Wall clock time and date at job start Tue Mar 31 2020 12:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29029 * 124.91396 * 2 1 4 4 C 1.31783 * 117.12264 * 179.97438 * 3 2 1 5 5 C 1.50708 * 122.75036 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47076 * 305.02939 * 5 4 3 7 7 C 1.52996 * 109.47118 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47159 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50697 * 109.46949 * 90.00203 * 11 10 8 13 13 H 1.08004 * 120.00186 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00081 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47135 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47061 * 119.99902 * 16 14 12 19 19 H 1.48503 * 109.47075 * 240.00004 * 16 14 12 20 20 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 21 21 C 1.52998 * 109.47320 * 89.99349 * 20 10 8 22 22 C 1.52997 * 117.50231 * 243.62602 * 21 20 10 23 23 C 1.52998 * 117.50058 * 174.99994 * 21 20 10 24 24 C 1.33642 * 114.50147 * 0.23475 * 4 3 2 25 25 S 1.70983 * 124.91954 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.46987 * 89.99910 * 1 2 3 27 27 H 1.09007 * 109.46717 * 209.99945 * 1 2 3 28 28 H 1.08994 * 109.46861 * 329.99509 * 1 2 3 29 29 H 1.08998 * 109.47154 * 185.03140 * 5 4 3 30 30 H 1.09003 * 109.46515 * 65.02616 * 5 4 3 31 31 H 1.09004 * 109.47131 * 59.99662 * 6 5 4 32 32 H 1.09000 * 109.47504 * 299.99966 * 6 5 4 33 33 H 1.09004 * 109.47066 * 60.00025 * 7 6 5 34 34 H 1.08994 * 109.47405 * 299.99855 * 7 6 5 35 35 H 1.09001 * 109.47567 * 210.00057 * 11 10 8 36 36 H 1.09005 * 109.47076 * 330.00563 * 11 10 8 37 37 H 0.96991 * 119.99957 * 180.02562 * 15 14 12 38 38 H 1.08994 * 109.46996 * 209.99677 * 20 10 8 39 39 H 1.09001 * 109.46578 * 329.99540 * 20 10 8 40 40 H 1.09001 * 115.54721 * 29.33740 * 21 20 10 41 41 H 1.09000 * 117.49450 * 0.02562 * 22 21 20 42 42 H 1.08994 * 117.49954 * 145.01950 * 22 21 20 43 43 H 1.08996 * 117.50282 * 214.98430 * 23 21 20 44 44 H 1.09000 * 117.49560 * 0.02562 * 23 21 20 45 45 H 1.07997 * 126.03386 * 179.76342 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5308 2.0247 0.0000 6 6 4.2334 2.9496 -1.1819 7 6 5.2275 4.1126 -1.1820 8 6 4.9350 5.0233 -2.3466 9 8 4.0211 4.7676 -3.1018 10 7 5.6851 6.1252 -2.5453 11 6 5.3971 7.0138 -3.6739 12 6 4.4117 8.0695 -3.2431 13 1 4.0378 8.0780 -2.2299 14 6 3.9875 9.0246 -4.1425 15 7 4.4424 9.0140 -5.3765 16 14 2.7666 10.3337 -3.6084 17 1 2.4117 10.1268 -2.1813 18 1 3.3759 11.6773 -3.7777 19 1 1.5412 10.2372 -4.4417 20 6 6.7888 6.4344 -1.6328 21 6 8.0731 5.7795 -2.1453 22 6 8.7162 4.7037 -1.2680 23 6 9.3697 6.0816 -1.3914 24 6 3.9354 -0.4006 -0.0040 25 16 2.4857 -1.4020 -0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 5.5449 1.6353 -0.0895 30 1 4.4368 2.5834 0.9312 31 1 3.2192 3.3389 -1.0924 32 1 4.3272 2.3909 -2.1131 33 1 6.2418 3.7236 -1.2713 34 1 5.1333 4.6712 -0.2509 35 1 6.3193 7.4911 -4.0052 36 1 4.9731 6.4340 -4.4938 37 1 4.1442 9.6861 -6.0091 38 1 6.9268 7.5144 -1.5824 39 1 6.5569 6.0510 -0.6392 40 1 8.1372 5.6527 -3.2260 41 1 8.2242 4.4622 -0.3258 42 1 9.2035 3.8687 -1.7714 43 1 10.2868 6.1532 -1.9760 44 1 9.3077 6.7466 -0.5300 45 1 4.9545 -0.7579 -0.0080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176238277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:59 Heat of formation + Delta-G solvation = -6.066191 kcal Electronic energy + Delta-G solvation = -24389.959780 eV Core-core repulsion = 20919.647918 eV Total energy + Delta-G solvation = -3470.311861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02138 -40.66735 -38.34867 -36.28151 -35.62416 -34.58616 -33.05071 -30.38196 -29.42019 -28.42312 -27.42909 -25.24280 -23.79938 -23.14882 -22.51241 -21.77081 -20.63148 -19.83021 -18.65209 -18.53485 -17.82030 -17.17818 -16.78948 -16.38297 -16.04577 -15.95584 -15.80818 -15.38746 -14.77595 -14.68014 -14.39239 -14.28995 -13.99961 -13.76265 -13.62597 -13.46024 -13.10665 -13.01325 -12.90283 -12.76110 -12.58681 -12.55582 -12.32948 -12.23881 -12.21504 -12.00223 -11.71402 -11.62253 -11.21113 -10.86367 -10.66538 -10.54962 -10.46937 -10.33150 -9.57250 -9.42205 -8.23817 -6.38866 -0.20901 0.47627 0.80007 1.33962 1.36909 1.48855 1.82973 1.88310 2.29847 2.45148 3.01269 3.05267 3.21380 3.68821 3.87998 3.94310 4.04972 4.09348 4.16370 4.21293 4.35771 4.39213 4.48297 4.52399 4.62740 4.65188 4.68965 4.79804 4.80745 4.82782 4.88206 4.91302 5.02908 5.05806 5.11814 5.21851 5.27539 5.27886 5.36944 5.38045 5.46050 5.56885 5.86377 6.05771 6.69442 6.83132 6.88088 7.27584 7.52953 8.83556 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.003021 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.257284 B = 9265.120195 C =11317.307491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.031 3.969 3 N -0.510 5.510 4 C 0.050 3.950 5 C -0.035 4.035 6 C -0.084 4.084 7 C -0.121 4.121 8 C 0.493 3.507 9 O -0.604 6.604 10 N -0.601 5.601 11 C 0.263 3.737 12 C -0.541 4.541 13 H 0.053 0.947 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.969 3.031 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.282 1.282 20 C 0.142 3.858 21 C -0.195 4.195 22 C -0.161 4.161 23 C -0.164 4.164 24 C -0.262 4.262 25 S 0.142 5.858 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.019 0.981 36 H -0.008 1.008 37 H 0.267 0.733 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 -20.366 17.129 27.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.247 4.247 3 N -0.226 5.226 4 C -0.081 4.081 5 C -0.075 4.075 6 C -0.123 4.123 7 C -0.161 4.161 8 C 0.283 3.717 9 O -0.486 6.486 10 N -0.331 5.331 11 C 0.142 3.858 12 C -0.580 4.580 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.569 5.569 16 Si 0.793 3.207 17 H -0.191 1.191 18 H -0.192 1.192 19 H -0.208 1.208 20 C 0.020 3.980 21 C -0.215 4.215 22 C -0.197 4.197 23 C -0.201 4.201 24 C -0.401 4.401 25 S 0.397 5.603 26 H 0.109 0.891 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.037 0.963 36 H 0.010 0.990 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.127 0.873 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.675 -20.968 16.577 26.981 hybrid contribution -0.219 1.803 -0.861 2.010 sum 3.457 -19.164 15.716 25.024 Atomic orbital electron populations 1.20592 0.83654 1.05160 1.04595 1.27588 1.03178 0.91301 1.02610 1.66111 1.05841 1.33245 1.17411 1.20569 0.90089 0.95466 1.01965 1.20250 0.96755 0.91873 0.98605 1.21059 0.98255 0.95040 0.97963 1.21720 1.02664 0.95621 0.96049 1.21579 0.81075 0.81801 0.87283 1.90633 1.32947 1.74781 1.50249 1.48204 1.31695 1.23744 1.29460 1.18657 0.94903 0.87634 0.84650 1.21748 1.26403 1.12326 0.97527 0.92900 1.25896 0.98363 1.00325 0.94733 1.70067 1.45458 1.36412 1.05010 0.85351 0.78311 0.78565 0.78484 1.19066 1.19173 1.20783 1.21239 0.83710 1.00406 0.92662 1.22631 0.94474 1.06435 0.97941 1.23209 1.02840 0.92285 1.01403 1.23009 0.94909 0.99644 1.02575 1.27183 1.04658 0.95205 1.13037 1.83649 0.97192 1.11557 1.67936 0.89109 0.87527 0.89776 0.86893 0.89095 0.94146 0.93867 0.85921 0.86900 0.96305 0.99025 0.92420 0.91208 0.87805 0.90565 0.86333 0.88180 0.88453 0.87341 0.77914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.46 71.24 0.75 -0.47 16 2 C 0.03 0.67 7.39 88.52 0.65 1.32 16 3 N -0.51 -14.16 10.34 -179.39 -1.86 -16.01 16 4 C 0.05 1.19 6.08 41.53 0.25 1.44 16 5 C -0.04 -0.72 5.71 29.85 0.17 -0.55 16 6 C -0.08 -2.52 4.40 30.59 0.13 -2.38 16 7 C -0.12 -3.43 4.25 29.85 0.13 -3.30 16 8 C 0.49 21.60 7.67 87.66 0.67 22.27 16 9 O -0.60 -33.67 15.56 -3.04 -0.05 -33.72 16 10 N -0.60 -26.59 2.46 -826.15 -2.03 -28.62 16 11 C 0.26 14.92 5.16 85.63 0.44 15.36 16 12 C -0.54 -32.53 9.39 25.60 0.24 -32.29 16 13 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 14 C 0.01 0.33 5.46 84.66 0.46 0.79 16 15 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 16 Si 0.97 46.43 29.54 68.60 2.03 48.45 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 20 C 0.14 4.52 5.50 86.38 0.47 5.00 16 21 C -0.20 -5.21 5.97 -10.80 -0.06 -5.27 16 22 C -0.16 -2.81 9.19 30.59 0.28 -2.53 16 23 C -0.16 -3.16 10.25 30.59 0.31 -2.84 16 24 C -0.26 -4.72 11.07 66.78 0.74 -3.98 16 25 S 0.14 2.34 23.18 -56.49 -1.31 1.03 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.11 1.51 8.03 -2.39 -0.02 1.50 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.50 8.03 -2.38 -0.02 1.48 16 32 H 0.04 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.12 2.63 6.88 -2.38 -0.02 2.61 16 34 H 0.11 2.62 7.40 -2.39 -0.02 2.60 16 35 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 36 H -0.01 -0.55 7.42 -2.38 -0.02 -0.57 16 37 H 0.27 15.56 8.31 -92.72 -0.77 14.78 16 38 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 39 H 0.10 2.50 6.17 -2.39 -0.01 2.49 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 41 H 0.12 1.52 7.87 -2.39 -0.02 1.51 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.20 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -83.98 388.99 3.68 -80.30 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.97 Total: 13.86 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.65 Total: -7.44 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -3.60 Total: -102.48 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.05 Total: -33.72 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.31 Total: 1.03 kcal Total: -83.98 3.68 -80.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176238277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.235 kcal (2) G-P(sol) polarization free energy of solvation -83.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds