Wall clock time and date at job start Tue Mar 31 2020 13:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47412 * 2 1 4 4 C 1.52997 * 109.46879 * 239.99698 * 2 1 3 5 5 C 1.50701 * 109.46955 * 120.00135 * 2 1 3 6 6 C 1.33644 * 122.75047 * 4.96876 * 5 2 1 7 7 S 1.76196 * 107.92302 * 180.02562 * 6 5 2 8 8 C 1.70978 * 90.28543 * 0.02562 * 7 6 5 9 9 C 1.50696 * 124.91658 * 179.97438 * 8 7 6 10 10 C 1.53036 * 109.45879 * 300.02298 * 9 8 7 11 11 C 1.53198 * 109.31202 * 181.38618 * 10 9 8 12 12 N 1.46924 * 108.77218 * 305.36628 * 11 10 9 13 13 C 1.34787 * 120.62801 * 233.33090 * 12 11 10 14 14 O 1.21691 * 119.99640 * 174.75820 * 13 12 11 15 15 C 1.46370 * 119.99692 * 354.76262 * 13 12 11 16 16 H 1.07992 * 120.00386 * 4.99795 * 15 13 12 17 17 C 1.40057 * 119.99766 * 185.00657 * 15 13 12 18 18 N 1.30672 * 119.99737 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00194 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47220 * 89.99734 * 19 17 15 21 21 H 1.48501 * 109.47307 * 209.99915 * 19 17 15 22 22 H 1.48503 * 109.46830 * 329.99746 * 19 17 15 23 23 C 1.46924 * 118.74561 * 53.60983 * 12 11 10 24 24 C 1.53044 * 109.45887 * 60.09259 * 9 8 7 25 25 N 1.29028 * 110.16590 * 0.24225 * 8 7 6 26 26 H 1.09002 * 109.47289 * 300.00201 * 1 2 3 27 27 H 1.09007 * 109.47332 * 60.00141 * 1 2 3 28 28 H 1.08994 * 109.47640 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47119 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47057 * 299.99754 * 3 2 1 31 31 H 1.09002 * 109.47058 * 59.99658 * 3 2 1 32 32 H 1.09003 * 109.47499 * 300.00359 * 4 2 1 33 33 H 1.09002 * 109.47647 * 60.00267 * 4 2 1 34 34 H 1.09002 * 109.46902 * 180.02562 * 4 2 1 35 35 H 1.07999 * 126.03482 * 0.04666 * 6 5 2 36 36 H 1.09002 * 109.45032 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.50006 * 61.43479 * 10 9 8 38 38 H 1.08994 * 109.52399 * 301.35086 * 10 9 8 39 39 H 1.08998 * 109.58891 * 185.58060 * 11 10 9 40 40 H 1.08997 * 109.58520 * 65.14896 * 11 10 9 41 41 H 0.96998 * 119.99950 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58674 * 66.17447 * 23 12 11 43 43 H 1.08998 * 109.59192 * 186.60431 * 23 12 11 44 44 H 1.09002 * 109.49739 * 298.56398 * 24 9 8 45 45 H 1.08996 * 109.49711 * 58.62859 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.2175 -1.3222 2.0953 7 16 2.2087 -2.0159 3.3763 8 6 3.6200 -1.4137 2.6221 9 6 5.0220 -1.5981 3.1429 10 6 5.1352 -0.9722 4.5349 11 6 6.5704 -1.1310 5.0466 12 7 6.9371 -2.5527 4.9926 13 6 7.4137 -3.1810 6.0857 14 8 7.6238 -4.3792 6.0556 15 6 7.6785 -2.4219 7.3088 16 1 7.4168 -1.3755 7.3623 17 6 8.2713 -3.0527 8.4099 18 7 8.5876 -4.3189 8.3452 19 14 8.6099 -2.0839 9.9707 20 1 7.4321 -2.1685 10.8712 21 1 9.7991 -2.6501 10.6566 22 1 8.8677 -0.6628 9.6251 23 6 6.7802 -3.2751 3.7228 24 6 5.3427 -3.0923 3.2259 25 7 3.3104 -0.7738 1.5453 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6765 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1393 34 1 3.1299 -0.7217 -1.2490 35 1 0.1416 -1.3813 2.0218 36 1 5.7268 -1.1129 2.4677 37 1 4.4483 -1.4741 5.2164 38 1 4.8838 0.0869 4.4796 39 1 6.6329 -0.7764 6.0754 40 1 7.2485 -0.5546 4.4174 41 1 8.9985 -4.7556 9.1076 42 1 7.4755 -2.8735 2.9857 43 1 6.9811 -4.3351 3.8782 44 1 4.6539 -3.5742 3.9198 45 1 5.2385 -3.5421 2.2386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185933977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:34 Heat of formation + Delta-G solvation = -32.141899 kcal Electronic energy + Delta-G solvation = -25012.023342 eV Core-core repulsion = 21540.580753 eV Total energy + Delta-G solvation = -3471.442589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.34371 -40.27289 -38.07470 -36.87112 -34.68301 -33.92028 -32.11144 -30.63221 -28.73201 -28.12583 -28.07499 -26.67755 -24.80515 -24.14966 -22.46060 -21.58021 -20.85375 -19.59610 -18.48004 -18.22392 -17.69561 -16.84049 -16.30436 -15.99156 -15.84554 -15.61934 -15.54783 -14.98326 -14.77854 -14.63004 -14.50054 -14.19704 -14.11917 -13.46857 -13.35876 -13.24271 -13.10410 -12.92320 -12.84813 -12.72941 -12.56411 -12.54048 -12.32300 -12.19855 -11.97232 -11.88100 -11.85272 -11.65896 -11.54569 -11.51593 -10.91632 -10.56624 -10.32512 -9.77509 -9.62269 -9.09501 -8.27318 -6.81595 -0.24054 0.44627 0.86521 1.41431 1.42502 1.57572 1.82461 2.25034 2.47674 2.81481 2.96209 3.58007 3.68660 3.77983 3.86184 3.91626 4.08157 4.16771 4.20361 4.36400 4.37936 4.42375 4.48854 4.56243 4.76748 4.78481 4.79768 4.87284 4.89355 4.89728 4.92102 4.94767 5.01961 5.02777 5.05792 5.08627 5.17125 5.34263 5.37572 5.41205 5.41850 5.48378 5.78997 6.16492 6.41957 6.81541 6.90247 7.44123 8.49125 8.69439 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.002739 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.591648 B =10219.061780 C =10411.856084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.006 3.994 3 C -0.131 4.131 4 C -0.132 4.132 5 C 0.065 3.935 6 C -0.263 4.263 7 S 0.116 5.884 8 C 0.056 3.944 9 C -0.001 4.001 10 C -0.116 4.116 11 C 0.122 3.878 12 N -0.645 5.645 13 C 0.542 3.458 14 O -0.633 6.633 15 C -0.568 4.568 16 H 0.096 0.904 17 C 0.029 3.971 18 N -0.824 5.824 19 Si 0.993 3.007 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.246 1.246 23 C 0.121 3.879 24 C -0.110 4.110 25 N -0.483 5.483 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.199 0.801 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.273 0.727 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.915 12.377 -15.101 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.003 3.997 3 C -0.189 4.189 4 C -0.190 4.190 5 C -0.067 4.067 6 C -0.401 4.401 7 S 0.372 5.628 8 C -0.222 4.222 9 C -0.023 4.023 10 C -0.155 4.155 11 C -0.001 4.001 12 N -0.382 5.382 13 C 0.348 3.652 14 O -0.520 6.520 15 C -0.604 4.604 16 H 0.113 0.887 17 C -0.186 4.186 18 N -0.454 5.454 19 Si 0.813 3.187 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.169 1.169 23 C -0.003 4.003 24 C -0.150 4.150 25 N -0.197 5.197 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.216 0.784 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.512 11.229 -14.445 24.645 hybrid contribution 0.154 0.145 0.073 0.224 sum -16.358 11.374 -14.372 24.566 Atomic orbital electron populations 1.21946 0.91852 1.02744 1.03259 1.19255 0.96396 0.94659 0.89427 1.21768 1.00963 0.93946 1.02192 1.21792 1.00804 0.99982 0.96411 1.20587 0.86791 1.00240 0.99048 1.27193 1.05918 1.08080 0.98915 1.84268 0.99484 1.52288 1.26807 1.27015 1.00856 0.99492 0.94832 1.19727 0.88637 0.96700 0.97271 1.21984 0.97597 1.01704 0.94253 1.21574 0.94220 0.81728 1.02599 1.48076 1.69176 1.11072 1.09868 1.18647 0.76309 0.86477 0.83734 1.90541 1.59149 1.17549 1.84794 1.21518 1.43142 0.98258 0.97482 0.88654 1.26985 0.92550 0.95524 1.03573 1.70194 1.31216 1.12565 1.31383 0.85079 0.78367 0.79262 0.76005 1.18736 1.20033 1.16887 1.21197 0.95659 0.97427 0.85971 1.21891 0.96736 0.94837 1.01512 1.66072 1.19570 1.18410 1.15625 0.91964 0.90195 0.91804 0.93417 0.90396 0.93218 0.93069 0.90232 0.93631 0.78395 0.87776 0.92446 0.88918 0.89456 0.91502 0.91700 0.91676 0.92687 0.92871 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.27 71.98 0.52 -1.05 16 2 C 0.01 0.09 0.98 -52.93 -0.05 0.04 16 3 C -0.13 -2.12 8.37 71.98 0.60 -1.52 16 4 C -0.13 -2.12 8.46 71.98 0.61 -1.51 16 5 C 0.07 1.44 5.29 41.52 0.22 1.65 16 6 C -0.26 -5.27 10.13 66.78 0.68 -4.60 16 7 S 0.12 2.77 22.61 -56.49 -1.28 1.50 16 8 C 0.06 1.49 6.03 88.52 0.53 2.02 16 9 C 0.00 -0.04 2.58 -11.51 -0.03 -0.07 16 10 C -0.12 -3.35 5.24 30.67 0.16 -3.19 16 11 C 0.12 4.28 6.31 86.37 0.55 4.82 16 12 N -0.65 -29.12 2.97 -823.97 -2.45 -31.57 16 13 C 0.54 31.44 7.62 86.36 0.66 32.10 16 14 O -0.63 -42.69 14.46 -4.32 -0.06 -42.75 16 15 C -0.57 -31.68 8.86 24.83 0.22 -31.46 16 16 H 0.10 4.70 5.69 -2.91 -0.02 4.69 16 17 C 0.03 1.58 5.50 85.31 0.47 2.05 16 18 N -0.82 -50.59 11.84 21.84 0.26 -50.34 16 19 Si 0.99 40.59 29.56 68.60 2.03 42.61 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 23 C 0.12 4.74 6.44 86.36 0.56 5.30 16 24 C -0.11 -3.46 5.25 30.68 0.16 -3.30 16 25 N -0.48 -12.74 10.34 -179.40 -1.85 -14.60 16 26 H 0.06 0.67 7.93 -2.39 -0.02 0.66 16 27 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.66 7.53 -2.39 -0.02 0.65 16 29 H 0.05 0.94 8.07 -2.39 -0.02 0.92 16 30 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.20 2.81 6.78 -2.91 -0.02 2.80 16 36 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.06 1.80 7.98 -2.39 -0.02 1.78 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.09 3.23 5.38 -2.39 -0.01 3.21 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.27 15.22 8.29 -92.71 -0.77 14.46 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.05 2.52 7.00 -2.39 -0.02 2.50 16 44 H 0.05 1.82 7.98 -2.39 -0.02 1.80 16 45 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -75.59 369.61 3.47 -72.12 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.98 Total: 21.73 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.85 Total: 1.30 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -4.04 Total: -96.50 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -0.06 Total: -42.75 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.28 Total: 1.50 kcal Total: -75.59 3.47 -72.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185933977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.974 kcal (2) G-P(sol) polarization free energy of solvation -75.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds