Wall clock time and date at job start Tue Mar 31 2020 13:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47340 * 2 1 4 4 C 1.53005 * 109.46665 * 335.87073 * 3 2 1 5 5 C 1.53003 * 109.47336 * 215.87538 * 3 2 1 6 6 N 1.46501 * 109.47363 * 95.87007 * 3 2 1 7 7 C 1.46499 * 119.99932 * 244.07300 * 6 3 2 8 8 C 1.50703 * 109.46900 * 269.99834 * 7 6 3 9 9 H 1.07999 * 119.99873 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99959 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99956 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99847 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47007 * 90.00458 * 12 10 8 14 14 H 1.48506 * 109.47189 * 210.00336 * 12 10 8 15 15 H 1.48497 * 109.47257 * 330.00012 * 12 10 8 16 16 C 1.34770 * 119.99641 * 64.07145 * 6 3 2 17 17 O 1.21521 * 119.99761 * 209.42976 * 16 6 3 18 18 C 1.48160 * 120.00344 * 29.43333 * 16 6 3 19 19 C 1.40051 * 120.87686 * 318.04634 * 18 16 6 20 20 C 1.37942 * 119.18269 * 180.25791 * 19 18 16 21 21 N 1.31915 * 121.01181 * 359.74402 * 20 19 18 22 22 C 1.32383 * 121.93291 * 0.02562 * 21 20 19 23 23 S 1.76208 * 119.64775 * 179.97438 * 22 21 20 24 24 C 1.81397 * 102.99865 * 0.02562 * 23 22 21 25 25 C 1.39179 * 120.70253 * 0.02562 * 22 21 20 26 26 H 1.09002 * 109.47399 * 60.00278 * 1 2 3 27 27 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47502 * 300.00158 * 1 2 3 29 29 H 1.08999 * 109.47232 * 239.99415 * 2 1 3 30 30 H 1.09007 * 109.46962 * 119.99841 * 2 1 3 31 31 H 1.09010 * 109.46888 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47154 * 299.99576 * 4 3 2 33 33 H 1.08997 * 109.47303 * 60.00878 * 4 3 2 34 34 H 1.09001 * 109.46555 * 254.28573 * 5 3 2 35 35 H 1.09003 * 109.46615 * 14.28056 * 5 3 2 36 36 H 1.08999 * 109.47318 * 134.28466 * 5 3 2 37 37 H 1.09000 * 109.47646 * 29.99437 * 7 6 3 38 38 H 1.08997 * 109.46930 * 149.99942 * 7 6 3 39 39 H 0.97000 * 120.00170 * 179.97438 * 11 10 8 40 40 H 1.07994 * 120.40306 * 0.02562 * 19 18 16 41 41 H 1.08010 * 119.49585 * 179.76990 * 20 19 18 42 42 H 1.08996 * 109.47092 * 299.99459 * 24 23 22 43 43 H 1.08998 * 109.47622 * 59.99874 * 24 23 22 44 44 H 1.08999 * 109.46941 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.54229 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 0.9687 2.3621 -0.5897 5 6 3.3120 1.5337 -0.8453 6 7 2.3360 1.8558 1.3740 7 6 1.5704 2.9403 1.9937 8 6 2.2511 4.2564 1.7189 9 1 3.1625 4.2825 1.1401 10 6 1.7102 5.4273 2.2063 11 7 2.3040 6.5759 1.9661 12 14 0.1333 5.3822 3.2067 13 1 0.4645 5.2275 4.6460 14 1 -0.6174 6.6475 3.0047 15 1 -0.7008 4.2359 2.7646 16 6 3.3126 1.2384 2.0678 17 8 3.2400 1.1574 3.2781 18 6 4.4747 0.6584 1.3549 19 6 4.3039 -0.0503 0.1591 20 6 5.4098 -0.5801 -0.4726 21 7 6.6194 -0.4241 0.0300 22 6 6.8298 0.2416 1.1547 23 16 8.4712 0.4128 1.7723 24 6 9.4653 -0.4719 0.5395 25 6 5.7682 0.8069 1.8551 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3323 3.3898 -0.5902 32 1 0.7486 2.0546 -1.6120 33 1 0.0626 2.2972 0.0125 34 1 4.1772 1.6345 -0.1900 35 1 3.4146 0.6299 -1.4460 36 1 3.2504 2.4015 -1.5020 37 1 0.5633 2.9582 1.5771 38 1 1.5156 2.7773 3.0700 39 1 1.9233 7.3997 2.3087 40 1 3.3180 -0.1835 -0.2612 41 1 5.2834 -1.1308 -1.3932 42 1 9.1424 -1.5118 0.4909 43 1 9.3340 -0.0046 -0.4364 44 1 10.5169 -0.4305 0.8233 45 1 5.9427 1.3491 2.7726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189915988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:45 Heat of formation + Delta-G solvation = 85.158784 kcal Electronic energy + Delta-G solvation = -26504.884299 eV Core-core repulsion = 23038.528249 eV Total energy + Delta-G solvation = -3466.356050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59505 -38.96846 -37.42478 -33.92732 -33.01562 -32.12740 -31.62305 -29.63846 -29.06283 -28.40501 -26.94900 -24.70506 -23.79953 -23.22064 -22.02697 -21.05007 -18.92064 -17.16414 -16.99656 -16.66568 -16.45065 -15.89792 -15.33261 -15.08929 -14.80885 -14.65802 -14.26881 -14.04222 -13.95190 -13.69519 -13.51675 -13.21584 -12.98173 -12.57408 -12.46879 -12.45085 -12.00606 -11.79167 -11.48460 -11.41772 -11.16595 -11.14032 -10.96010 -10.61906 -10.56045 -10.51102 -10.45676 -10.20267 -9.91225 -9.64443 -9.56699 -9.24968 -8.98947 -8.65140 -7.74897 -7.43547 -6.16006 -4.15732 0.90381 1.10389 1.45641 2.24506 3.01198 3.23713 3.29948 3.32838 3.52012 3.77526 4.33045 4.54266 4.58407 4.71786 4.77055 5.00125 5.04088 5.09182 5.10359 5.10954 5.16867 5.32088 5.34302 5.53012 5.58420 5.66433 5.71148 5.72498 5.76156 5.87795 5.90113 6.04157 6.09622 6.14149 6.20499 6.27418 6.48525 6.49600 6.71249 6.79382 6.87858 7.28722 7.51887 7.72351 8.08820 8.37854 8.62595 8.87829 9.43817 10.96712 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.004574 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.646206 B = 6120.513220 C = 7315.414200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.168 3.832 4 C -0.152 4.152 5 C -0.197 4.197 6 N -0.589 5.589 7 C 0.213 3.787 8 C -0.533 4.533 9 H 0.076 0.924 10 C 0.076 3.924 11 N -0.893 5.893 12 Si 0.872 3.128 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.571 3.429 17 O -0.524 6.524 18 C -0.083 4.083 19 C -0.138 4.138 20 C 0.068 3.932 21 N -0.473 5.473 22 C 0.099 3.901 23 S -0.080 6.080 24 C -0.129 4.129 25 C -0.088 4.088 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.265 0.735 40 H 0.182 0.818 41 H 0.160 0.840 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -15.415 -8.278 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C 0.082 3.918 4 C -0.209 4.209 5 C -0.254 4.254 6 N -0.321 5.321 7 C 0.094 3.906 8 C -0.571 4.571 9 H 0.094 0.906 10 C -0.127 4.127 11 N -0.531 5.531 12 Si 0.699 3.301 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.190 1.190 16 C 0.358 3.642 17 O -0.400 6.400 18 C -0.096 4.096 19 C -0.160 4.160 20 C -0.090 4.090 21 N -0.186 5.186 22 C -0.151 4.151 23 S 0.158 5.842 24 C -0.298 4.298 25 C -0.114 4.114 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.198 0.802 41 H 0.177 0.823 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.366 -15.054 -7.057 17.471 hybrid contribution -1.845 0.054 -0.284 1.868 sum 3.521 -15.001 -7.341 17.067 Atomic orbital electron populations 1.21901 0.94869 1.01257 1.02724 1.22425 0.97655 0.96227 1.02033 1.20438 0.95332 0.93556 0.82465 1.22290 0.98105 1.01197 0.99286 1.23829 0.98970 1.01871 1.00681 1.47784 1.35173 1.36147 1.13033 1.19808 0.91972 0.84667 0.94199 1.21336 1.11512 0.89047 1.35254 0.90637 1.24822 0.97105 0.95258 0.95504 1.69889 1.39734 0.97983 1.45524 0.86915 0.83932 0.77793 0.81507 1.19868 1.21018 1.18954 1.17878 0.81917 0.77857 0.86569 1.90726 1.78281 1.56555 1.14395 1.20526 0.94771 0.98762 0.95571 1.23726 1.04159 0.94326 0.93784 1.22444 0.87057 0.99324 1.00192 1.67732 1.25496 1.14904 1.10495 1.22720 0.97881 0.99437 0.95052 1.85602 0.95080 1.69601 1.33935 1.23406 1.01270 1.03677 1.01452 1.21661 0.90525 0.98872 1.00391 0.91750 0.93132 0.92128 0.90615 0.91245 0.89513 0.92230 0.91426 0.88944 0.91034 0.91619 0.94272 0.94546 0.92469 0.80199 0.82314 0.89663 0.89586 0.88144 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.58 37.15 0.32 -1.37 16 2 C -0.15 -1.75 4.18 -26.74 -0.11 -1.87 16 3 C 0.17 2.55 0.95 -131.82 -0.12 2.42 16 4 C -0.15 -2.29 5.70 37.16 0.21 -2.08 16 5 C -0.20 -2.76 7.32 37.16 0.27 -2.49 16 6 N -0.59 -11.68 2.40 -161.16 -0.39 -12.07 16 7 C 0.21 4.97 3.79 -5.19 -0.02 4.95 16 8 C -0.53 -14.43 9.01 -34.44 -0.31 -14.74 16 9 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 10 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 11 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 12 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 16 C 0.57 11.79 6.05 -12.19 -0.07 11.72 16 17 O -0.52 -12.57 16.75 5.35 0.09 -12.48 16 18 C -0.08 -1.44 4.15 -104.68 -0.43 -1.87 16 19 C -0.14 -1.86 4.76 -39.01 -0.19 -2.04 16 20 C 0.07 0.84 10.95 -17.62 -0.19 0.65 16 21 N -0.47 -6.70 9.40 -12.16 -0.11 -6.81 16 22 C 0.10 1.52 7.00 -16.96 -0.12 1.40 16 23 S -0.08 -1.05 22.55 -107.50 -2.42 -3.47 16 24 C -0.13 -1.24 10.01 101.05 1.01 -0.23 16 25 C -0.09 -1.52 9.52 -38.77 -0.37 -1.89 16 26 H 0.06 0.65 6.45 -51.93 -0.33 0.32 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.80 7.62 -51.93 -0.40 0.40 16 29 H 0.08 0.68 6.54 -51.93 -0.34 0.34 16 30 H 0.07 0.93 6.57 -51.92 -0.34 0.59 16 31 H 0.09 1.59 7.08 -51.92 -0.37 1.22 16 32 H 0.06 0.70 7.62 -51.93 -0.40 0.31 16 33 H 0.07 1.03 5.02 -51.93 -0.26 0.77 16 34 H 0.09 1.52 3.79 -66.45 -0.25 1.27 16 35 H 0.07 0.74 5.25 -51.93 -0.27 0.47 16 36 H 0.07 0.95 7.65 -51.93 -0.40 0.55 16 37 H 0.04 0.86 4.86 -51.93 -0.25 0.61 16 38 H 0.04 0.92 6.76 -51.93 -0.35 0.57 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.18 2.09 1.34 -52.55 -0.07 2.02 16 41 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 45 H 0.15 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -32.23 352.32 -7.80 -40.03 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.16 Total: 4.54 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.22 Total: -5.42 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.27 Total: -44.68 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.42 Total: -3.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.23 -7.80 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189915988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.193 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds