Wall clock time and date at job start Tue Mar 31 2020 13:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47032 * 2 1 4 4 C 1.50696 * 109.46832 * 180.02562 * 3 2 1 5 5 N 1.29431 * 124.80918 * 90.02895 * 4 3 2 6 6 C 1.30938 * 117.36814 * 180.02562 * 5 4 3 7 7 C 1.50700 * 122.90512 * 180.02562 * 6 5 4 8 8 C 1.35667 * 114.19079 * 359.97438 * 6 5 4 9 9 C 1.46682 * 126.13199 * 180.02562 * 8 6 5 10 10 O 1.21686 * 120.00017 * 6.88719 * 9 8 6 11 11 N 1.34773 * 120.00071 * 186.88739 * 9 8 6 12 12 C 1.46501 * 119.99951 * 185.64361 * 11 9 8 13 13 C 1.50699 * 109.46807 * 269.72220 * 12 11 9 14 14 H 1.08007 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00026 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00268 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47158 * 89.99480 * 17 15 13 19 19 H 1.48500 * 109.46802 * 209.99704 * 17 15 13 20 20 H 1.48502 * 109.46874 * 329.99650 * 17 15 13 21 21 C 1.46501 * 120.00227 * 5.35986 * 11 9 8 22 22 C 1.52998 * 109.47585 * 274.70167 * 21 11 9 23 23 C 1.52997 * 117.50012 * 243.74626 * 22 21 11 24 24 C 1.52991 * 117.50174 * 175.08350 * 22 21 11 25 25 S 1.70964 * 124.80254 * 270.33812 * 4 3 2 26 26 H 1.09004 * 109.47139 * 299.99748 * 1 2 3 27 27 H 1.09000 * 109.47537 * 59.99496 * 1 2 3 28 28 H 1.09001 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46614 * 240.00219 * 2 1 3 30 30 H 1.08991 * 109.47070 * 120.00195 * 2 1 3 31 31 H 1.08995 * 109.47171 * 59.99965 * 3 2 1 32 32 H 1.09002 * 109.46916 * 299.99991 * 3 2 1 33 33 H 1.09000 * 109.46821 * 269.95634 * 7 6 5 34 34 H 1.08995 * 109.46834 * 29.96186 * 7 6 5 35 35 H 1.09007 * 109.46948 * 149.95805 * 7 6 5 36 36 H 1.09002 * 109.47341 * 29.71963 * 12 11 9 37 37 H 1.09002 * 109.47478 * 149.72315 * 12 11 9 38 38 H 0.96999 * 120.00685 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.46727 * 34.69965 * 21 11 9 40 40 H 1.08996 * 109.47296 * 154.69693 * 21 11 9 41 41 H 1.09004 * 115.54944 * 29.41349 * 22 21 11 42 42 H 1.08998 * 117.49682 * 359.97438 * 23 22 21 43 43 H 1.08994 * 117.50364 * 145.01800 * 23 22 21 44 44 H 1.08997 * 117.50253 * 214.97577 * 24 22 21 45 45 H 1.09006 * 117.49651 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.2853 1.4431 -1.0637 6 6 5.5838 1.4424 -0.8946 7 6 6.5589 1.4437 -2.0436 8 6 5.9753 1.4417 0.4043 9 6 7.3592 1.4413 0.8905 10 8 8.2800 1.5681 0.1052 11 7 7.6109 1.3006 2.2070 12 6 8.9821 1.4237 2.7079 13 6 9.6432 0.0696 2.6999 14 1 9.0966 -0.7963 2.3565 15 6 10.9457 -0.0643 3.1320 16 7 11.6113 0.9899 3.5506 17 14 11.7651 -1.7430 3.1228 18 1 12.4382 -1.9582 1.8167 19 1 12.7697 -1.8094 4.2143 20 1 10.7386 -2.7959 3.3300 21 6 6.5125 1.0306 3.1381 22 6 5.8647 2.3511 3.5594 23 6 5.9516 2.7411 5.0363 24 6 4.6188 2.2761 4.4442 25 16 4.5233 1.4339 1.4027 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 6.7942 0.4163 -2.3215 34 1 6.1154 1.9582 -2.8960 35 1 7.4725 1.9575 -1.7442 36 1 9.5427 2.1055 2.0684 37 1 8.9635 1.8130 3.7259 38 1 12.5275 0.8958 3.8550 39 1 5.7689 0.4007 2.6498 40 1 6.9002 0.5188 4.0189 41 1 5.9116 3.1537 2.8233 42 1 6.4700 2.0567 5.7078 43 1 6.0554 3.8001 5.2719 44 1 3.8463 3.0296 4.2907 45 1 4.2604 1.2860 4.7259 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264012099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:13 Heat of formation + Delta-G solvation = 4.687944 kcal Electronic energy + Delta-G solvation = -25444.979163 eV Core-core repulsion = 21975.133636 eV Total energy + Delta-G solvation = -3469.845527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38222 -40.43544 -38.44370 -36.31894 -36.07626 -34.68498 -32.71995 -30.57255 -29.11426 -28.87292 -27.62526 -25.14336 -24.19801 -23.22707 -22.44192 -22.19758 -21.49985 -19.61205 -19.12632 -18.64174 -17.81722 -17.12060 -16.57593 -16.41498 -16.19517 -15.84756 -15.63156 -15.37294 -14.93379 -14.78799 -14.38070 -14.32489 -14.12198 -14.08156 -13.41686 -13.38063 -13.25724 -12.97427 -12.91443 -12.73284 -12.62851 -12.50824 -12.35099 -12.27845 -12.18437 -12.05971 -11.76613 -11.60381 -11.29214 -11.10511 -10.85692 -10.66737 -10.42395 -10.23966 -9.74136 -9.39693 -8.24490 -6.38972 -0.71556 0.27750 0.68446 1.35224 1.38529 1.44489 1.48268 2.09637 2.19154 2.39349 2.90159 3.02841 3.05593 3.50444 3.83163 3.85642 3.93263 4.07244 4.11262 4.12641 4.14421 4.29884 4.43741 4.51288 4.64963 4.69348 4.70343 4.77243 4.85020 4.87176 4.88173 4.98320 4.98651 5.07318 5.16019 5.21939 5.24855 5.29134 5.34795 5.36701 5.47928 5.51218 5.76134 6.02099 6.52062 6.68263 6.71007 7.17449 7.34203 8.82770 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.004014 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.747937 B = 6973.465521 C = 7822.704182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.044 4.044 4 C 0.020 3.980 5 N -0.504 5.504 6 C 0.135 3.865 7 C -0.088 4.088 8 C -0.340 4.340 9 C 0.576 3.424 10 O -0.570 6.570 11 N -0.592 5.592 12 C 0.270 3.730 13 C -0.544 4.544 14 H 0.050 0.950 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.965 3.035 18 H -0.281 1.281 19 H -0.272 1.272 20 H -0.263 1.263 21 C 0.128 3.872 22 C -0.202 4.202 23 C -0.174 4.174 24 C -0.137 4.137 25 S 0.282 5.718 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.077 0.923 36 H -0.001 1.001 37 H 0.031 0.969 38 H 0.268 0.732 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.023 0.890 0.174 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.084 4.084 4 C -0.253 4.253 5 N -0.220 5.220 6 C -0.004 4.004 7 C -0.146 4.146 8 C -0.464 4.464 9 C 0.364 3.636 10 O -0.452 6.452 11 N -0.322 5.322 12 C 0.149 3.851 13 C -0.582 4.582 14 H 0.068 0.932 15 C -0.187 4.187 16 N -0.564 5.564 17 Si 0.789 3.211 18 H -0.207 1.207 19 H -0.197 1.197 20 H -0.187 1.187 21 C 0.004 3.996 22 C -0.223 4.223 23 C -0.211 4.211 24 C -0.175 4.175 25 S 0.543 5.457 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.017 0.983 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.139 0.861 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -24.895 1.007 0.466 24.920 hybrid contribution 2.087 -0.584 -1.026 2.398 sum -22.808 0.424 -0.560 22.819 Atomic orbital electron populations 1.21735 0.93258 1.02554 1.02861 1.21525 0.97578 0.94232 1.02311 1.20576 0.82346 0.99659 1.05857 1.28694 1.03782 0.98340 0.94483 1.66198 1.03478 1.18926 1.33399 1.20720 0.90871 0.95097 0.93681 1.20575 0.96555 1.03381 0.94127 1.25545 0.98614 1.23355 0.98885 1.17243 0.86774 0.77015 0.82547 1.90702 1.46460 1.52649 1.55428 1.48028 1.09772 1.68515 1.05838 1.18769 0.76895 0.95983 0.93408 1.21644 0.98689 0.94432 1.43459 0.93177 1.25793 0.97456 1.00990 0.94458 1.70034 1.11582 1.31052 1.43780 0.85457 0.78412 0.79376 0.77825 1.20739 1.19707 1.18738 1.21539 0.87842 0.96245 0.94019 1.22659 1.05406 0.98607 0.95642 1.23111 1.01696 1.02519 0.93790 1.23154 0.90181 1.04562 0.99555 1.84245 0.91426 1.64372 1.05611 0.91073 0.92215 0.92066 0.93035 0.91309 0.86672 0.88559 0.90478 0.89315 0.90400 0.98251 0.95144 0.92299 0.89517 0.88815 0.88873 0.88824 0.88255 0.86139 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 3 C -0.04 -0.64 5.79 29.85 0.17 -0.47 16 4 C 0.02 0.48 6.64 88.46 0.59 1.06 16 5 N -0.50 -15.37 10.50 -178.28 -1.87 -17.24 16 6 C 0.14 4.76 6.79 42.10 0.29 5.05 16 7 C -0.09 -2.99 9.78 71.24 0.70 -2.30 16 8 C -0.34 -12.45 6.20 23.88 0.15 -12.30 16 9 C 0.58 26.60 7.58 86.45 0.66 27.26 16 10 O -0.57 -31.01 13.89 -4.30 -0.06 -31.07 16 11 N -0.59 -26.55 2.46 -830.89 -2.05 -28.60 16 12 C 0.27 14.77 5.10 85.63 0.44 15.21 16 13 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 14 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 15 C 0.01 0.72 5.46 84.66 0.46 1.18 16 16 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 17 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 21 C 0.13 4.20 5.21 86.38 0.45 4.65 16 22 C -0.20 -5.27 3.66 -10.80 -0.04 -5.31 16 23 C -0.17 -3.88 10.18 30.62 0.31 -3.57 16 24 C -0.14 -2.24 9.47 30.61 0.29 -1.95 16 25 S 0.28 6.82 15.33 -56.49 -0.87 5.95 16 26 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.08 3.09 5.87 -2.38 -0.01 3.08 16 36 H 0.00 -0.04 7.50 -2.39 -0.02 -0.06 16 37 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 38 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.09 2.53 4.95 -18.52 -0.09 2.44 16 40 H 0.09 3.14 7.77 -2.39 -0.02 3.13 16 41 H 0.09 2.72 7.69 -2.38 -0.02 2.70 16 42 H 0.09 2.20 8.03 -2.39 -0.02 2.18 16 43 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -75.18 377.12 3.95 -71.22 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.90 Total: 13.01 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.59 Total: -4.97 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -3.63 Total: -101.38 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.06 Total: -31.07 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 6.82 SS G_CDS: -0.87 Total: 5.95 kcal Total: -75.18 3.95 -71.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.911 kcal (2) G-P(sol) polarization free energy of solvation -75.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds