Wall clock time and date at job start Tue Mar 31 2020 13:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47340 * 2 1 4 4 C 1.53005 * 109.46665 * 335.87073 * 3 2 1 5 5 C 1.53003 * 109.47336 * 215.87538 * 3 2 1 6 6 N 1.46501 * 109.47363 * 95.87007 * 3 2 1 7 7 C 1.46499 * 119.99932 * 244.07300 * 6 3 2 8 8 C 1.50703 * 109.46900 * 269.99834 * 7 6 3 9 9 H 1.07999 * 119.99873 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99959 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99956 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99847 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47007 * 90.00458 * 12 10 8 14 14 H 1.48506 * 109.47189 * 210.00336 * 12 10 8 15 15 H 1.48497 * 109.47257 * 330.00012 * 12 10 8 16 16 C 1.34770 * 119.99641 * 64.07145 * 6 3 2 17 17 O 1.21521 * 119.99761 * 209.42976 * 16 6 3 18 18 C 1.48160 * 120.00344 * 29.43333 * 16 6 3 19 19 C 1.40051 * 120.87686 * 318.04634 * 18 16 6 20 20 C 1.37942 * 119.18269 * 180.25791 * 19 18 16 21 21 N 1.31915 * 121.01181 * 359.74402 * 20 19 18 22 22 C 1.32383 * 121.93291 * 0.02562 * 21 20 19 23 23 S 1.76208 * 119.64775 * 179.97438 * 22 21 20 24 24 C 1.81397 * 102.99865 * 0.02562 * 23 22 21 25 25 C 1.39179 * 120.70253 * 0.02562 * 22 21 20 26 26 H 1.09002 * 109.47399 * 60.00278 * 1 2 3 27 27 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47502 * 300.00158 * 1 2 3 29 29 H 1.08999 * 109.47232 * 239.99415 * 2 1 3 30 30 H 1.09007 * 109.46962 * 119.99841 * 2 1 3 31 31 H 1.09010 * 109.46888 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47154 * 299.99576 * 4 3 2 33 33 H 1.08997 * 109.47303 * 60.00878 * 4 3 2 34 34 H 1.09001 * 109.46555 * 254.28573 * 5 3 2 35 35 H 1.09003 * 109.46615 * 14.28056 * 5 3 2 36 36 H 1.08999 * 109.47318 * 134.28466 * 5 3 2 37 37 H 1.09000 * 109.47646 * 29.99437 * 7 6 3 38 38 H 1.08997 * 109.46930 * 149.99942 * 7 6 3 39 39 H 0.97000 * 120.00170 * 179.97438 * 11 10 8 40 40 H 1.07994 * 120.40306 * 0.02562 * 19 18 16 41 41 H 1.08010 * 119.49585 * 179.76990 * 20 19 18 42 42 H 1.08996 * 109.47092 * 299.99459 * 24 23 22 43 43 H 1.08998 * 109.47622 * 59.99874 * 24 23 22 44 44 H 1.08999 * 109.46941 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.54229 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 0.9687 2.3621 -0.5897 5 6 3.3120 1.5337 -0.8453 6 7 2.3360 1.8558 1.3740 7 6 1.5704 2.9403 1.9937 8 6 2.2511 4.2564 1.7189 9 1 3.1625 4.2825 1.1401 10 6 1.7102 5.4273 2.2063 11 7 2.3040 6.5759 1.9661 12 14 0.1333 5.3822 3.2067 13 1 0.4645 5.2275 4.6460 14 1 -0.6174 6.6475 3.0047 15 1 -0.7008 4.2359 2.7646 16 6 3.3126 1.2384 2.0678 17 8 3.2400 1.1574 3.2781 18 6 4.4747 0.6584 1.3549 19 6 4.3039 -0.0503 0.1591 20 6 5.4098 -0.5801 -0.4726 21 7 6.6194 -0.4241 0.0300 22 6 6.8298 0.2416 1.1547 23 16 8.4712 0.4128 1.7723 24 6 9.4653 -0.4719 0.5395 25 6 5.7682 0.8069 1.8551 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3323 3.3898 -0.5902 32 1 0.7486 2.0546 -1.6120 33 1 0.0626 2.2972 0.0125 34 1 4.1772 1.6345 -0.1900 35 1 3.4146 0.6299 -1.4460 36 1 3.2504 2.4015 -1.5020 37 1 0.5633 2.9582 1.5771 38 1 1.5156 2.7773 3.0700 39 1 1.9233 7.3997 2.3087 40 1 3.3180 -0.1835 -0.2612 41 1 5.2834 -1.1308 -1.3932 42 1 9.1424 -1.5118 0.4909 43 1 9.3340 -0.0046 -0.4364 44 1 10.5169 -0.4305 0.8233 45 1 5.9427 1.3491 2.7726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189915988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:45 Heat of formation + Delta-G solvation = 64.193790 kcal Electronic energy + Delta-G solvation = -26505.793409 eV Core-core repulsion = 23038.528249 eV Total energy + Delta-G solvation = -3467.265160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.86983 -40.25446 -38.90293 -35.65328 -34.30843 -33.96568 -32.77820 -30.74355 -30.32693 -29.69786 -28.25922 -26.15567 -24.90333 -24.36814 -23.73217 -22.42525 -20.21406 -19.15207 -18.41881 -17.99839 -17.64419 -17.15814 -16.90103 -16.37035 -16.14125 -15.97599 -15.61314 -15.36688 -15.14509 -14.87706 -14.72862 -14.48860 -14.22624 -14.05141 -13.81664 -13.53157 -13.36645 -13.08481 -12.96915 -12.70893 -12.53893 -12.48488 -12.40136 -12.13651 -11.94513 -11.74254 -11.68176 -11.59824 -11.50039 -11.18874 -10.85901 -10.81385 -10.62537 -10.15001 -9.38343 -8.49095 -8.35472 -6.39992 -0.32217 -0.05537 0.41537 1.29902 1.33981 1.34699 1.41533 1.48191 2.07362 2.28131 2.58762 2.98298 3.26452 3.54426 3.64144 3.69680 3.85484 3.89750 3.97878 4.16048 4.33295 4.36387 4.38605 4.47004 4.52485 4.56991 4.62745 4.67029 4.74558 4.78016 4.87993 4.90393 4.93245 4.98684 5.02932 5.10102 5.18970 5.34614 5.38620 5.41524 5.46539 5.51966 5.66812 6.22317 6.55171 6.61318 6.61583 6.99751 7.24992 8.80798 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.004574 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.646206 B = 6120.513220 C = 7315.414200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C 0.155 3.845 4 C -0.149 4.149 5 C -0.198 4.198 6 N -0.592 5.592 7 C 0.225 3.775 8 C -0.529 4.529 9 H 0.031 0.969 10 C 0.019 3.981 11 N -0.940 5.940 12 Si 0.936 3.064 13 H -0.279 1.279 14 H -0.274 1.274 15 H -0.238 1.238 16 C 0.563 3.437 17 O -0.575 6.575 18 C -0.103 4.103 19 C -0.123 4.123 20 C 0.083 3.917 21 N -0.471 5.471 22 C 0.093 3.907 23 S -0.109 6.109 24 C -0.115 4.115 25 C -0.117 4.117 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.124 0.876 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.122 0.878 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.012 0.988 39 H 0.268 0.732 40 H 0.205 0.795 41 H 0.214 0.786 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.126 0.874 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -18.573 -11.387 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.071 3.929 4 C -0.206 4.206 5 C -0.254 4.254 6 N -0.324 5.324 7 C 0.103 3.897 8 C -0.567 4.567 9 H 0.050 0.950 10 C -0.179 4.179 11 N -0.580 5.580 12 Si 0.759 3.241 13 H -0.205 1.205 14 H -0.199 1.199 15 H -0.161 1.161 16 C 0.352 3.648 17 O -0.455 6.455 18 C -0.115 4.115 19 C -0.144 4.144 20 C -0.076 4.076 21 N -0.184 5.184 22 C -0.156 4.156 23 S 0.129 5.871 24 C -0.284 4.284 25 C -0.144 4.144 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.142 0.858 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.030 0.970 39 H 0.077 0.923 40 H 0.221 0.779 41 H 0.230 0.770 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.145 0.855 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.438 -18.232 -10.204 21.359 hybrid contribution -1.442 1.023 0.590 1.864 sum 2.996 -17.208 -9.614 19.938 Atomic orbital electron populations 1.21905 0.94050 1.02559 1.02211 1.22434 0.98422 0.93531 1.03596 1.20937 0.96248 0.95814 0.79917 1.22272 0.97568 0.98885 1.01829 1.23865 0.97161 1.04048 1.00287 1.47871 1.34659 1.34868 1.14983 1.19441 0.92938 0.84063 0.93257 1.21455 1.10048 0.91170 1.34067 0.95045 1.25700 1.00853 0.94712 0.96684 1.70032 1.41876 0.98849 1.47272 0.85883 0.79970 0.79095 0.79115 1.20500 1.19922 1.16108 1.18505 0.82650 0.77421 0.86270 1.90674 1.79249 1.58925 1.16670 1.20292 0.93041 1.00658 0.97510 1.23956 1.05811 0.92785 0.91894 1.23331 0.85708 0.97615 1.00944 1.67861 1.26491 1.14428 1.09653 1.22771 0.98169 0.99333 0.95289 1.85723 0.94978 1.70485 1.35919 1.23500 1.01669 1.03151 1.00038 1.21577 0.91754 1.00524 1.00500 0.90109 0.90967 0.94837 0.85805 0.92651 0.93634 0.87951 0.91757 0.91542 0.85972 0.92384 0.92266 0.96956 0.92277 0.77878 0.76998 0.89064 0.89407 0.85525 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.58 71.98 0.62 -2.20 16 2 C -0.14 -2.88 4.18 30.59 0.13 -2.75 16 3 C 0.15 4.44 0.95 3.60 0.00 4.44 16 4 C -0.15 -4.23 5.70 71.98 0.41 -3.82 16 5 C -0.20 -5.05 7.32 71.98 0.53 -4.52 16 6 N -0.59 -24.12 2.40 -782.08 -1.87 -26.00 16 7 C 0.22 10.83 3.79 85.63 0.32 11.15 16 8 C -0.53 -30.24 9.01 25.60 0.23 -30.01 16 9 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 10 C 0.02 1.11 5.47 84.66 0.46 1.57 16 11 N -0.94 -58.46 13.96 21.45 0.30 -58.16 16 12 Si 0.94 43.89 27.47 68.60 1.88 45.78 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 15 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 16 C 0.56 24.44 6.05 86.88 0.53 24.96 16 17 O -0.58 -29.70 16.75 -3.78 -0.06 -29.76 16 18 C -0.10 -3.62 4.15 -19.90 -0.08 -3.70 16 19 C -0.12 -2.97 4.76 22.64 0.11 -2.86 16 20 C 0.08 1.69 10.95 84.61 0.93 2.61 16 21 N -0.47 -12.14 9.40 -192.37 -1.81 -13.95 16 22 C 0.09 2.85 7.00 84.84 0.59 3.44 16 23 S -0.11 -2.86 22.55 -56.49 -1.27 -4.14 16 24 C -0.12 -1.96 10.01 113.37 1.14 -0.83 16 25 C -0.12 -4.27 9.52 22.79 0.22 -4.06 16 26 H 0.08 1.25 6.45 -2.39 -0.02 1.24 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.03 0.81 7.62 -2.39 -0.02 0.79 16 29 H 0.12 1.36 6.54 -2.39 -0.02 1.35 16 30 H 0.05 1.34 6.57 -2.38 -0.02 1.32 16 31 H 0.04 1.68 7.08 -2.38 -0.02 1.66 16 32 H 0.10 2.01 7.62 -2.39 -0.02 1.99 16 33 H 0.06 1.85 5.02 -2.39 -0.01 1.84 16 34 H 0.07 2.14 3.79 -16.03 -0.06 2.08 16 35 H 0.12 1.82 5.25 -2.39 -0.01 1.81 16 36 H 0.06 1.58 7.65 -2.39 -0.02 1.56 16 37 H 0.06 2.62 4.86 -2.39 -0.01 2.60 16 38 H 0.01 0.66 6.76 -2.39 -0.02 0.64 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.21 3.79 1.34 -2.97 0.00 3.79 16 41 H 0.21 2.07 8.06 -2.91 -0.02 2.04 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -78.87 352.32 4.20 -74.67 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.91 Total: 18.14 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 6.13 Total: -6.57 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -3.38 Total: -98.11 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.06 Total: -29.76 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -1.27 Total: -4.14 kcal Total: -78.87 4.20 -74.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189915988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.860 kcal (2) G-P(sol) polarization free energy of solvation -78.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds