Wall clock time and date at job start Tue Mar 31 2020 13:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47385 * 2 1 4 4 C 1.53001 * 109.47138 * 303.20655 * 3 2 1 5 5 C 1.52998 * 109.47394 * 183.20540 * 3 2 1 6 6 N 1.46504 * 109.47100 * 63.20678 * 3 2 1 7 7 C 1.46506 * 119.99819 * 243.06695 * 6 3 2 8 8 C 1.50701 * 109.46959 * 96.56567 * 7 6 3 9 9 H 1.07992 * 120.00240 * 357.19271 * 8 7 6 10 10 C 1.37874 * 119.99580 * 177.18981 * 8 7 6 11 11 N 1.31512 * 120.00405 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99754 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47138 * 60.00119 * 12 10 8 14 14 H 1.48505 * 109.47206 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47048 * 300.00023 * 12 10 8 16 16 C 1.34770 * 119.99900 * 63.06710 * 6 3 2 17 17 O 1.21775 * 119.99823 * 176.27362 * 16 6 3 18 18 C 1.41540 * 120.00412 * 356.26919 * 16 6 3 19 19 C 1.35556 * 120.00374 * 182.79368 * 18 16 6 20 20 C 1.41731 * 120.00138 * 180.02562 * 19 18 16 21 21 S 1.76209 * 126.18994 * 0.02562 * 20 19 18 22 22 C 1.70914 * 90.39113 * 180.02562 * 21 20 19 23 23 N 1.29357 * 110.64798 * 0.02562 * 22 21 20 24 24 C 1.30957 * 117.49486 * 359.70215 * 23 22 21 25 25 C 1.50697 * 123.07643 * 180.34541 * 24 23 22 26 26 H 1.08996 * 109.47135 * 175.43943 * 1 2 3 27 27 H 1.09002 * 109.46939 * 295.44140 * 1 2 3 28 28 H 1.09003 * 109.47262 * 55.43858 * 1 2 3 29 29 H 1.08999 * 109.46654 * 239.99942 * 2 1 3 30 30 H 1.09003 * 109.46924 * 120.00398 * 2 1 3 31 31 H 1.08997 * 109.47364 * 186.07732 * 4 3 2 32 32 H 1.08997 * 109.47032 * 306.07920 * 4 3 2 33 33 H 1.09004 * 109.47041 * 66.08360 * 4 3 2 34 34 H 1.09001 * 109.46893 * 302.85415 * 5 3 2 35 35 H 1.08997 * 109.46895 * 62.85157 * 5 3 2 36 36 H 1.08998 * 109.47491 * 182.85184 * 5 3 2 37 37 H 1.09003 * 109.46801 * 216.56462 * 7 6 3 38 38 H 1.08999 * 109.47239 * 336.56100 * 7 6 3 39 39 H 0.97005 * 120.00325 * 180.02562 * 11 10 8 40 40 H 1.08003 * 120.00026 * 2.79620 * 18 16 6 41 41 H 1.08000 * 120.00359 * 359.97438 * 19 18 16 42 42 H 1.08005 * 124.67743 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47540 * 270.20003 * 25 24 23 44 44 H 1.08999 * 109.47495 * 30.20040 * 25 24 23 45 45 H 1.09007 * 109.47050 * 150.19332 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4653 2.1866 -1.2069 5 6 3.5679 1.4432 -0.0807 6 7 1.6159 2.1104 1.2330 7 6 0.7138 3.2630 1.1685 8 6 -0.7039 2.8047 1.3947 9 1 -0.9176 1.7540 1.5238 10 6 -1.7280 3.7268 1.4368 11 7 -1.4677 5.0063 1.2801 12 14 -3.4854 3.1586 1.7163 13 1 -3.5777 2.4600 3.0235 14 1 -4.3915 4.3352 1.7195 15 1 -3.8840 2.2291 0.6290 16 6 2.0554 1.6645 2.4264 17 8 1.7579 2.2602 3.4460 18 6 2.8627 0.5039 2.4948 19 6 3.2578 0.0230 3.6990 20 6 4.0666 -1.1388 3.7674 21 16 4.6508 -2.0819 2.3983 22 6 5.4480 -3.1554 3.4629 23 7 5.2628 -2.7995 4.6927 24 6 4.5396 -1.7296 4.9102 25 6 4.2508 -1.1987 6.2906 26 1 -0.3633 -1.0244 -0.0817 27 1 -0.3633 0.4415 0.9280 28 1 -0.3634 0.5830 -0.8463 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9116 3.1791 -1.2682 32 1 1.6896 1.6306 -2.1172 33 1 0.3850 2.2804 -1.0953 34 1 3.9760 0.8698 0.7518 35 1 3.8823 0.9916 -1.0215 36 1 3.9340 2.4686 -0.0296 37 1 0.9898 3.9838 1.9382 38 1 0.7922 3.7314 0.1874 39 1 -2.1882 5.6552 1.3101 40 1 3.1639 0.0014 1.5874 41 1 2.9570 0.5256 4.6063 42 1 6.0266 -4.0127 3.1518 43 1 3.3371 -1.6547 6.6716 44 1 5.0813 -1.4402 6.9540 45 1 4.1253 -0.1168 6.2449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189944703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:30 Heat of formation + Delta-G solvation = 23.162073 kcal Electronic energy + Delta-G solvation = -25982.449194 eV Core-core repulsion = 22513.404765 eV Total energy + Delta-G solvation = -3469.044429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60618 -40.82270 -38.41817 -35.93908 -34.96873 -33.38003 -32.38828 -31.29086 -30.33358 -28.28282 -27.84402 -26.06406 -24.97747 -24.38981 -23.40971 -21.51365 -20.41521 -19.36436 -18.76754 -18.67294 -17.46528 -17.01380 -16.48571 -16.25753 -16.06127 -15.96070 -15.42405 -15.29549 -14.74932 -14.50408 -14.36264 -14.24631 -14.08160 -13.71496 -13.53812 -13.50037 -13.23501 -13.05366 -12.91469 -12.86236 -12.68293 -12.45527 -12.27329 -12.18993 -12.05122 -11.94329 -11.86926 -11.73686 -11.17626 -11.00601 -10.86233 -10.57916 -10.53900 -10.04508 -9.44273 -9.06643 -8.13721 -6.24621 -1.03308 0.30331 0.69087 0.72990 1.36196 1.40103 1.46392 1.78975 2.31629 2.50468 2.58821 3.15876 3.24768 3.70405 3.78672 3.91351 4.01523 4.05949 4.14195 4.21394 4.40727 4.48959 4.65205 4.68165 4.69118 4.77334 4.80265 4.84785 4.88243 4.93450 5.04848 5.09346 5.12430 5.20837 5.23144 5.28279 5.29467 5.36216 5.40608 5.45682 5.64003 5.85760 5.98633 6.19554 6.64925 6.80142 6.91707 7.37466 7.55440 8.93028 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.003918 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.861494 B = 7144.834637 C = 7871.732175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.134 4.134 3 C 0.153 3.847 4 C -0.146 4.146 5 C -0.170 4.170 6 N -0.582 5.582 7 C 0.257 3.743 8 C -0.524 4.524 9 H 0.069 0.931 10 C 0.008 3.992 11 N -0.932 5.932 12 Si 0.953 3.047 13 H -0.282 1.282 14 H -0.283 1.283 15 H -0.259 1.259 16 C 0.532 3.468 17 O -0.607 6.607 18 C -0.225 4.225 19 C 0.012 3.988 20 C -0.247 4.247 21 S 0.194 5.806 22 C 0.029 3.971 23 N -0.498 5.498 24 C 0.096 3.904 25 C -0.088 4.088 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.048 0.952 37 H -0.015 1.015 38 H 0.039 0.961 39 H 0.263 0.737 40 H 0.170 0.830 41 H 0.131 0.869 42 H 0.240 0.760 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.214 -18.549 -3.333 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.171 4.171 3 C 0.069 3.931 4 C -0.203 4.203 5 C -0.228 4.228 6 N -0.311 5.311 7 C 0.136 3.864 8 C -0.562 4.562 9 H 0.087 0.913 10 C -0.190 4.190 11 N -0.572 5.572 12 Si 0.778 3.222 13 H -0.208 1.208 14 H -0.208 1.208 15 H -0.184 1.184 16 C 0.325 3.675 17 O -0.492 6.492 18 C -0.247 4.247 19 C -0.010 4.010 20 C -0.368 4.368 21 S 0.451 5.549 22 C -0.264 4.264 23 N -0.212 5.212 24 C -0.042 4.042 25 C -0.147 4.147 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.003 0.997 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.187 0.813 41 H 0.149 0.851 42 H 0.257 0.743 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.168 -18.396 -3.626 24.117 hybrid contribution -1.499 0.960 1.322 2.217 sum 13.670 -17.436 -2.304 22.275 Atomic orbital electron populations 1.21981 0.96350 1.00948 1.02287 1.22263 0.96391 0.94689 1.03787 1.20818 0.95045 0.93177 0.84105 1.22070 1.01600 0.99787 0.96867 1.22640 0.92898 1.02740 1.04481 1.48273 1.45627 1.31438 1.05776 1.18838 0.87717 0.83758 0.96058 1.21898 0.92356 0.94009 1.47971 0.91339 1.25736 1.03113 0.94858 0.95324 1.70054 1.33735 1.01780 1.51677 0.85686 0.79802 0.77895 0.78771 1.20790 1.20799 1.18386 1.17402 0.81004 0.85741 0.83358 1.90757 1.61633 1.61012 1.35795 1.22863 1.03293 0.98695 0.99888 1.20516 0.90871 0.90929 0.98689 1.23640 1.11325 1.04465 0.97389 1.83757 1.42806 1.18815 1.09522 1.29252 1.02326 1.04579 0.90292 1.66006 1.17759 1.15205 1.22235 1.21398 0.94498 0.91055 0.97208 1.20533 1.03581 1.01260 0.89334 0.92039 0.94212 0.92670 0.87488 0.91154 0.93473 0.88550 0.92683 0.91025 0.87719 0.93232 0.99731 0.94332 0.92859 0.81349 0.85149 0.74349 0.89423 0.89216 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 9.13 71.98 0.66 -4.46 16 2 C -0.13 -3.53 4.68 30.59 0.14 -3.38 16 3 C 0.15 4.75 0.73 3.60 0.00 4.75 16 4 C -0.15 -4.55 6.51 71.98 0.47 -4.08 16 5 C -0.17 -4.08 8.21 71.98 0.59 -3.49 16 6 N -0.58 -25.04 1.91 -789.60 -1.50 -26.54 16 7 C 0.26 13.87 4.45 85.63 0.38 14.26 16 8 C -0.52 -29.75 8.56 25.60 0.22 -29.53 16 9 H 0.07 3.82 4.82 -2.91 -0.01 3.81 16 10 C 0.01 0.45 5.46 84.65 0.46 0.91 16 11 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 12 Si 0.95 45.59 29.54 68.60 2.03 47.61 16 13 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 15 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 16 C 0.53 23.55 6.95 85.06 0.59 24.15 16 17 O -0.61 -33.12 15.77 -4.59 -0.07 -33.20 16 18 C -0.23 -7.31 6.10 22.46 0.14 -7.18 16 19 C 0.01 0.37 8.96 22.51 0.20 0.57 16 20 C -0.25 -5.90 6.26 22.86 0.14 -5.76 16 21 S 0.19 3.12 21.97 -56.49 -1.24 1.87 16 22 C 0.03 0.42 12.20 130.61 1.59 2.01 16 23 N -0.50 -10.45 10.49 -189.44 -1.99 -12.44 16 24 C 0.10 2.19 6.85 42.41 0.29 2.48 16 25 C -0.09 -1.72 10.04 71.24 0.72 -1.01 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.63 4.59 -2.39 -0.01 1.62 16 28 H 0.05 1.82 6.26 -2.39 -0.01 1.80 16 29 H 0.11 1.95 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.83 4.73 -2.39 -0.01 1.82 16 31 H 0.05 1.54 7.45 -2.39 -0.02 1.53 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 2.09 5.47 -2.38 -0.01 2.08 16 34 H 0.07 1.65 4.53 -2.39 -0.01 1.63 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 37 H -0.02 -0.98 7.57 -2.39 -0.02 -1.00 16 38 H 0.04 2.07 5.52 -2.39 -0.01 2.06 16 39 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 40 H 0.17 4.35 2.32 -2.91 -0.01 4.35 16 41 H 0.13 4.29 6.53 -2.91 -0.02 4.27 16 42 H 0.24 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.57 7.10 -2.38 -0.02 1.56 16 Total: -1.00 -77.54 359.62 5.13 -72.41 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.02 Total: 16.74 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 6.60 Total: -9.76 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -3.21 Total: -95.68 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.07 Total: -33.20 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.24 Total: 1.87 kcal Total: -77.54 5.13 -72.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189944703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.576 kcal (2) G-P(sol) polarization free energy of solvation -77.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds