Wall clock time and date at job start Tue Mar 31 2020 13:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47077 * 2 1 4 4 C 1.52995 * 109.47150 * 119.99972 * 2 1 3 5 5 C 1.50698 * 109.47192 * 239.99919 * 2 1 3 6 6 N 1.29361 * 124.66874 * 59.69518 * 5 2 1 7 7 C 1.30962 * 117.48644 * 179.83556 * 6 5 2 8 8 C 1.37063 * 113.84950 * 0.44669 * 7 6 5 9 9 C 1.41730 * 126.19421 * 179.74682 * 8 7 6 10 10 C 1.35560 * 120.00229 * 131.93066 * 9 8 7 11 11 C 1.41545 * 119.99980 * 345.30129 * 10 9 8 12 12 O 1.21775 * 120.00131 * 353.34463 * 11 10 9 13 13 N 1.34779 * 120.00035 * 173.34187 * 11 10 9 14 14 C 1.46503 * 120.00010 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47057 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.46961 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47248 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99976 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00533 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00521 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99804 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46583 * 90.00397 * 21 19 17 23 23 H 1.48501 * 109.47091 * 209.99743 * 21 19 17 24 24 H 1.48496 * 109.47011 * 330.00355 * 21 19 17 25 25 S 1.70906 * 124.67751 * 239.99957 * 5 2 1 26 26 H 1.09001 * 109.47221 * 59.99946 * 1 2 3 27 27 H 1.09004 * 109.47391 * 299.99936 * 1 2 3 28 28 H 1.09001 * 109.47356 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46664 * 60.00020 * 3 2 1 30 30 H 1.09000 * 109.46733 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47139 * 300.00104 * 3 2 1 32 32 H 1.09001 * 109.46955 * 59.99799 * 4 2 1 33 33 H 1.08997 * 109.47157 * 180.02562 * 4 2 1 34 34 H 1.09007 * 109.47381 * 299.99894 * 4 2 1 35 35 H 1.07998 * 123.07371 * 180.21878 * 7 6 5 36 36 H 1.07997 * 120.00065 * 311.93533 * 9 8 7 37 37 H 1.07995 * 120.00225 * 165.29622 * 10 9 8 38 38 H 0.96997 * 120.00147 * 0.02562 * 13 11 10 39 39 H 1.09002 * 109.46780 * 300.00131 * 14 13 11 40 40 H 1.08993 * 109.47086 * 60.00220 * 14 13 11 41 41 H 1.09001 * 109.46724 * 299.99892 * 15 14 13 42 42 H 1.08993 * 109.47283 * 59.99986 * 15 14 13 43 43 H 1.09001 * 109.47260 * 299.99499 * 16 15 14 44 44 H 1.09004 * 109.47473 * 60.00322 * 16 15 14 45 45 H 0.97001 * 120.00114 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0323 -0.7104 -1.2304 6 7 1.7715 -0.3513 -2.4455 7 6 2.2852 -1.0705 -3.4119 8 6 3.0354 -2.1310 -2.9748 9 6 3.7032 -3.0771 -3.7919 10 6 4.9974 -3.3944 -3.5427 11 6 5.7741 -2.5775 -2.6865 12 8 5.3203 -1.5267 -2.2707 13 7 7.0159 -2.9627 -2.3314 14 6 7.8200 -2.1169 -1.4458 15 6 9.1777 -2.7790 -1.2026 16 6 10.0172 -1.8960 -0.2772 17 6 11.3543 -2.5483 -0.0372 18 1 11.5824 -3.4980 -0.4983 19 6 12.2865 -1.9330 0.7710 20 7 13.4536 -2.5020 0.9800 21 14 11.8924 -0.2900 1.5680 22 1 11.2625 -0.5211 2.8928 23 1 13.1451 0.4877 1.7444 24 1 10.9564 0.4691 0.7004 25 16 3.0190 -2.1058 -1.2129 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 -1.7489 1.2492 33 1 3.1299 -0.7208 1.2494 34 1 1.6766 -0.2074 2.1393 35 1 2.1288 -0.8504 -4.4576 36 1 3.1811 -3.5452 -4.6132 37 1 5.4358 -4.2704 -3.9972 38 1 7.3775 -3.7994 -2.6629 39 1 7.9693 -1.1425 -1.9109 40 1 7.3018 -1.9902 -0.4953 41 1 9.0286 -3.7535 -0.7377 42 1 9.6958 -2.9053 -2.1532 43 1 10.1663 -0.9213 -0.7417 44 1 9.4990 -1.7701 0.6735 45 1 14.1093 -2.0692 1.5489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255081361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:53 Heat of formation + Delta-G solvation = -13.591153 kcal Electronic energy + Delta-G solvation = -24244.920103 eV Core-core repulsion = 20774.281935 eV Total energy + Delta-G solvation = -3470.638168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12062 -40.54637 -37.79972 -37.03257 -35.19489 -34.87398 -33.32021 -30.31070 -28.84780 -28.37649 -28.20706 -26.66003 -25.06848 -23.27799 -22.24275 -22.07097 -20.98353 -19.73140 -18.95845 -18.49199 -17.95395 -16.93121 -16.71972 -16.35165 -16.13045 -15.91653 -15.40619 -15.28277 -15.14883 -14.86685 -14.73938 -14.44921 -14.27675 -13.83143 -13.66897 -13.64732 -13.20210 -13.08721 -12.75581 -12.71482 -12.66914 -12.55449 -12.32257 -12.04348 -11.94507 -11.91888 -11.79251 -11.61455 -11.35479 -11.24213 -10.77720 -10.75977 -10.46463 -10.10607 -9.51154 -9.19363 -8.30843 -6.34711 -0.76737 0.37958 0.68431 1.01819 1.34981 1.36918 1.48549 1.91759 2.34751 2.38798 2.46414 3.04825 3.13294 3.78076 3.92299 3.94176 4.03191 4.08430 4.16655 4.19281 4.36636 4.40851 4.49292 4.59114 4.63763 4.68592 4.79660 4.87483 4.89661 4.91071 4.92481 4.97894 5.02021 5.10268 5.10976 5.21429 5.29244 5.32937 5.40433 5.42727 5.52968 5.53997 5.64042 6.26031 6.64928 6.73525 6.85509 7.30113 7.31268 8.85583 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.002832 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.900754 B = 9884.366006 C =11325.089645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.006 3.994 3 C -0.130 4.130 4 C -0.154 4.154 5 C 0.031 3.969 6 N -0.499 5.499 7 C 0.048 3.952 8 C -0.226 4.226 9 C 0.023 3.977 10 C -0.218 4.218 11 C 0.523 3.477 12 O -0.574 6.574 13 N -0.714 5.714 14 C 0.131 3.869 15 C -0.100 4.100 16 C -0.011 4.011 17 C -0.531 4.531 18 H 0.038 0.962 19 C 0.006 3.994 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.250 1.250 25 S 0.191 5.809 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.193 0.807 36 H 0.187 0.813 37 H 0.174 0.826 38 H 0.414 0.586 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.769 -0.263 -6.858 30.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.002 3.998 3 C -0.189 4.189 4 C -0.211 4.211 5 C -0.243 4.243 6 N -0.212 5.212 7 C -0.108 4.108 8 C -0.347 4.347 9 C 0.001 3.999 10 C -0.242 4.242 11 C 0.314 3.686 12 O -0.457 6.457 13 N -0.366 5.366 14 C 0.007 3.993 15 C -0.138 4.138 16 C -0.049 4.049 17 C -0.569 4.569 18 H 0.056 0.944 19 C -0.191 4.191 20 N -0.590 5.590 21 Si 0.770 3.230 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.174 1.174 25 S 0.453 5.547 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.209 0.791 36 H 0.204 0.796 37 H 0.192 0.808 38 H 0.250 0.750 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -29.815 0.338 -5.684 30.354 hybrid contribution 0.983 0.458 -0.766 1.328 sum -28.832 0.796 -6.450 29.555 Atomic orbital electron populations 1.21780 0.91088 1.02433 1.03129 1.19377 0.97430 0.94961 0.88059 1.21803 1.00197 0.93793 1.03072 1.22039 1.01040 1.00988 0.97077 1.27559 1.00581 0.99034 0.97111 1.65807 1.25042 1.31235 0.99163 1.22655 0.96255 0.91638 1.00207 1.24065 1.08260 1.05045 0.97368 1.21030 0.93146 0.91048 0.94662 1.22440 0.95502 1.02683 1.03541 1.17845 0.82284 0.87069 0.81378 1.90932 1.71506 1.26462 1.56772 1.45992 1.15651 1.25278 1.49675 1.21196 0.91004 0.93787 0.93358 1.21472 0.92999 0.99238 1.00050 1.19457 0.93883 0.95943 0.95660 1.21461 0.99623 1.06726 1.29047 0.94360 1.25968 0.94615 1.01675 0.96882 1.70054 1.07711 1.41363 1.39915 0.85718 0.78095 0.79637 0.79585 1.19077 1.20944 1.17413 1.83698 1.42857 1.25522 1.02587 0.92645 0.89589 0.92455 0.89385 0.94280 0.92718 0.91497 0.93228 0.88555 0.79071 0.79633 0.80822 0.74960 0.93089 0.92651 0.91659 0.91836 0.96388 0.96298 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.45 71.98 0.61 -1.31 16 2 C 0.01 0.11 0.99 -52.93 -0.05 0.05 16 3 C -0.13 -2.55 8.45 71.98 0.61 -1.94 16 4 C -0.15 -2.54 7.53 71.98 0.54 -2.00 16 5 C 0.03 0.76 5.77 88.47 0.51 1.27 16 6 N -0.50 -13.16 10.48 -189.30 -1.98 -15.14 16 7 C 0.05 1.12 11.38 84.55 0.96 2.08 16 8 C -0.23 -5.06 4.36 22.86 0.10 -4.96 16 9 C 0.02 0.36 9.90 22.51 0.22 0.58 16 10 C -0.22 -3.70 9.80 22.47 0.22 -3.48 16 11 C 0.52 13.61 7.11 85.06 0.61 14.22 16 12 O -0.57 -19.24 12.38 -4.59 -0.06 -19.30 16 13 N -0.71 -18.00 5.55 -472.19 -2.62 -20.62 16 14 C 0.13 4.17 5.67 86.38 0.49 4.66 16 15 C -0.10 -3.60 5.27 30.59 0.16 -3.44 16 16 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 17 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 18 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 19 C 0.01 0.32 5.47 84.65 0.46 0.79 16 20 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 21 Si 0.95 44.56 27.47 68.60 1.88 46.45 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 25 S 0.19 4.67 18.69 -56.49 -1.06 3.61 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.02 7.91 -2.39 -0.02 1.00 16 33 H 0.05 0.98 7.91 -2.39 -0.02 0.97 16 34 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.19 3.35 8.06 -2.91 -0.02 3.32 16 36 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.41 7.91 8.43 -92.71 -0.78 7.12 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.02 0.82 7.20 -2.39 -0.02 0.81 16 44 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 45 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -75.38 382.18 2.41 -72.97 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.13 Total: 14.94 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 5.81 Total: -23.83 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -4.30 Total: -94.85 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.06 Total: -19.30 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.06 Total: 3.61 kcal Total: -75.38 2.41 -72.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255081361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.383 kcal (2) G-P(sol) polarization free energy of solvation -75.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds