Wall clock time and date at job start Tue Mar 31 2020 13:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47032 * 2 1 4 4 C 1.50696 * 109.46832 * 180.02562 * 3 2 1 5 5 N 1.29431 * 124.80918 * 90.02895 * 4 3 2 6 6 C 1.30938 * 117.36814 * 180.02562 * 5 4 3 7 7 C 1.50700 * 122.90512 * 180.02562 * 6 5 4 8 8 C 1.35667 * 114.19079 * 359.97438 * 6 5 4 9 9 C 1.46682 * 126.13199 * 180.02562 * 8 6 5 10 10 O 1.21686 * 120.00017 * 6.88719 * 9 8 6 11 11 N 1.34773 * 120.00071 * 186.88739 * 9 8 6 12 12 C 1.46501 * 119.99951 * 185.64361 * 11 9 8 13 13 C 1.50699 * 109.46807 * 269.72220 * 12 11 9 14 14 H 1.08007 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00026 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00268 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47158 * 89.99480 * 17 15 13 19 19 H 1.48500 * 109.46802 * 209.99704 * 17 15 13 20 20 H 1.48502 * 109.46874 * 329.99650 * 17 15 13 21 21 C 1.46501 * 120.00227 * 5.35986 * 11 9 8 22 22 C 1.52998 * 109.47585 * 274.70167 * 21 11 9 23 23 C 1.52997 * 117.50012 * 243.74626 * 22 21 11 24 24 C 1.52991 * 117.50174 * 175.08350 * 22 21 11 25 25 S 1.70964 * 124.80254 * 270.33812 * 4 3 2 26 26 H 1.09004 * 109.47139 * 299.99748 * 1 2 3 27 27 H 1.09000 * 109.47537 * 59.99496 * 1 2 3 28 28 H 1.09001 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46614 * 240.00219 * 2 1 3 30 30 H 1.08991 * 109.47070 * 120.00195 * 2 1 3 31 31 H 1.08995 * 109.47171 * 59.99965 * 3 2 1 32 32 H 1.09002 * 109.46916 * 299.99991 * 3 2 1 33 33 H 1.09000 * 109.46821 * 269.95634 * 7 6 5 34 34 H 1.08995 * 109.46834 * 29.96186 * 7 6 5 35 35 H 1.09007 * 109.46948 * 149.95805 * 7 6 5 36 36 H 1.09002 * 109.47341 * 29.71963 * 12 11 9 37 37 H 1.09002 * 109.47478 * 149.72315 * 12 11 9 38 38 H 0.96999 * 120.00685 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.46727 * 34.69965 * 21 11 9 40 40 H 1.08996 * 109.47296 * 154.69693 * 21 11 9 41 41 H 1.09004 * 115.54944 * 29.41349 * 22 21 11 42 42 H 1.08998 * 117.49682 * 359.97438 * 23 22 21 43 43 H 1.08994 * 117.50364 * 145.01800 * 23 22 21 44 44 H 1.08997 * 117.50253 * 214.97577 * 24 22 21 45 45 H 1.09006 * 117.49651 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.2853 1.4431 -1.0637 6 6 5.5838 1.4424 -0.8946 7 6 6.5589 1.4437 -2.0436 8 6 5.9753 1.4417 0.4043 9 6 7.3592 1.4413 0.8905 10 8 8.2800 1.5681 0.1052 11 7 7.6109 1.3006 2.2070 12 6 8.9821 1.4237 2.7079 13 6 9.6432 0.0696 2.6999 14 1 9.0966 -0.7963 2.3565 15 6 10.9457 -0.0643 3.1320 16 7 11.6113 0.9899 3.5506 17 14 11.7651 -1.7430 3.1228 18 1 12.4382 -1.9582 1.8167 19 1 12.7697 -1.8094 4.2143 20 1 10.7386 -2.7959 3.3300 21 6 6.5125 1.0306 3.1381 22 6 5.8647 2.3511 3.5594 23 6 5.9516 2.7411 5.0363 24 6 4.6188 2.2761 4.4442 25 16 4.5233 1.4339 1.4027 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 6.7942 0.4163 -2.3215 34 1 6.1154 1.9582 -2.8960 35 1 7.4725 1.9575 -1.7442 36 1 9.5427 2.1055 2.0684 37 1 8.9635 1.8130 3.7259 38 1 12.5275 0.8958 3.8550 39 1 5.7689 0.4007 2.6498 40 1 6.9002 0.5188 4.0189 41 1 5.9116 3.1537 2.8233 42 1 6.4700 2.0567 5.7078 43 1 6.0554 3.8001 5.2719 44 1 3.8463 3.0296 4.2907 45 1 4.2604 1.2860 4.7259 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264012099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:14 Heat of formation + Delta-G solvation = 23.414745 kcal Electronic energy + Delta-G solvation = -25444.167108 eV Core-core repulsion = 21975.133636 eV Total energy + Delta-G solvation = -3469.033472 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00757 -39.01089 -37.21082 -35.41070 -34.52462 -32.64012 -31.56311 -28.82807 -28.18461 -27.48243 -25.97662 -23.37573 -23.13503 -22.29060 -21.44204 -21.09847 -20.18258 -18.17127 -17.84897 -16.53239 -16.44380 -15.61291 -15.18553 -15.14849 -14.99276 -14.70320 -14.41652 -13.97379 -13.65594 -13.65376 -13.18632 -12.90440 -12.80809 -12.32503 -12.26599 -12.18566 -12.03316 -11.70244 -11.58592 -11.43641 -11.38824 -11.29771 -11.11798 -10.98849 -10.89428 -10.68263 -10.32189 -10.19370 -10.02973 -9.67904 -9.37523 -9.07714 -8.95701 -8.46993 -8.42571 -7.76523 -6.07246 -4.12011 0.52879 1.47201 1.85979 2.74583 3.30025 3.36269 3.38096 3.67267 3.73354 3.95007 4.08848 4.42896 4.70429 4.74571 4.77134 4.85110 4.97658 4.99823 5.22040 5.27187 5.27924 5.30596 5.39431 5.46779 5.49834 5.51890 5.63826 5.67609 5.77156 5.87359 5.88095 5.95184 5.99628 6.01019 6.09697 6.12937 6.19576 6.32776 6.64508 6.98370 7.35950 7.44301 7.86915 7.89039 8.18183 8.26104 8.81615 8.96816 9.53011 11.00813 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.004014 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.747937 B = 6973.465521 C = 7822.704182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.042 4.042 4 C 0.008 3.992 5 N -0.482 5.482 6 C 0.134 3.866 7 C -0.089 4.089 8 C -0.291 4.291 9 C 0.583 3.417 10 O -0.519 6.519 11 N -0.586 5.586 12 C 0.251 3.749 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.130 3.870 22 C -0.177 4.177 23 C -0.167 4.167 24 C -0.175 4.175 25 S 0.209 5.791 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.264 0.736 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.327 1.749 -1.059 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.083 4.083 4 C -0.267 4.267 5 N -0.197 5.197 6 C -0.003 4.003 7 C -0.148 4.148 8 C -0.415 4.415 9 C 0.368 3.632 10 O -0.397 6.397 11 N -0.316 5.316 12 C 0.132 3.868 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.004 3.996 22 C -0.198 4.198 23 C -0.204 4.204 24 C -0.213 4.213 25 S 0.469 5.531 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.143 1.867 -0.812 21.241 hybrid contribution 1.048 -0.895 -0.645 1.521 sum -20.096 0.972 -1.457 20.172 Atomic orbital electron populations 1.21760 0.95079 1.01975 1.01978 1.21530 0.96064 0.95242 1.02966 1.20279 0.85483 0.98560 1.03937 1.27847 1.01968 1.01897 0.94945 1.66094 1.04351 1.16984 1.32314 1.20568 0.89908 0.96107 0.93748 1.20650 0.97372 1.03426 0.93358 1.25909 0.98716 1.19699 0.97198 1.16734 0.85330 0.78144 0.82983 1.90749 1.44276 1.50436 1.54247 1.48093 1.10162 1.68473 1.04887 1.19344 0.74669 0.97836 0.94923 1.21411 0.97976 0.93940 1.43264 0.92421 1.24913 0.96932 0.97010 0.95084 1.69924 1.11139 1.28907 1.43304 0.86506 0.79211 0.83982 0.77779 1.20491 1.21133 1.19932 1.21314 0.88952 0.94164 0.95167 1.22872 1.01684 1.00467 0.94808 1.23039 0.99818 1.02056 0.95462 1.22956 0.91265 1.02911 1.04177 1.84776 0.95049 1.65737 1.07493 0.92525 0.92505 0.92416 0.91286 0.91613 0.89816 0.89243 0.90607 0.91368 0.87795 0.93739 0.94524 0.92673 0.90963 0.88269 0.87561 0.88258 0.88913 0.88770 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.60 16 2 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 3 C -0.04 -0.39 5.79 -27.88 -0.16 -0.55 16 4 C 0.01 0.10 6.64 -13.29 -0.09 0.01 16 5 N -0.48 -7.64 10.50 -7.70 -0.08 -7.72 16 6 C 0.13 2.33 6.79 -83.89 -0.57 1.76 16 7 C -0.09 -1.46 9.78 36.01 0.35 -1.10 16 8 C -0.29 -5.23 6.20 -37.09 -0.23 -5.46 16 9 C 0.58 12.69 7.58 -12.85 -0.10 12.59 16 10 O -0.52 -13.01 13.89 5.20 0.07 -12.94 16 11 N -0.59 -12.50 2.46 -176.61 -0.44 -12.93 16 12 C 0.25 6.44 5.10 -5.19 -0.03 6.42 16 13 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 14 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 17 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.13 2.14 5.21 -4.04 -0.02 2.12 16 22 C -0.18 -2.42 3.66 -90.63 -0.33 -2.75 16 23 C -0.17 -2.00 10.18 -26.70 -0.27 -2.27 16 24 C -0.18 -1.77 9.47 -26.70 -0.25 -2.03 16 25 S 0.21 2.76 15.33 -107.50 -1.65 1.12 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.90 5.87 -51.93 -0.30 1.60 16 36 H 0.04 1.29 7.50 -51.93 -0.39 0.90 16 37 H 0.04 0.94 8.07 -51.93 -0.42 0.53 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.07 1.10 4.95 -26.55 -0.13 0.97 16 40 H 0.10 1.65 7.77 -51.93 -0.40 1.25 16 41 H 0.11 1.58 7.69 -51.93 -0.40 1.18 16 42 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -32.29 377.12 -9.68 -41.97 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.08 Total: 0.00 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.91 Total: -6.44 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.22 Total: -46.10 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.07 Total: -12.94 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.65 Total: 1.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.29 -9.68 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.388 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds