Wall clock time and date at job start Tue Mar 31 2020 13:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47077 * 2 1 4 4 C 1.52995 * 109.47150 * 119.99972 * 2 1 3 5 5 C 1.50698 * 109.47192 * 239.99919 * 2 1 3 6 6 N 1.29361 * 124.66874 * 59.69518 * 5 2 1 7 7 C 1.30962 * 117.48644 * 179.83556 * 6 5 2 8 8 C 1.37063 * 113.84950 * 0.44669 * 7 6 5 9 9 C 1.41730 * 126.19421 * 179.74682 * 8 7 6 10 10 C 1.35560 * 120.00229 * 131.93066 * 9 8 7 11 11 C 1.41545 * 119.99980 * 345.30129 * 10 9 8 12 12 O 1.21775 * 120.00131 * 353.34463 * 11 10 9 13 13 N 1.34779 * 120.00035 * 173.34187 * 11 10 9 14 14 C 1.46503 * 120.00010 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47057 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.46961 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47248 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99976 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00533 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00521 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99804 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46583 * 90.00397 * 21 19 17 23 23 H 1.48501 * 109.47091 * 209.99743 * 21 19 17 24 24 H 1.48496 * 109.47011 * 330.00355 * 21 19 17 25 25 S 1.70906 * 124.67751 * 239.99957 * 5 2 1 26 26 H 1.09001 * 109.47221 * 59.99946 * 1 2 3 27 27 H 1.09004 * 109.47391 * 299.99936 * 1 2 3 28 28 H 1.09001 * 109.47356 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46664 * 60.00020 * 3 2 1 30 30 H 1.09000 * 109.46733 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47139 * 300.00104 * 3 2 1 32 32 H 1.09001 * 109.46955 * 59.99799 * 4 2 1 33 33 H 1.08997 * 109.47157 * 180.02562 * 4 2 1 34 34 H 1.09007 * 109.47381 * 299.99894 * 4 2 1 35 35 H 1.07998 * 123.07371 * 180.21878 * 7 6 5 36 36 H 1.07997 * 120.00065 * 311.93533 * 9 8 7 37 37 H 1.07995 * 120.00225 * 165.29622 * 10 9 8 38 38 H 0.96997 * 120.00147 * 0.02562 * 13 11 10 39 39 H 1.09002 * 109.46780 * 300.00131 * 14 13 11 40 40 H 1.08993 * 109.47086 * 60.00220 * 14 13 11 41 41 H 1.09001 * 109.46724 * 299.99892 * 15 14 13 42 42 H 1.08993 * 109.47283 * 59.99986 * 15 14 13 43 43 H 1.09001 * 109.47260 * 299.99499 * 16 15 14 44 44 H 1.09004 * 109.47473 * 60.00322 * 16 15 14 45 45 H 0.97001 * 120.00114 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0323 -0.7104 -1.2304 6 7 1.7715 -0.3513 -2.4455 7 6 2.2852 -1.0705 -3.4119 8 6 3.0354 -2.1310 -2.9748 9 6 3.7032 -3.0771 -3.7919 10 6 4.9974 -3.3944 -3.5427 11 6 5.7741 -2.5775 -2.6865 12 8 5.3203 -1.5267 -2.2707 13 7 7.0159 -2.9627 -2.3314 14 6 7.8200 -2.1169 -1.4458 15 6 9.1777 -2.7790 -1.2026 16 6 10.0172 -1.8960 -0.2772 17 6 11.3543 -2.5483 -0.0372 18 1 11.5824 -3.4980 -0.4983 19 6 12.2865 -1.9330 0.7710 20 7 13.4536 -2.5020 0.9800 21 14 11.8924 -0.2900 1.5680 22 1 11.2625 -0.5211 2.8928 23 1 13.1451 0.4877 1.7444 24 1 10.9564 0.4691 0.7004 25 16 3.0190 -2.1058 -1.2129 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 -1.7489 1.2492 33 1 3.1299 -0.7208 1.2494 34 1 1.6766 -0.2074 2.1393 35 1 2.1288 -0.8504 -4.4576 36 1 3.1811 -3.5452 -4.6132 37 1 5.4358 -4.2704 -3.9972 38 1 7.3775 -3.7994 -2.6629 39 1 7.9693 -1.1425 -1.9109 40 1 7.3018 -1.9902 -0.4953 41 1 9.0286 -3.7535 -0.7377 42 1 9.6958 -2.9053 -2.1532 43 1 10.1663 -0.9213 -0.7417 44 1 9.4990 -1.7701 0.6735 45 1 14.1093 -2.0692 1.5489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255081361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:54 Heat of formation + Delta-G solvation = 8.104481 kcal Electronic energy + Delta-G solvation = -24243.979310 eV Core-core repulsion = 20774.281935 eV Total energy + Delta-G solvation = -3469.697375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.13735 -39.59369 -36.98772 -35.67947 -34.03520 -33.33012 -31.52569 -29.26652 -27.69123 -27.48826 -27.29939 -25.66834 -23.67846 -22.01530 -21.25340 -20.70111 -19.88107 -18.79032 -17.64027 -17.04088 -16.79115 -15.82295 -15.51523 -15.21186 -15.06244 -14.55225 -14.35469 -14.24611 -13.98069 -13.95050 -13.50371 -13.44208 -12.87579 -12.70558 -12.48291 -12.42119 -12.06629 -11.93752 -11.92822 -11.74504 -11.52632 -11.28201 -11.19526 -11.09174 -10.91213 -10.45697 -10.11178 -9.95013 -9.79908 -9.64193 -9.51396 -9.24378 -9.04639 -8.57127 -8.48422 -8.32964 -6.07823 -4.06589 0.08044 1.22870 1.56097 1.89924 2.82888 3.29768 3.37407 3.38678 3.41853 3.50600 3.91883 4.42980 4.52284 4.65180 4.70200 4.81554 4.86131 5.12806 5.24613 5.25001 5.26272 5.30165 5.38319 5.48846 5.53149 5.61357 5.64727 5.64914 5.69570 5.81331 5.86571 5.92280 6.00453 6.01793 6.07703 6.23068 6.35278 6.43483 6.70254 6.78501 7.21103 7.34663 7.65018 7.75280 7.75549 8.33545 8.48887 8.95935 9.54489 11.05419 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.002832 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.900754 B = 9884.366006 C =11325.089645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.011 3.989 3 C -0.134 4.134 4 C -0.157 4.157 5 C 0.038 3.962 6 N -0.477 5.477 7 C 0.065 3.935 8 C -0.220 4.220 9 C 0.013 3.987 10 C -0.210 4.210 11 C 0.528 3.472 12 O -0.536 6.536 13 N -0.720 5.720 14 C 0.115 3.885 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.067 3.933 20 N -0.903 5.903 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 S 0.215 5.785 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.172 0.828 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.399 0.601 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.018 0.982 44 H 0.014 0.986 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.725 -0.405 -6.438 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.007 3.993 3 C -0.192 4.192 4 C -0.215 4.215 5 C -0.236 4.236 6 N -0.191 5.191 7 C -0.092 4.092 8 C -0.342 4.342 9 C -0.009 4.009 10 C -0.235 4.235 11 C 0.318 3.682 12 O -0.417 6.417 13 N -0.371 5.371 14 C -0.008 4.008 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 S 0.477 5.523 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.189 0.811 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.032 0.968 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.759 0.228 -5.237 28.250 hybrid contribution 0.339 0.550 -0.855 1.072 sum -27.420 0.778 -6.092 28.099 Atomic orbital electron populations 1.21825 0.92518 1.02114 1.02620 1.19200 0.96319 0.95317 0.88477 1.21830 1.01577 0.93389 1.02453 1.22048 1.02149 1.00460 0.96803 1.27112 1.00858 0.99055 0.96540 1.65778 1.24194 1.30540 0.98566 1.22240 0.96083 0.91537 0.99340 1.23721 1.08315 1.04491 0.97633 1.20541 0.93281 0.92387 0.94682 1.22325 0.95509 1.01806 1.03853 1.17199 0.82371 0.87087 0.81570 1.90935 1.70845 1.24627 1.55249 1.46158 1.15743 1.25044 1.50111 1.21614 0.91931 0.94100 0.93112 1.21701 0.92531 0.99890 1.01002 1.19497 0.95522 0.95542 0.94305 1.21097 0.97413 1.07717 1.29782 0.91017 1.25026 0.94842 0.97546 0.96042 1.69911 1.06396 1.39297 1.38590 0.86784 0.77924 0.84475 0.80173 1.20217 1.21340 1.18921 1.83697 1.42390 1.24968 1.01237 0.91545 0.91763 0.92683 0.91785 0.92246 0.91598 0.92005 0.91538 0.90668 0.81133 0.83912 0.84590 0.76701 0.91890 0.91845 0.92149 0.92139 0.96367 0.96789 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 8.45 37.16 0.31 -0.78 16 2 C 0.01 0.11 0.99 -155.66 -0.15 -0.05 16 3 C -0.13 -1.33 8.45 37.16 0.31 -1.02 16 4 C -0.16 -1.36 7.53 37.16 0.28 -1.08 16 5 C 0.04 0.47 5.77 -13.32 -0.08 0.39 16 6 N -0.48 -6.34 10.48 -11.19 -0.12 -6.46 16 7 C 0.06 0.78 11.38 -18.35 -0.21 0.57 16 8 C -0.22 -2.61 4.36 -38.68 -0.17 -2.78 16 9 C 0.01 0.12 9.90 -39.21 -0.39 -0.26 16 10 C -0.21 -2.10 9.80 -39.28 -0.39 -2.49 16 11 C 0.53 7.30 7.11 -15.00 -0.11 7.20 16 12 O -0.54 -9.13 12.38 5.12 0.06 -9.07 16 13 N -0.72 -9.67 5.55 -63.24 -0.35 -10.03 16 14 C 0.12 1.90 5.67 -4.04 -0.02 1.87 16 15 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 16 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 17 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 21 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 25 S 0.21 2.65 18.69 -107.50 -2.01 0.64 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.50 7.91 -51.93 -0.41 0.09 16 33 H 0.07 0.66 7.91 -51.93 -0.41 0.25 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.40 4.27 8.43 -40.82 -0.34 3.93 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 44 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -33.98 382.18 -9.28 -43.26 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.44 Total: -0.02 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.29 Total: -14.21 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.31 Total: -43.43 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.06 Total: -9.07 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.01 Total: 0.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.98 -9.28 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255081361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.363 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds