.81129 0.81161 0.78779 1.19794 1.21012 1.20905 1.20992 0.84330 1.00662 0.92153 1.22944 0.94013 1.02380 0.98973 1.23041 1.04823 0.92621 1.01752 1.22893 0.96610 0.98886 1.03087 1.26786 1.02897 0.95652 1.14933 1.83870 0.98470 1.13358 1.69281 0.89393 0.90215 0.89110 0.90292 0.90090 0.90265 0.91530 0.89467 0.89725 0.95104 0.94000 0.92847 0.89648 0.91427 0.87480 0.88865 0.89256 0.89069 0.88780 0.80680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.46 36.01 0.38 -0.24 16 2 C 0.05 0.60 7.39 -13.46 -0.10 0.50 16 3 N -0.46 -6.42 10.34 -8.05 -0.08 -6.50 16 4 C 0.08 1.02 6.08 -84.22 -0.51 0.51 16 5 C -0.05 -0.52 5.71 -27.88 -0.16 -0.67 16 6 C -0.09 -1.41 4.40 -26.74 -0.12 -1.52 16 7 C -0.14 -2.10 4.25 -27.88 -0.12 -2.22 16 8 C 0.51 10.74 7.67 -10.98 -0.08 10.66 16 9 O -0.54 -14.10 15.56 5.55 0.09 -14.02 16 10 N -0.60 -12.75 2.46 -175.06 -0.43 -13.18 16 11 C 0.25 6.53 5.16 -5.20 -0.03 6.50 16 12 C -0.52 -15.10 9.39 -34.44 -0.32 -15.42 16 13 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 16 Si 0.90 22.26 29.54 -169.99 -5.02 17.23 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 C 0.14 2.33 5.50 -4.04 -0.02 2.31 16 21 C -0.16 -2.28 5.97 -90.62 -0.54 -2.82 16 22 C -0.19 -2.00 9.19 -26.73 -0.25 -2.24 16 23 C -0.18 -1.97 10.25 -26.73 -0.27 -2.25 16 24 C -0.26 -2.70 11.07 29.12 0.32 -2.38 16 25 S 0.10 0.89 23.18 -107.50 -2.49 -1.61 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.70 8.03 -51.93 -0.42 0.29 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 32 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.09 1.10 6.88 -51.93 -0.36 0.74 16 34 H 0.08 1.13 7.40 -51.93 -0.38 0.74 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 38 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 39 H 0.07 0.92 6.17 -51.93 -0.32 0.60 16 40 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 41 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -35.08 388.99 -10.56 -45.65 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.30 Total: 0.50 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.92 Total: -7.64 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.22 Total: -45.98 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.02 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.08 -10.56 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176238277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.950 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds