Wall clock time and date at job start Tue Mar 31 2020 13:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 C 1.52996 * 109.46981 * 240.00181 * 2 1 3 5 5 C 1.52999 * 109.47042 * 120.00046 * 2 1 3 6 6 N 1.46502 * 109.47118 * 54.25787 * 5 2 1 7 7 C 1.46494 * 119.99933 * 275.81713 * 6 5 2 8 8 C 1.50700 * 109.46994 * 269.99831 * 7 6 5 9 9 H 1.07996 * 120.00049 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00050 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99938 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99900 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47180 * 89.99977 * 12 10 8 14 14 H 1.48495 * 109.47200 * 210.00173 * 12 10 8 15 15 H 1.48500 * 109.46895 * 329.99887 * 12 10 8 16 16 C 1.34772 * 119.99660 * 95.81868 * 6 5 2 17 17 O 1.21280 * 119.99725 * 185.44347 * 16 6 5 18 18 C 1.50700 * 120.00509 * 5.43601 * 16 6 5 19 19 S 1.81395 * 109.47306 * 174.41788 * 18 16 6 20 20 C 1.76205 * 102.99888 * 180.02562 * 19 18 16 21 21 C 1.39549 * 120.87270 * 359.71999 * 20 19 18 22 22 C 1.37856 * 119.06245 * 180.29400 * 21 20 19 23 23 N 1.32017 * 120.84989 * 359.97438 * 22 21 20 24 24 C 1.32022 * 121.92314 * 0.02562 * 23 22 21 25 25 C 1.37868 * 120.84627 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.46925 * 300.00317 * 1 2 3 27 27 H 1.08999 * 109.47024 * 59.99991 * 1 2 3 28 28 H 1.08998 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46899 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47297 * 299.99843 * 3 2 1 31 31 H 1.09000 * 109.47093 * 59.99942 * 3 2 1 32 32 H 1.09002 * 109.47059 * 304.12016 * 4 2 1 33 33 H 1.09000 * 109.47187 * 64.11856 * 4 2 1 34 34 H 1.09002 * 109.47000 * 184.12303 * 4 2 1 35 35 H 1.09000 * 109.47108 * 294.26026 * 5 2 1 36 36 H 1.08995 * 109.47008 * 174.26189 * 5 2 1 37 37 H 1.09003 * 109.47491 * 29.99908 * 7 6 5 38 38 H 1.09000 * 109.47077 * 149.99966 * 7 6 5 39 39 H 0.97002 * 119.99752 * 180.02562 * 11 10 8 40 40 H 1.09003 * 109.46696 * 54.41600 * 18 16 6 41 41 H 1.08999 * 109.47161 * 294.42134 * 18 16 6 42 42 H 1.08007 * 120.46761 * 0.25386 * 21 20 19 43 43 H 1.08001 * 119.57928 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.57551 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.46540 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 7 1.4422 -2.0568 1.3203 7 6 0.1134 -2.2339 1.9111 8 6 0.2512 -2.4925 3.3893 9 1 1.2307 -2.5216 3.8433 10 6 -0.8731 -2.6920 4.1621 11 7 -0.7528 -2.9172 5.4522 12 14 -2.5672 -2.6425 3.3766 13 1 -2.9418 -4.0055 2.9213 14 1 -3.5601 -2.1625 4.3710 15 1 -2.5464 -1.7202 2.2129 16 6 2.1147 -3.1224 0.8422 17 8 1.5817 -4.2114 0.8104 18 6 3.5288 -2.9610 0.3471 19 16 4.2119 -4.5880 -0.0731 20 6 5.8417 -4.2040 -0.6218 21 6 6.2948 -2.8844 -0.6517 22 6 7.5748 -2.6258 -1.0937 23 7 8.3672 -3.6068 -1.4844 24 6 7.9760 -4.8676 -1.4711 25 6 6.7107 -5.2107 -1.0443 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6177 -1.7253 -1.2869 33 1 1.7382 -0.1665 -2.1377 34 1 3.1276 -0.7856 -1.2131 35 1 1.7631 -0.1515 2.1362 36 1 3.1252 -0.8111 1.1993 37 1 -0.4775 -1.3316 1.7536 38 1 -0.3842 -3.0811 1.4389 39 1 -1.5438 -3.0579 5.9958 40 1 4.1366 -2.5021 1.1270 41 1 3.5334 -2.3253 -0.5383 42 1 5.6516 -2.0772 -0.3337 43 1 7.9339 -1.6076 -1.1207 44 1 8.6555 -5.6401 -1.7995 45 1 6.3972 -6.2442 -1.0356 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264205396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:46 Heat of formation + Delta-G solvation = 2.471254 kcal Electronic energy + Delta-G solvation = -25374.200813 eV Core-core repulsion = 21904.259163 eV Total energy + Delta-G solvation = -3469.941650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.04722 -39.81066 -37.28827 -34.12102 -32.79283 -32.48180 -31.62811 -30.53732 -28.01916 -27.24583 -27.06429 -25.71996 -23.97043 -23.62838 -22.35409 -19.57947 -18.73349 -17.83353 -17.13850 -16.88593 -16.45815 -15.94936 -15.72055 -15.68119 -14.97597 -14.48134 -14.27115 -14.02998 -13.99866 -13.92780 -13.74058 -13.27886 -12.94624 -12.75391 -12.44715 -12.43874 -12.03120 -11.96340 -11.72475 -11.61935 -11.46419 -11.15585 -10.95971 -10.77065 -10.71317 -10.67259 -10.47957 -10.32482 -10.11695 -9.62005 -9.59220 -9.42641 -9.31569 -8.64141 -7.87197 -7.64732 -6.14878 -4.14201 0.88990 0.93412 1.19178 2.22458 3.03370 3.23806 3.29406 3.32202 3.57383 3.61279 4.24531 4.33489 4.55794 4.61580 4.74720 4.78995 4.80226 4.90038 4.94547 5.05082 5.10747 5.19288 5.25157 5.42427 5.51467 5.53173 5.54174 5.58237 5.73971 5.75962 5.79010 5.95017 5.96782 5.99888 6.07773 6.20975 6.35219 6.42427 6.47186 6.62773 6.84288 7.17148 7.53688 7.77171 8.01640 8.37797 8.68988 8.88142 9.44677 10.98372 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.003745 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.649103 B = 7475.478672 C = 8657.006294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.146 4.146 5 C 0.117 3.883 6 N -0.579 5.579 7 C 0.210 3.790 8 C -0.533 4.533 9 H 0.074 0.926 10 C 0.075 3.925 11 N -0.895 5.895 12 Si 0.873 3.127 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.529 3.471 17 O -0.523 6.523 18 C -0.162 4.162 19 S -0.006 6.006 20 C -0.057 4.057 21 C -0.194 4.194 22 C 0.118 3.882 23 N -0.499 5.499 24 C 0.115 3.885 25 C -0.158 4.158 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.037 0.963 39 H 0.265 0.735 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.133 0.867 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.212 5.576 -14.819 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.203 4.203 5 C -0.008 4.008 6 N -0.310 5.310 7 C 0.090 3.910 8 C -0.571 4.571 9 H 0.092 0.908 10 C -0.128 4.128 11 N -0.533 5.533 12 Si 0.700 3.300 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.189 1.189 16 C 0.313 3.687 17 O -0.400 6.400 18 C -0.313 4.313 19 S 0.239 5.761 20 C -0.179 4.179 21 C -0.221 4.221 22 C -0.040 4.040 23 N -0.210 5.210 24 C -0.042 4.042 25 C -0.185 4.185 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.151 0.849 43 H 0.174 0.826 44 H 0.176 0.824 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.946 4.112 -14.793 19.454 hybrid contribution -1.088 1.179 0.107 1.608 sum 10.858 5.290 -14.686 19.014 Atomic orbital electron populations 1.22075 0.93995 1.02946 1.01331 1.21008 0.96931 0.95418 0.95490 1.21806 1.00663 0.95003 1.02063 1.22045 0.99936 1.00931 0.97378 1.21654 0.96932 0.84203 0.97984 1.47728 1.19826 1.05380 1.58027 1.19938 0.78940 0.97802 0.94316 1.21322 0.95364 1.49766 0.90693 0.90770 1.24833 0.98949 0.94358 0.94678 1.69890 1.29881 1.48368 1.05191 0.86897 0.84469 0.79204 0.79440 1.19850 1.21014 1.18950 1.19195 0.85582 0.85110 0.78765 1.90725 1.68632 1.25241 1.55409 1.24309 1.00224 1.00250 1.06534 1.86439 1.02709 1.09542 1.77425 1.22819 0.99987 0.96506 0.98563 1.22135 0.98987 0.95739 1.05216 1.22626 0.89723 0.98642 0.92971 1.67753 1.36587 1.00671 1.15958 1.22684 0.93608 0.93492 0.94459 1.21745 0.94729 0.99725 1.02262 0.92076 0.93314 0.91365 0.92756 0.92584 0.92199 0.92358 0.92429 0.92966 0.89386 0.91352 0.93789 0.94501 0.92486 0.86856 0.86121 0.84880 0.82629 0.82398 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 6.98 37.16 0.26 -1.72 16 2 C -0.09 -1.03 0.85 -154.50 -0.13 -1.16 16 3 C -0.14 -1.29 8.47 37.16 0.31 -0.97 16 4 C -0.15 -1.58 6.84 37.16 0.25 -1.33 16 5 C 0.12 1.65 4.58 -4.04 -0.02 1.63 16 6 N -0.58 -10.86 2.00 -175.07 -0.35 -11.21 16 7 C 0.21 4.81 3.00 -5.20 -0.02 4.79 16 8 C -0.53 -14.71 9.94 -34.44 -0.34 -15.05 16 9 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 10 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 11 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 12 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 16 C 0.53 10.06 6.42 -10.99 -0.07 9.99 16 17 O -0.52 -12.25 15.43 5.56 0.09 -12.16 16 18 C -0.16 -2.25 3.22 36.01 0.12 -2.13 16 19 S -0.01 -0.08 21.11 -107.50 -2.27 -2.35 16 20 C -0.06 -0.69 6.17 -38.61 -0.24 -0.92 16 21 C -0.19 -2.04 9.43 -39.23 -0.37 -2.41 16 22 C 0.12 1.19 11.17 -17.61 -0.20 1.00 16 23 N -0.50 -5.67 10.36 -13.36 -0.14 -5.80 16 24 C 0.12 1.15 11.17 -17.61 -0.20 0.96 16 25 C -0.16 -1.69 9.90 -39.23 -0.39 -2.08 16 26 H 0.06 0.86 7.72 -51.93 -0.40 0.46 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.09 5.76 -51.93 -0.30 0.79 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.76 6.74 -51.93 -0.35 0.41 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.47 6.49 -51.93 -0.34 0.14 16 35 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 36 H 0.07 0.79 6.11 -51.93 -0.32 0.47 16 37 H 0.04 0.95 4.38 -51.93 -0.23 0.72 16 38 H 0.04 0.92 6.78 -51.93 -0.35 0.57 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.11 1.39 7.00 -51.92 -0.36 1.03 16 41 H 0.12 1.36 4.32 -51.92 -0.22 1.14 16 42 H 0.13 1.16 6.08 -52.48 -0.32 0.84 16 43 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -33.52 365.43 -8.77 -42.29 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.58 Total: 1.11 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.12 Total: -7.40 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.29 Total: -43.29 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.27 Total: -2.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.52 -8.77 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264205396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.758 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds