Wall clock time and date at job start Tue Mar 31 2020 13:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47412 * 2 1 4 4 C 1.52997 * 109.46879 * 239.99698 * 2 1 3 5 5 C 1.50701 * 109.46955 * 120.00135 * 2 1 3 6 6 C 1.33644 * 122.75047 * 4.96876 * 5 2 1 7 7 S 1.76196 * 107.92302 * 180.02562 * 6 5 2 8 8 C 1.70978 * 90.28543 * 0.02562 * 7 6 5 9 9 C 1.50696 * 124.91658 * 179.97438 * 8 7 6 10 10 C 1.53036 * 109.45879 * 300.02298 * 9 8 7 11 11 C 1.53198 * 109.31202 * 181.38618 * 10 9 8 12 12 N 1.46924 * 108.77218 * 305.36628 * 11 10 9 13 13 C 1.34787 * 120.62801 * 233.33090 * 12 11 10 14 14 O 1.21691 * 119.99640 * 174.75820 * 13 12 11 15 15 C 1.46370 * 119.99692 * 354.76262 * 13 12 11 16 16 H 1.07992 * 120.00386 * 4.99795 * 15 13 12 17 17 C 1.40057 * 119.99766 * 185.00657 * 15 13 12 18 18 N 1.30672 * 119.99737 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00194 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47220 * 89.99734 * 19 17 15 21 21 H 1.48501 * 109.47307 * 209.99915 * 19 17 15 22 22 H 1.48503 * 109.46830 * 329.99746 * 19 17 15 23 23 C 1.46924 * 118.74561 * 53.60983 * 12 11 10 24 24 C 1.53044 * 109.45887 * 60.09259 * 9 8 7 25 25 N 1.29028 * 110.16590 * 0.24225 * 8 7 6 26 26 H 1.09002 * 109.47289 * 300.00201 * 1 2 3 27 27 H 1.09007 * 109.47332 * 60.00141 * 1 2 3 28 28 H 1.08994 * 109.47640 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47119 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47057 * 299.99754 * 3 2 1 31 31 H 1.09002 * 109.47058 * 59.99658 * 3 2 1 32 32 H 1.09003 * 109.47499 * 300.00359 * 4 2 1 33 33 H 1.09002 * 109.47647 * 60.00267 * 4 2 1 34 34 H 1.09002 * 109.46902 * 180.02562 * 4 2 1 35 35 H 1.07999 * 126.03482 * 0.04666 * 6 5 2 36 36 H 1.09002 * 109.45032 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.50006 * 61.43479 * 10 9 8 38 38 H 1.08994 * 109.52399 * 301.35086 * 10 9 8 39 39 H 1.08998 * 109.58891 * 185.58060 * 11 10 9 40 40 H 1.08997 * 109.58520 * 65.14896 * 11 10 9 41 41 H 0.96998 * 119.99950 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58674 * 66.17447 * 23 12 11 43 43 H 1.08998 * 109.59192 * 186.60431 * 23 12 11 44 44 H 1.09002 * 109.49739 * 298.56398 * 24 9 8 45 45 H 1.08996 * 109.49711 * 58.62859 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.2175 -1.3222 2.0953 7 16 2.2087 -2.0159 3.3763 8 6 3.6200 -1.4137 2.6221 9 6 5.0220 -1.5981 3.1429 10 6 5.1352 -0.9722 4.5349 11 6 6.5704 -1.1310 5.0466 12 7 6.9371 -2.5527 4.9926 13 6 7.4137 -3.1810 6.0857 14 8 7.6238 -4.3792 6.0556 15 6 7.6785 -2.4219 7.3088 16 1 7.4168 -1.3755 7.3623 17 6 8.2713 -3.0527 8.4099 18 7 8.5876 -4.3189 8.3452 19 14 8.6099 -2.0839 9.9707 20 1 7.4321 -2.1685 10.8712 21 1 9.7991 -2.6501 10.6566 22 1 8.8677 -0.6628 9.6251 23 6 6.7802 -3.2751 3.7228 24 6 5.3427 -3.0923 3.2259 25 7 3.3104 -0.7738 1.5453 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6765 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1393 34 1 3.1299 -0.7217 -1.2490 35 1 0.1416 -1.3813 2.0218 36 1 5.7268 -1.1129 2.4677 37 1 4.4483 -1.4741 5.2164 38 1 4.8838 0.0869 4.4796 39 1 6.6329 -0.7764 6.0754 40 1 7.2485 -0.5546 4.4174 41 1 8.9985 -4.7556 9.1076 42 1 7.4755 -2.8735 2.9857 43 1 6.9811 -4.3351 3.8782 44 1 4.6539 -3.5742 3.9198 45 1 5.2385 -3.5421 2.2386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185933977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:35 Heat of formation + Delta-G solvation = -12.087853 kcal Electronic energy + Delta-G solvation = -25011.153733 eV Core-core repulsion = 21540.580753 eV Total energy + Delta-G solvation = -3470.572980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.38361 -38.67851 -36.64232 -35.61875 -32.67881 -32.26470 -30.64619 -29.61679 -27.60756 -27.43426 -26.51590 -25.41813 -23.61501 -22.67585 -21.07657 -20.49172 -19.32740 -18.42805 -17.36268 -16.55700 -16.03315 -15.63631 -14.98446 -14.72818 -14.48713 -14.22740 -14.01711 -13.98315 -13.93934 -13.34416 -13.18515 -12.98427 -12.50046 -12.46215 -12.35866 -12.14753 -11.89148 -11.85216 -11.55543 -11.25913 -11.17081 -11.13795 -11.12808 -10.92784 -10.82408 -10.77025 -10.66052 -10.26110 -10.17378 -9.91511 -9.55315 -9.32016 -8.87179 -8.66750 -7.59723 -7.25730 -6.21376 -4.66346 0.74005 1.41650 1.82724 2.78643 3.12714 3.19903 3.22680 3.89281 4.07306 4.50415 4.51833 4.58277 4.66360 4.73624 4.98483 5.07986 5.11444 5.13055 5.30856 5.40165 5.43091 5.53525 5.55171 5.58112 5.64816 5.70364 5.73755 5.79261 5.79897 5.82218 5.93606 6.05824 6.08692 6.10553 6.15894 6.18943 6.29281 6.42983 6.47072 6.55508 6.72091 7.44052 7.59998 7.79215 8.11767 8.33304 9.00646 9.41373 10.55886 10.74460 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.002739 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.591648 B =10219.061780 C =10411.856084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.008 3.992 3 C -0.134 4.134 4 C -0.135 4.135 5 C 0.081 3.919 6 C -0.277 4.277 7 S 0.123 5.877 8 C 0.074 3.926 9 C -0.011 4.011 10 C -0.127 4.127 11 C 0.126 3.874 12 N -0.643 5.643 13 C 0.560 3.440 14 O -0.578 6.578 15 C -0.544 4.544 16 H 0.073 0.927 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 C 0.123 3.877 24 C -0.124 4.124 25 N -0.473 5.473 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.173 0.827 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.268 0.732 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 9.683 -14.381 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.005 3.995 3 C -0.192 4.192 4 C -0.193 4.193 5 C -0.051 4.051 6 C -0.416 4.416 7 S 0.380 5.620 8 C -0.204 4.204 9 C -0.033 4.033 10 C -0.167 4.167 11 C 0.001 3.999 12 N -0.382 5.382 13 C 0.366 3.634 14 O -0.460 6.460 15 C -0.581 4.581 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.188 1.188 23 C -0.001 4.001 24 C -0.163 4.163 25 N -0.187 5.187 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.190 0.810 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.619 8.480 -13.670 21.737 hybrid contribution -0.364 0.976 -0.021 1.042 sum -14.983 9.456 -13.692 22.391 Atomic orbital electron populations 1.21955 0.93811 1.02095 1.02245 1.19104 0.94877 0.94970 0.90561 1.21797 1.02190 0.93834 1.01373 1.21816 1.02036 0.99809 0.95623 1.20126 0.87360 0.99736 0.97908 1.26862 1.04836 1.09613 1.00270 1.84210 0.99436 1.52217 1.26164 1.27276 1.01014 0.98063 0.94091 1.19930 0.87623 0.98185 0.97559 1.22113 1.00096 1.00228 0.94246 1.21387 0.91890 0.84226 1.02414 1.48216 1.70373 1.09316 1.10275 1.18246 0.76305 0.86875 0.81980 1.90592 1.56744 1.15281 1.83397 1.20979 1.42988 0.97081 0.97048 0.90889 1.25730 0.93530 0.94559 0.99397 1.70012 1.29867 1.10021 1.29744 0.86404 0.78373 0.80519 0.81685 1.19722 1.20460 1.18848 1.21096 0.92800 0.99518 0.86733 1.22062 0.99709 0.93335 1.01227 1.66072 1.18267 1.18560 1.15759 0.92251 0.91843 0.92284 0.91545 0.92400 0.92865 0.92827 0.92253 0.91742 0.80986 0.88346 0.91300 0.91401 0.88466 0.93622 0.92079 0.93690 0.89337 0.91431 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 7.27 37.16 0.27 -0.78 16 2 C 0.01 0.07 0.98 -155.66 -0.15 -0.08 16 3 C -0.13 -1.23 8.37 37.16 0.31 -0.92 16 4 C -0.14 -1.22 8.46 37.16 0.31 -0.91 16 5 C 0.08 0.98 5.29 -84.22 -0.45 0.53 16 6 C -0.28 -3.11 10.13 29.12 0.30 -2.82 16 7 S 0.12 1.56 22.61 -107.50 -2.43 -0.87 16 8 C 0.07 1.03 6.03 -13.46 -0.08 0.95 16 9 C -0.01 -0.16 2.58 -91.73 -0.24 -0.39 16 10 C -0.13 -1.92 5.24 -26.61 -0.14 -2.06 16 11 C 0.13 2.25 6.31 -3.71 -0.02 2.23 16 12 N -0.64 -14.21 2.97 -174.43 -0.52 -14.73 16 13 C 0.56 15.62 7.62 -12.98 -0.10 15.52 16 14 O -0.58 -18.42 14.46 5.20 0.08 -18.35 16 15 C -0.54 -14.93 8.86 -35.63 -0.32 -15.25 16 16 H 0.07 1.81 5.69 -52.49 -0.30 1.51 16 17 C 0.09 2.40 5.50 -17.36 -0.10 2.31 16 18 N -0.77 -22.74 11.84 55.55 0.66 -22.08 16 19 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 23 C 0.12 2.35 6.44 -3.71 -0.02 2.32 16 24 C -0.12 -1.94 5.25 -26.61 -0.14 -2.08 16 25 N -0.47 -6.61 10.34 -8.06 -0.08 -6.70 16 26 H 0.06 0.42 7.93 -51.93 -0.41 0.01 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 7.53 -51.93 -0.39 0.02 16 29 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.17 1.51 6.78 -52.49 -0.36 1.15 16 36 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.07 1.10 7.98 -51.93 -0.41 0.69 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.83 5.38 -51.93 -0.28 1.55 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 1.91 7.00 -51.93 -0.36 1.54 16 44 H 0.07 1.14 7.98 -51.93 -0.41 0.72 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -33.16 369.61 -9.45 -42.61 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.13 Total: 1.23 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.56 Total: -1.42 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.06 Total: -43.51 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.08 Total: -18.35 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.43 Total: -0.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.16 -9.45 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185933977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.525 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds