Wall clock time and date at job start Tue Mar 31 2020 13:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46706 * 2 1 4 4 C 1.52994 * 109.47052 * 119.99818 * 2 1 3 5 5 C 1.53005 * 109.47266 * 175.00448 * 4 2 1 6 6 N 1.46496 * 109.47104 * 180.02562 * 5 4 2 7 7 C 1.46498 * 119.99742 * 269.99542 * 6 5 4 8 8 C 1.50700 * 109.47259 * 270.00290 * 7 6 5 9 9 H 1.07998 * 120.00117 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99714 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99375 * 180.02562 * 10 8 7 12 12 Si 1.86792 * 120.00410 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46951 * 89.99949 * 12 10 8 14 14 H 1.48500 * 109.47306 * 210.00340 * 12 10 8 15 15 H 1.48502 * 109.46977 * 330.00482 * 12 10 8 16 16 C 1.34776 * 120.00035 * 90.00329 * 6 5 4 17 17 O 1.21277 * 120.00300 * 359.97438 * 16 6 5 18 18 C 1.50700 * 119.99821 * 179.97438 * 16 6 5 19 19 S 1.81404 * 109.47023 * 179.97438 * 18 16 6 20 20 C 1.76200 * 102.99864 * 179.97438 * 19 18 16 21 21 C 1.39542 * 120.87285 * 359.71968 * 20 19 18 22 22 C 1.37866 * 119.05886 * 180.29714 * 21 20 19 23 23 N 1.32014 * 120.85190 * 359.97204 * 22 21 20 24 24 C 1.32012 * 121.92014 * 0.02562 * 23 22 21 25 25 C 1.37861 * 120.85403 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47770 * 299.99541 * 1 2 3 27 27 H 1.09002 * 109.47102 * 60.00437 * 1 2 3 28 28 H 1.09003 * 109.46743 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47346 * 240.00327 * 2 1 3 30 30 H 1.09002 * 109.47048 * 59.99515 * 3 2 1 31 31 H 1.08994 * 109.47194 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46983 * 299.99636 * 3 2 1 33 33 H 1.08996 * 109.47163 * 55.00221 * 4 2 1 34 34 H 1.09004 * 109.47207 * 295.00238 * 4 2 1 35 35 H 1.09004 * 109.46948 * 59.99756 * 5 4 2 36 36 H 1.09004 * 109.46836 * 300.00016 * 5 4 2 37 37 H 1.08993 * 109.47362 * 30.00489 * 7 6 5 38 38 H 1.09007 * 109.46788 * 150.00490 * 7 6 5 39 39 H 0.97003 * 119.99812 * 180.02562 * 11 10 8 40 40 H 1.08995 * 109.47674 * 59.99405 * 18 16 6 41 41 H 1.09006 * 109.47002 * 299.99436 * 18 16 6 42 42 H 1.08005 * 120.47247 * 0.25131 * 21 20 19 43 43 H 1.08000 * 119.57367 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.57604 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.47580 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1880 6 7 4.0531 -1.5220 2.3839 7 6 4.4014 -0.7548 3.5823 8 6 5.8553 -0.3628 3.5229 9 1 6.4596 -0.6562 2.6772 10 6 6.4144 0.3695 4.5487 11 7 7.6831 0.7120 4.4965 12 14 5.3695 0.8765 6.0117 13 1 5.4388 -0.1754 7.0576 14 1 5.8788 2.1576 6.5636 15 1 3.9602 1.0501 5.5770 16 6 4.1819 -2.8636 2.3816 17 8 3.8932 -3.4988 1.3896 18 6 4.6847 -3.5744 3.6116 19 16 4.7450 -5.3598 3.2960 20 6 5.3463 -6.0113 4.8187 21 6 5.6495 -5.1681 5.8883 22 6 6.1235 -5.7174 7.0606 23 7 6.2903 -7.0217 7.1781 24 6 6.0150 -7.8524 6.1898 25 6 5.5380 -7.3837 4.9843 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 3.1299 1.4427 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6054 -1.7197 1.2951 34 1 1.7516 -0.1582 2.1370 35 1 3.9994 0.1677 1.1421 36 1 3.8533 -1.3939 0.3003 37 1 3.7849 0.1427 3.6311 38 1 4.2256 -1.3651 4.4683 39 1 8.0765 1.2269 5.2184 40 1 4.0125 -3.3759 4.4463 41 1 5.6840 -3.2144 3.8563 42 1 5.5156 -4.1001 5.7989 43 1 6.3612 -5.0725 7.8936 44 1 6.1661 -8.9130 6.3271 45 1 5.3143 -8.0688 4.1800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264024753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:42 Heat of formation + Delta-G solvation = -30.439577 kcal Electronic energy + Delta-G solvation = -24658.395062 eV Core-core repulsion = 21187.026291 eV Total energy + Delta-G solvation = -3471.368771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97922 -40.86495 -37.93284 -36.50221 -34.54595 -33.60063 -32.52070 -31.81383 -30.34274 -28.91222 -27.98474 -24.90412 -24.64364 -24.57601 -24.05892 -20.90847 -20.35461 -19.11884 -19.05771 -18.21068 -17.52012 -17.04245 -16.86066 -16.77982 -16.08044 -16.01133 -15.91982 -15.12658 -15.01770 -14.86640 -14.69057 -14.57475 -14.27376 -14.07145 -13.96723 -13.67773 -13.53876 -13.16873 -12.99206 -12.80716 -12.71446 -12.52821 -12.18549 -12.14333 -11.81806 -11.69592 -11.66877 -11.59847 -11.51486 -11.40497 -11.01009 -10.80005 -10.45385 -10.21536 -9.54455 -8.71962 -8.32416 -6.41414 0.03068 0.12738 0.14757 1.17326 1.37860 1.41098 1.49095 1.49601 2.15945 2.31799 2.76192 3.01283 3.40067 3.53474 3.80665 3.85935 3.91783 3.96379 3.97632 4.06420 4.15212 4.23076 4.31284 4.50254 4.54672 4.61813 4.66003 4.75217 4.76917 4.81686 4.82476 4.84247 4.92598 4.98704 5.04041 5.10592 5.14091 5.31982 5.39592 5.47628 5.50873 5.58806 5.65003 6.11164 6.45804 6.65089 6.96086 7.05352 7.25742 8.83563 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009889 B = 0.004202 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.713151 B = 6662.615943 C = 8827.519490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.116 4.116 5 C 0.117 3.883 6 N -0.586 5.586 7 C 0.214 3.786 8 C -0.544 4.544 9 H 0.030 0.970 10 C 0.024 3.976 11 N -0.939 5.939 12 Si 0.934 3.066 13 H -0.257 1.257 14 H -0.288 1.288 15 H -0.237 1.237 16 C 0.531 3.469 17 O -0.572 6.572 18 C -0.138 4.138 19 S -0.039 6.039 20 C -0.067 4.067 21 C -0.200 4.200 22 C 0.112 3.888 23 N -0.514 5.514 24 C 0.115 3.885 25 C -0.158 4.158 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.269 0.731 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.176 0.824 44 H 0.193 0.807 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 -7.566 0.581 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.155 4.155 5 C -0.005 4.005 6 N -0.315 5.315 7 C 0.093 3.907 8 C -0.583 4.583 9 H 0.048 0.952 10 C -0.176 4.176 11 N -0.578 5.578 12 Si 0.756 3.244 13 H -0.181 1.181 14 H -0.214 1.214 15 H -0.160 1.160 16 C 0.318 3.682 17 O -0.454 6.454 18 C -0.288 4.288 19 S 0.204 5.796 20 C -0.188 4.188 21 C -0.226 4.226 22 C -0.045 4.045 23 N -0.225 5.225 24 C -0.043 4.043 25 C -0.184 4.184 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.151 0.849 41 H 0.137 0.863 42 H 0.155 0.845 43 H 0.193 0.807 44 H 0.210 0.790 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.549 -8.573 -0.151 14.384 hybrid contribution 0.553 1.720 0.912 2.024 sum -10.996 -6.853 0.761 12.979 Atomic orbital electron populations 1.21785 0.93868 1.01789 1.02369 1.21038 0.96740 0.96332 0.96968 1.21899 1.00829 0.95561 1.02337 1.21900 0.93871 1.00489 0.99242 1.21569 0.94991 0.97180 0.86788 1.47889 1.62565 1.05200 1.15874 1.19734 0.94624 0.92744 0.83647 1.21463 0.94986 1.35434 1.06380 0.95186 1.25754 0.95814 0.94856 1.01157 1.70051 1.14162 1.39059 1.34560 0.85913 0.80483 0.78562 0.79400 1.18114 1.21380 1.16010 1.19695 0.77483 0.82815 0.88186 1.90642 1.52925 1.66167 1.35625 1.23813 1.07826 0.95547 1.01643 1.85972 1.79684 1.01264 1.12658 1.22763 0.99923 0.98154 0.97975 1.22349 1.04245 1.01127 0.94921 1.22972 0.93138 0.91727 0.96671 1.67815 1.17091 1.04679 1.32879 1.23239 0.92389 1.01148 0.87533 1.22016 1.02462 0.93168 1.00790 0.92408 0.91468 0.92940 0.91447 0.92469 0.93370 0.91428 0.92804 0.91501 0.90176 0.91836 0.93141 0.93327 0.92217 0.84865 0.86345 0.84506 0.80728 0.78995 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.19 71.98 0.66 -1.98 16 2 C -0.09 -2.08 2.92 -10.79 -0.03 -2.11 16 3 C -0.15 -3.22 8.95 71.98 0.64 -2.58 16 4 C -0.12 -3.23 5.01 30.59 0.15 -3.08 16 5 C 0.12 4.00 5.16 86.38 0.45 4.44 16 6 N -0.59 -22.35 2.46 -826.16 -2.03 -24.38 16 7 C 0.21 8.54 4.03 85.63 0.35 8.89 16 8 C -0.54 -27.44 9.83 25.60 0.25 -27.19 16 9 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 10 C 0.02 1.22 5.47 84.66 0.46 1.69 16 11 N -0.94 -53.87 13.96 21.45 0.30 -53.57 16 12 Si 0.93 37.43 27.47 68.60 1.88 39.32 16 13 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 14 H -0.29 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.24 -8.44 6.54 99.48 0.65 -7.79 16 16 C 0.53 20.58 7.69 87.66 0.67 21.25 16 17 O -0.57 -24.38 15.44 -3.02 -0.05 -24.43 16 18 C -0.14 -4.62 3.41 71.24 0.24 -4.38 16 19 S -0.04 -1.22 21.10 -56.49 -1.19 -2.42 16 20 C -0.07 -1.85 6.17 22.90 0.14 -1.70 16 21 C -0.20 -5.48 9.43 22.50 0.21 -5.27 16 22 C 0.11 2.85 11.17 84.58 0.94 3.80 16 23 N -0.51 -13.12 10.36 -196.19 -2.03 -15.16 16 24 C 0.11 2.43 11.17 84.58 0.94 3.37 16 25 C -0.16 -3.61 9.90 22.50 0.22 -3.38 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.16 6.56 -2.39 -0.02 1.14 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.77 6.50 -2.38 -0.02 2.76 16 36 H 0.06 2.30 7.42 -2.39 -0.02 2.28 16 37 H 0.05 1.92 7.13 -2.39 -0.02 1.91 16 38 H 0.05 1.76 5.87 -2.38 -0.01 1.74 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.13 3.82 7.06 -2.39 -0.02 3.80 16 41 H 0.12 4.33 7.65 -2.39 -0.02 4.31 16 42 H 0.14 3.72 6.08 -2.91 -0.02 3.70 16 43 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 44 H 0.19 2.57 8.06 -2.91 -0.02 2.54 16 45 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -64.44 380.99 4.11 -60.32 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.91 Total: 28.55 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 6.32 Total: -8.24 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -3.76 Total: -93.10 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 1.88 Total: 39.32 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -1.19 Total: -2.42 kcal Total: -64.44 4.11 -60.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264024753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.884 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds