Wall clock time and date at job start Tue Mar 31 2020 13:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 C 1.52996 * 109.46981 * 240.00181 * 2 1 3 5 5 C 1.52999 * 109.47042 * 120.00046 * 2 1 3 6 6 N 1.46502 * 109.47118 * 54.25787 * 5 2 1 7 7 C 1.46494 * 119.99933 * 275.81713 * 6 5 2 8 8 C 1.50700 * 109.46994 * 269.99831 * 7 6 5 9 9 H 1.07996 * 120.00049 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00050 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99938 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99900 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47180 * 89.99977 * 12 10 8 14 14 H 1.48495 * 109.47200 * 210.00173 * 12 10 8 15 15 H 1.48500 * 109.46895 * 329.99887 * 12 10 8 16 16 C 1.34772 * 119.99660 * 95.81868 * 6 5 2 17 17 O 1.21280 * 119.99725 * 185.44347 * 16 6 5 18 18 C 1.50700 * 120.00509 * 5.43601 * 16 6 5 19 19 S 1.81395 * 109.47306 * 174.41788 * 18 16 6 20 20 C 1.76205 * 102.99888 * 180.02562 * 19 18 16 21 21 C 1.39549 * 120.87270 * 359.71999 * 20 19 18 22 22 C 1.37856 * 119.06245 * 180.29400 * 21 20 19 23 23 N 1.32017 * 120.84989 * 359.97438 * 22 21 20 24 24 C 1.32022 * 121.92314 * 0.02562 * 23 22 21 25 25 C 1.37868 * 120.84627 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.46925 * 300.00317 * 1 2 3 27 27 H 1.08999 * 109.47024 * 59.99991 * 1 2 3 28 28 H 1.08998 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46899 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47297 * 299.99843 * 3 2 1 31 31 H 1.09000 * 109.47093 * 59.99942 * 3 2 1 32 32 H 1.09002 * 109.47059 * 304.12016 * 4 2 1 33 33 H 1.09000 * 109.47187 * 64.11856 * 4 2 1 34 34 H 1.09002 * 109.47000 * 184.12303 * 4 2 1 35 35 H 1.09000 * 109.47108 * 294.26026 * 5 2 1 36 36 H 1.08995 * 109.47008 * 174.26189 * 5 2 1 37 37 H 1.09003 * 109.47491 * 29.99908 * 7 6 5 38 38 H 1.09000 * 109.47077 * 149.99966 * 7 6 5 39 39 H 0.97002 * 119.99752 * 180.02562 * 11 10 8 40 40 H 1.09003 * 109.46696 * 54.41600 * 18 16 6 41 41 H 1.08999 * 109.47161 * 294.42134 * 18 16 6 42 42 H 1.08007 * 120.46761 * 0.25386 * 21 20 19 43 43 H 1.08001 * 119.57928 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.57551 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.46540 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 7 1.4422 -2.0568 1.3203 7 6 0.1134 -2.2339 1.9111 8 6 0.2512 -2.4925 3.3893 9 1 1.2307 -2.5216 3.8433 10 6 -0.8731 -2.6920 4.1621 11 7 -0.7528 -2.9172 5.4522 12 14 -2.5672 -2.6425 3.3766 13 1 -2.9418 -4.0055 2.9213 14 1 -3.5601 -2.1625 4.3710 15 1 -2.5464 -1.7202 2.2129 16 6 2.1147 -3.1224 0.8422 17 8 1.5817 -4.2114 0.8104 18 6 3.5288 -2.9610 0.3471 19 16 4.2119 -4.5880 -0.0731 20 6 5.8417 -4.2040 -0.6218 21 6 6.2948 -2.8844 -0.6517 22 6 7.5748 -2.6258 -1.0937 23 7 8.3672 -3.6068 -1.4844 24 6 7.9760 -4.8676 -1.4711 25 6 6.7107 -5.2107 -1.0443 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6177 -1.7253 -1.2869 33 1 1.7382 -0.1665 -2.1377 34 1 3.1276 -0.7856 -1.2131 35 1 1.7631 -0.1515 2.1362 36 1 3.1252 -0.8111 1.1993 37 1 -0.4775 -1.3316 1.7536 38 1 -0.3842 -3.0811 1.4389 39 1 -1.5438 -3.0579 5.9958 40 1 4.1366 -2.5021 1.1270 41 1 3.5334 -2.3253 -0.5383 42 1 5.6516 -2.0772 -0.3337 43 1 7.9339 -1.6076 -1.1207 44 1 8.6555 -5.6401 -1.7995 45 1 6.3972 -6.2442 -1.0356 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264205396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:45 Heat of formation + Delta-G solvation = -18.094338 kcal Electronic energy + Delta-G solvation = -25375.092604 eV Core-core repulsion = 21904.259163 eV Total energy + Delta-G solvation = -3470.833441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22228 -40.83723 -38.54315 -35.72604 -34.45350 -33.58805 -32.55561 -31.84402 -29.62180 -28.13283 -28.06740 -27.01659 -24.87117 -24.55041 -24.03658 -20.86912 -19.78509 -19.20049 -18.88659 -18.21193 -17.41679 -17.07314 -17.02490 -16.81513 -16.20078 -15.90772 -15.32270 -15.20683 -15.01789 -14.90191 -14.70139 -14.53551 -14.41965 -14.11950 -13.87596 -13.69755 -13.30728 -12.98237 -12.84828 -12.77637 -12.56778 -12.54280 -12.46624 -12.07827 -11.88030 -11.75521 -11.67974 -11.62163 -11.56461 -11.34066 -10.89773 -10.82574 -10.41289 -10.18328 -9.44312 -8.73029 -8.35735 -6.40114 0.06052 0.12243 0.16238 1.20867 1.29810 1.34084 1.41445 1.57931 2.18712 2.28344 2.79684 2.98970 3.38663 3.57327 3.77810 3.81568 3.84773 3.85952 3.96747 4.03621 4.08357 4.19626 4.44056 4.51749 4.56159 4.71812 4.74447 4.79212 4.84408 4.85577 4.87988 4.92875 4.93570 5.01625 5.08033 5.10997 5.17761 5.35921 5.40963 5.43436 5.52835 5.61495 5.67721 6.20418 6.54187 6.61671 6.99931 7.13952 7.27901 8.81061 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.003745 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.649103 B = 7475.478672 C = 8657.006294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.132 4.132 4 C -0.145 4.145 5 C 0.108 3.892 6 N -0.582 5.582 7 C 0.224 3.776 8 C -0.537 4.537 9 H 0.031 0.969 10 C 0.015 3.985 11 N -0.943 5.943 12 Si 0.939 3.061 13 H -0.278 1.278 14 H -0.275 1.275 15 H -0.236 1.236 16 C 0.520 3.480 17 O -0.578 6.578 18 C -0.140 4.140 19 S -0.064 6.064 20 C -0.064 4.064 21 C -0.194 4.194 22 C 0.116 3.884 23 N -0.516 5.516 24 C 0.114 3.886 25 C -0.165 4.165 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.014 0.986 39 H 0.268 0.732 40 H 0.133 0.867 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.186 0.814 44 H 0.186 0.814 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.617 7.958 -17.265 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.190 4.190 4 C -0.202 4.202 5 C -0.015 4.015 6 N -0.311 5.311 7 C 0.102 3.898 8 C -0.576 4.576 9 H 0.049 0.951 10 C -0.183 4.183 11 N -0.583 5.583 12 Si 0.762 3.238 13 H -0.204 1.204 14 H -0.200 1.200 15 H -0.159 1.159 16 C 0.307 3.693 17 O -0.459 6.459 18 C -0.291 4.291 19 S 0.180 5.820 20 C -0.186 4.186 21 C -0.220 4.220 22 C -0.042 4.042 23 N -0.227 5.227 24 C -0.043 4.043 25 C -0.191 4.191 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.151 0.849 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.203 0.797 44 H 0.203 0.797 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.395 6.547 -17.263 22.810 hybrid contribution -1.377 0.419 0.882 1.688 sum 12.018 6.966 -16.381 21.478 Atomic orbital electron populations 1.22077 0.95593 1.01082 1.01913 1.20968 0.95648 0.97021 0.94544 1.21769 1.01972 0.92670 1.02559 1.22037 1.01279 0.99456 0.97386 1.22016 0.98705 0.81797 0.98962 1.47735 1.18638 1.07466 1.57289 1.19546 0.81647 0.97507 0.91136 1.21597 0.93562 1.49165 0.93233 0.95054 1.25767 1.03540 0.93951 0.95088 1.70040 1.31276 1.50086 1.06945 0.85843 0.78948 0.79472 0.79547 1.20421 1.20004 1.15894 1.20001 0.87330 0.84143 0.77854 1.90693 1.70270 1.27305 1.57588 1.24127 0.96487 1.00332 1.08118 1.86675 1.05624 1.10981 1.78765 1.22742 0.98266 0.97790 0.99762 1.22400 0.99527 0.95451 1.04663 1.23135 0.89306 0.99776 0.91941 1.67820 1.37224 1.01336 1.16329 1.23122 0.93590 0.93895 0.93689 1.21970 0.94956 1.00138 1.02076 0.93032 0.91209 0.94352 0.90677 0.91201 0.92659 0.94993 0.90716 0.90583 0.90769 0.88130 0.91885 0.96765 0.92300 0.84884 0.83068 0.82920 0.79664 0.79709 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 6.98 71.99 0.50 -3.30 16 2 C -0.08 -1.69 0.85 -52.18 -0.04 -1.73 16 3 C -0.13 -1.94 8.47 71.98 0.61 -1.33 16 4 C -0.14 -2.65 6.84 71.98 0.49 -2.16 16 5 C 0.11 2.88 4.58 86.38 0.40 3.28 16 6 N -0.58 -21.96 2.00 -826.18 -1.65 -23.61 16 7 C 0.22 10.47 3.00 85.63 0.26 10.73 16 8 C -0.54 -30.87 9.94 25.60 0.25 -30.61 16 9 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 10 C 0.01 0.87 5.47 84.66 0.46 1.33 16 11 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 12 Si 0.94 43.96 27.47 68.60 1.88 45.84 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 15 H -0.24 -9.83 6.54 99.48 0.65 -9.17 16 16 C 0.52 20.02 6.42 87.66 0.56 20.58 16 17 O -0.58 -28.27 15.43 -3.03 -0.05 -28.32 16 18 C -0.14 -3.70 3.22 71.24 0.23 -3.47 16 19 S -0.06 -1.85 21.11 -56.49 -1.19 -3.04 16 20 C -0.06 -1.44 6.17 22.90 0.14 -1.30 16 21 C -0.19 -3.49 9.43 22.50 0.21 -3.28 16 22 C 0.12 1.95 11.17 84.57 0.94 2.90 16 23 N -0.52 -10.29 10.36 -196.18 -2.03 -12.33 16 24 C 0.11 2.03 11.17 84.58 0.94 2.98 16 25 C -0.17 -3.30 9.90 22.50 0.22 -3.08 16 26 H 0.05 1.38 7.72 -2.39 -0.02 1.36 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.19 5.76 -2.39 -0.01 1.18 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.03 0.76 6.74 -2.39 -0.02 0.75 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.01 6.49 -2.39 -0.02 1.00 16 35 H 0.07 2.20 8.11 -2.39 -0.02 2.18 16 36 H 0.10 2.01 6.11 -2.39 -0.01 1.99 16 37 H 0.06 2.72 4.38 -2.39 -0.01 2.71 16 38 H 0.01 0.74 6.78 -2.39 -0.02 0.72 16 39 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.13 2.95 7.00 -2.39 -0.02 2.94 16 41 H 0.15 2.97 4.32 -2.39 -0.01 2.96 16 42 H 0.15 2.02 6.08 -2.91 -0.02 2.01 16 43 H 0.19 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 45 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -78.29 365.43 4.38 -73.90 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.93 Total: 14.85 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 6.19 Total: -8.48 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.38 Total: -94.76 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.05 Total: -28.32 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -1.19 Total: -3.04 kcal Total: -78.29 4.38 -73.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264205396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.810 kcal (2) G-P(sol) polarization free energy of solvation -78.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds