Wall clock time and date at job start Tue Mar 31 2020 13:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47385 * 2 1 4 4 C 1.53001 * 109.47138 * 303.20655 * 3 2 1 5 5 C 1.52998 * 109.47394 * 183.20540 * 3 2 1 6 6 N 1.46504 * 109.47100 * 63.20678 * 3 2 1 7 7 C 1.46506 * 119.99819 * 243.06695 * 6 3 2 8 8 C 1.50701 * 109.46959 * 96.56567 * 7 6 3 9 9 H 1.07992 * 120.00240 * 357.19271 * 8 7 6 10 10 C 1.37874 * 119.99580 * 177.18981 * 8 7 6 11 11 N 1.31512 * 120.00405 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99754 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47138 * 60.00119 * 12 10 8 14 14 H 1.48505 * 109.47206 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47048 * 300.00023 * 12 10 8 16 16 C 1.34770 * 119.99900 * 63.06710 * 6 3 2 17 17 O 1.21775 * 119.99823 * 176.27362 * 16 6 3 18 18 C 1.41540 * 120.00412 * 356.26919 * 16 6 3 19 19 C 1.35556 * 120.00374 * 182.79368 * 18 16 6 20 20 C 1.41731 * 120.00138 * 180.02562 * 19 18 16 21 21 S 1.76209 * 126.18994 * 0.02562 * 20 19 18 22 22 C 1.70914 * 90.39113 * 180.02562 * 21 20 19 23 23 N 1.29357 * 110.64798 * 0.02562 * 22 21 20 24 24 C 1.30957 * 117.49486 * 359.70215 * 23 22 21 25 25 C 1.50697 * 123.07643 * 180.34541 * 24 23 22 26 26 H 1.08996 * 109.47135 * 175.43943 * 1 2 3 27 27 H 1.09002 * 109.46939 * 295.44140 * 1 2 3 28 28 H 1.09003 * 109.47262 * 55.43858 * 1 2 3 29 29 H 1.08999 * 109.46654 * 239.99942 * 2 1 3 30 30 H 1.09003 * 109.46924 * 120.00398 * 2 1 3 31 31 H 1.08997 * 109.47364 * 186.07732 * 4 3 2 32 32 H 1.08997 * 109.47032 * 306.07920 * 4 3 2 33 33 H 1.09004 * 109.47041 * 66.08360 * 4 3 2 34 34 H 1.09001 * 109.46893 * 302.85415 * 5 3 2 35 35 H 1.08997 * 109.46895 * 62.85157 * 5 3 2 36 36 H 1.08998 * 109.47491 * 182.85184 * 5 3 2 37 37 H 1.09003 * 109.46801 * 216.56462 * 7 6 3 38 38 H 1.08999 * 109.47239 * 336.56100 * 7 6 3 39 39 H 0.97005 * 120.00325 * 180.02562 * 11 10 8 40 40 H 1.08003 * 120.00026 * 2.79620 * 18 16 6 41 41 H 1.08000 * 120.00359 * 359.97438 * 19 18 16 42 42 H 1.08005 * 124.67743 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47540 * 270.20003 * 25 24 23 44 44 H 1.08999 * 109.47495 * 30.20040 * 25 24 23 45 45 H 1.09007 * 109.47050 * 150.19332 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4653 2.1866 -1.2069 5 6 3.5679 1.4432 -0.0807 6 7 1.6159 2.1104 1.2330 7 6 0.7138 3.2630 1.1685 8 6 -0.7039 2.8047 1.3947 9 1 -0.9176 1.7540 1.5238 10 6 -1.7280 3.7268 1.4368 11 7 -1.4677 5.0063 1.2801 12 14 -3.4854 3.1586 1.7163 13 1 -3.5777 2.4600 3.0235 14 1 -4.3915 4.3352 1.7195 15 1 -3.8840 2.2291 0.6290 16 6 2.0554 1.6645 2.4264 17 8 1.7579 2.2602 3.4460 18 6 2.8627 0.5039 2.4948 19 6 3.2578 0.0230 3.6990 20 6 4.0666 -1.1388 3.7674 21 16 4.6508 -2.0819 2.3983 22 6 5.4480 -3.1554 3.4629 23 7 5.2628 -2.7995 4.6927 24 6 4.5396 -1.7296 4.9102 25 6 4.2508 -1.1987 6.2906 26 1 -0.3633 -1.0244 -0.0817 27 1 -0.3633 0.4415 0.9280 28 1 -0.3634 0.5830 -0.8463 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9116 3.1791 -1.2682 32 1 1.6896 1.6306 -2.1172 33 1 0.3850 2.2804 -1.0953 34 1 3.9760 0.8698 0.7518 35 1 3.8823 0.9916 -1.0215 36 1 3.9340 2.4686 -0.0296 37 1 0.9898 3.9838 1.9382 38 1 0.7922 3.7314 0.1874 39 1 -2.1882 5.6552 1.3101 40 1 3.1639 0.0014 1.5874 41 1 2.9570 0.5256 4.6063 42 1 6.0266 -4.0127 3.1518 43 1 3.3371 -1.6547 6.6716 44 1 5.0813 -1.4402 6.9540 45 1 4.1253 -0.1168 6.2449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189944703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:31 Heat of formation + Delta-G solvation = 43.087904 kcal Electronic energy + Delta-G solvation = -25981.585145 eV Core-core repulsion = 22513.404765 eV Total energy + Delta-G solvation = -3468.180380 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.20391 -39.84007 -36.91583 -34.64599 -33.09170 -31.71681 -31.36121 -29.97901 -28.94257 -27.01496 -26.34163 -25.18724 -23.33399 -23.13381 -21.88718 -20.19621 -19.38151 -18.13688 -17.72693 -16.71984 -16.13417 -15.46667 -15.25498 -15.09820 -14.58899 -14.41215 -14.04668 -13.87278 -13.74774 -13.26619 -13.18356 -12.83119 -12.72777 -12.67416 -12.26820 -12.22695 -11.96766 -11.76921 -11.47965 -11.37134 -11.16821 -11.03330 -10.89344 -10.78046 -10.59075 -10.50149 -10.38988 -10.02339 -9.91750 -9.78969 -9.30071 -9.22791 -8.96925 -8.37922 -8.17182 -7.53764 -6.00256 -4.03559 -0.05365 1.13597 1.52414 1.82873 2.75311 3.32860 3.37789 3.40794 3.90535 4.02577 4.08155 4.47387 4.79312 4.88207 4.96407 4.98738 5.17235 5.28642 5.33978 5.36047 5.48279 5.51367 5.59210 5.62784 5.70048 5.83788 5.89223 6.01916 6.05727 6.11018 6.15189 6.22254 6.30229 6.34000 6.41677 6.52955 6.58519 6.82445 6.98377 7.15818 7.50527 7.53512 7.65396 7.99844 8.28284 8.47003 8.95914 9.13783 9.60749 11.07704 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.003918 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.861494 B = 7144.834637 C = 7871.732175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C 0.164 3.836 4 C -0.150 4.150 5 C -0.176 4.176 6 N -0.578 5.578 7 C 0.240 3.760 8 C -0.521 4.521 9 H 0.067 0.933 10 C 0.062 3.938 11 N -0.895 5.895 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.538 3.462 17 O -0.543 6.543 18 C -0.196 4.196 19 C -0.023 4.023 20 C -0.197 4.197 21 S 0.145 5.855 22 C 0.006 3.994 23 N -0.467 5.467 24 C 0.083 3.917 25 C -0.082 4.082 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.262 0.738 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.199 0.801 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.472 -14.490 -1.719 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.177 4.177 3 C 0.078 3.922 4 C -0.207 4.207 5 C -0.234 4.234 6 N -0.309 5.309 7 C 0.121 3.879 8 C -0.560 4.560 9 H 0.085 0.915 10 C -0.140 4.140 11 N -0.535 5.535 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.328 3.672 17 O -0.423 6.423 18 C -0.219 4.219 19 C -0.045 4.045 20 C -0.317 4.317 21 S 0.402 5.598 22 C -0.288 4.288 23 N -0.181 5.181 24 C -0.054 4.054 25 C -0.141 4.141 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.216 0.784 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.411 -14.308 -1.948 19.707 hybrid contribution -1.128 -0.128 0.751 1.362 sum 12.283 -14.436 -1.196 18.992 Atomic orbital electron populations 1.22070 0.94485 1.00172 1.05041 1.22260 0.98138 0.95748 1.01528 1.20372 0.92838 0.92531 0.86457 1.22115 1.04017 0.99556 0.95013 1.22689 0.95679 1.02894 1.02096 1.48289 1.46489 1.32420 1.03736 1.19389 0.87263 0.82853 0.98396 1.21575 0.91410 0.93856 1.49146 0.91521 1.24899 0.98960 0.94769 0.95322 1.69921 1.32614 1.00689 1.50227 0.86673 0.84535 0.78064 0.78857 1.20269 1.21302 1.20252 1.16678 0.81291 0.84990 0.84285 1.90805 1.58901 1.58804 1.33820 1.23233 1.01110 0.99269 0.98312 1.20555 0.92965 0.91239 0.99758 1.23752 1.09062 1.03673 0.95262 1.83969 1.44116 1.20297 1.11454 1.28404 1.04638 1.04732 0.91049 1.65880 1.16464 1.14819 1.20892 1.21071 0.96065 0.91541 0.96680 1.20429 1.02770 1.01341 0.89608 0.94323 0.89840 0.91995 0.91849 0.91597 0.92262 0.92658 0.89306 0.91661 0.91730 0.91898 0.94295 0.94056 0.92816 0.84019 0.83337 0.78421 0.90149 0.90397 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.13 37.16 0.34 -2.34 16 2 C -0.14 -2.02 4.68 -26.73 -0.13 -2.14 16 3 C 0.16 2.63 0.73 -131.82 -0.10 2.54 16 4 C -0.15 -2.38 6.51 37.16 0.24 -2.14 16 5 C -0.18 -2.33 8.21 37.16 0.30 -2.02 16 6 N -0.58 -11.91 1.91 -163.57 -0.31 -12.22 16 7 C 0.24 6.02 4.45 -5.19 -0.02 6.00 16 8 C -0.52 -14.04 8.56 -34.44 -0.29 -14.34 16 9 H 0.07 1.78 4.82 -52.49 -0.25 1.52 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 12 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.54 11.30 6.95 -15.00 -0.10 11.20 16 17 O -0.54 -13.69 15.77 5.12 0.08 -13.61 16 18 C -0.20 -3.19 6.10 -39.28 -0.24 -3.42 16 19 C -0.02 -0.34 8.96 -39.21 -0.35 -0.69 16 20 C -0.20 -2.52 6.26 -38.67 -0.24 -2.76 16 21 S 0.15 1.46 21.97 -107.50 -2.36 -0.90 16 22 C 0.01 0.06 12.20 51.72 0.63 0.69 16 23 N -0.47 -5.66 10.49 -11.23 -0.12 -5.78 16 24 C 0.08 1.02 6.85 -83.39 -0.57 0.45 16 25 C -0.08 -0.84 10.04 36.00 0.36 -0.48 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.70 4.59 -51.93 -0.24 1.46 16 28 H 0.06 1.04 6.26 -51.93 -0.32 0.72 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.95 4.73 -51.93 -0.25 0.70 16 31 H 0.06 0.96 7.45 -51.93 -0.39 0.57 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.66 5.47 -51.93 -0.28 1.38 16 34 H 0.06 0.84 4.53 -51.93 -0.24 0.60 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.04 1.13 7.57 -51.93 -0.39 0.74 16 38 H 0.04 1.03 5.52 -51.93 -0.29 0.74 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.14 1.98 2.32 -52.48 -0.12 1.85 16 41 H 0.15 2.30 6.53 -52.49 -0.34 1.96 16 42 H 0.20 1.14 8.06 -52.48 -0.42 0.72 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.80 7.10 -51.93 -0.37 0.43 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -32.44 359.62 -7.84 -40.28 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.00 Total: 3.47 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.27 Total: -7.84 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.31 Total: -43.35 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.36 Total: -0.90 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.44 -7.84 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189944703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.364 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds