Wall clock time and date at job start Tue Mar 31 2020 12:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29356 * 124.67720 * 2 1 4 4 C 1.30952 * 117.49588 * 180.26837 * 3 2 1 5 5 C 1.37071 * 113.84749 * 359.97438 * 4 3 2 6 6 C 1.41727 * 126.19359 * 179.97438 * 5 4 3 7 7 C 1.35558 * 120.00256 * 180.02562 * 6 5 4 8 8 C 1.41547 * 119.99889 * 179.97438 * 7 6 5 9 9 O 1.21778 * 120.00033 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99816 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00245 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.47125 * 89.99906 * 11 10 8 13 13 H 1.08006 * 119.99901 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00174 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99661 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99920 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47403 * 60.00025 * 16 14 12 18 18 H 1.48504 * 109.46898 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47203 * 299.99673 * 16 14 12 20 20 C 1.46502 * 119.99985 * 359.97438 * 10 8 7 21 21 C 1.52999 * 109.47117 * 90.00374 * 20 10 8 22 22 C 1.53004 * 109.47115 * 180.02562 * 21 20 10 23 23 C 1.52997 * 109.47222 * 64.99587 * 22 21 20 24 24 C 1.53004 * 109.46851 * 184.99916 * 22 21 20 25 25 S 1.70918 * 124.67351 * 180.29967 * 2 1 3 26 26 H 1.08997 * 109.46882 * 269.70029 * 1 2 3 27 27 H 1.09000 * 109.46627 * 29.70207 * 1 2 3 28 28 H 1.08996 * 109.47174 * 149.70016 * 1 2 3 29 29 H 1.07997 * 123.07841 * 180.02562 * 4 3 2 30 30 H 1.08007 * 119.99737 * 359.97438 * 6 5 4 31 31 H 1.07995 * 119.99543 * 0.02562 * 7 6 5 32 32 H 1.09000 * 109.47812 * 209.99548 * 11 10 8 33 33 H 1.09000 * 109.47192 * 329.99970 * 11 10 8 34 34 H 0.96998 * 119.99848 * 179.97438 * 15 14 12 35 35 H 1.09004 * 109.47144 * 210.00088 * 20 10 8 36 36 H 1.08997 * 109.47323 * 330.00031 * 20 10 8 37 37 H 1.09004 * 109.46880 * 299.99876 * 21 20 10 38 38 H 1.08997 * 109.47304 * 59.99645 * 21 20 10 39 39 H 1.08996 * 109.46712 * 304.99652 * 22 21 20 40 40 H 1.09003 * 109.47056 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47221 * 300.00110 * 23 22 21 42 42 H 1.09004 * 109.46616 * 60.00243 * 23 22 21 43 43 H 1.08997 * 109.47138 * 59.99919 * 24 22 21 44 44 H 1.09003 * 109.46569 * 179.97438 * 24 22 21 45 45 H 1.08998 * 109.47018 * 299.99893 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0638 0.0000 4 6 3.5422 0.9001 -0.0054 5 6 3.9353 -0.4130 -0.0099 6 6 5.2711 -0.8868 -0.0167 7 6 5.5175 -2.2197 -0.0211 8 6 6.8516 -2.6928 -0.0284 9 8 7.7779 -1.9023 -0.0303 10 7 7.0966 -4.0181 -0.0333 11 6 8.4773 -4.5077 -0.0403 12 6 8.9565 -4.6798 1.3782 13 1 8.2982 -4.4480 2.2024 14 6 10.2353 -5.1332 1.6237 15 7 11.0367 -5.4159 0.6199 16 14 10.8294 -5.3457 3.3818 17 1 9.9608 -6.3252 4.0829 18 1 12.2289 -5.8422 3.3747 19 1 10.7707 -4.0394 4.0855 20 6 5.9822 -4.9690 -0.0304 21 6 5.5872 -5.2961 -1.4719 22 6 4.4229 -6.2888 -1.4689 23 6 3.1896 -5.6265 -0.8516 24 6 4.1095 -6.7116 -2.9056 25 16 2.4794 -1.4056 -0.0074 26 1 -0.3633 -0.0054 1.0276 27 1 -0.3632 0.8927 -0.5092 28 1 -0.3633 -0.8872 -0.5185 29 1 4.2402 1.7242 -0.0055 30 1 6.0927 -0.1857 -0.0192 31 1 4.6960 -2.9207 -0.0198 32 1 8.5203 -5.4665 -0.5570 33 1 9.1151 -3.7889 -0.5546 34 1 11.9364 -5.7345 0.7926 35 1 6.2860 -5.8833 0.4794 36 1 5.1306 -4.5293 0.4888 37 1 5.2834 -4.3818 -1.9817 38 1 6.4387 -5.7358 -1.9911 39 1 4.6955 -7.1666 -0.8831 40 1 2.3600 -6.3336 -0.8499 41 1 3.4129 -5.3253 0.1719 42 1 2.9171 -4.7486 -1.4375 43 1 4.9882 -7.1834 -3.3454 44 1 3.2804 -7.4191 -2.9034 45 1 3.8371 -5.8337 -3.4914 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264720235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:43 Heat of formation + Delta-G solvation = 5.536325 kcal Electronic energy + Delta-G solvation = -24704.805430 eV Core-core repulsion = 21234.996691 eV Total energy + Delta-G solvation = -3469.808739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.87998 -39.35591 -36.86414 -34.87793 -34.27129 -32.62584 -31.61189 -29.15145 -28.53288 -27.18197 -26.81974 -24.58804 -23.43465 -23.29467 -21.42576 -19.92179 -19.73712 -18.58592 -17.43804 -16.97414 -16.40717 -15.51221 -15.23077 -15.18347 -15.01464 -14.41094 -14.29113 -14.16551 -13.72930 -13.52269 -13.39596 -13.06343 -13.02641 -12.76637 -12.54293 -12.26800 -12.21970 -12.03405 -11.77148 -11.36200 -11.28400 -11.10311 -10.97428 -10.85277 -10.72091 -10.62093 -10.49731 -10.36252 -10.11132 -9.90730 -9.62184 -9.31824 -9.01663 -8.42164 -8.24058 -7.60651 -6.03164 -4.07911 -0.08323 1.07267 1.50130 1.78060 2.77925 3.32529 3.36882 3.40141 3.89700 3.97038 4.02968 4.46079 4.73537 4.81898 4.93171 4.98318 5.02678 5.07454 5.08577 5.12811 5.14303 5.30617 5.38465 5.50529 5.57612 5.63492 5.68056 5.75735 5.82742 5.85527 5.92561 5.96342 6.08340 6.18944 6.23266 6.26757 6.33222 6.43530 6.54094 7.10116 7.45685 7.49912 7.55249 7.93165 8.24483 8.41019 8.90133 9.07567 9.56910 11.04773 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.003613 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.136553 B = 7748.180150 C = 9384.908941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.029 3.971 3 N -0.474 5.474 4 C 0.063 3.937 5 C -0.202 4.202 6 C -0.014 4.014 7 C -0.185 4.185 8 C 0.534 3.466 9 O -0.544 6.544 10 N -0.589 5.589 11 C 0.246 3.754 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.109 3.891 21 C -0.134 4.134 22 C -0.095 4.095 23 C -0.151 4.151 24 C -0.145 4.145 25 S 0.153 5.847 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.183 0.817 30 H 0.151 0.849 31 H 0.122 0.878 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.719 3.558 -4.270 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.245 4.245 3 N -0.188 5.188 4 C -0.093 4.093 5 C -0.323 4.323 6 C -0.036 4.036 7 C -0.209 4.209 8 C 0.324 3.676 9 O -0.425 6.425 10 N -0.319 5.319 11 C 0.127 3.873 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.015 4.015 21 C -0.172 4.172 22 C -0.114 4.114 23 C -0.208 4.208 24 C -0.203 4.203 25 S 0.410 5.590 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.200 0.800 30 H 0.168 0.832 31 H 0.140 0.860 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.582 3.298 -4.315 23.226 hybrid contribution 1.068 0.445 0.993 1.524 sum -21.514 3.743 -3.322 22.089 Atomic orbital electron populations 1.20451 0.85216 1.04222 1.03895 1.27208 1.01944 0.91328 1.03981 1.65984 1.05299 1.31516 1.16039 1.22583 0.90879 0.95266 1.00546 1.24003 0.97920 0.96570 1.13778 1.20553 0.92417 0.96486 0.94158 1.22522 0.98233 0.95872 1.04267 1.16795 0.88696 0.83217 0.78865 1.90809 1.46348 1.54810 1.50547 1.48190 1.09144 1.04535 1.70011 1.19277 0.75555 0.95017 0.97454 1.21398 0.98554 1.44272 0.92269 0.92528 1.24926 0.96410 0.95347 0.97362 1.69923 1.07747 1.45082 1.30635 0.86568 0.77690 0.78514 0.84710 1.20258 1.21180 1.20171 1.21586 0.89424 0.94503 0.96013 1.22129 0.98029 0.99125 0.97960 1.21074 0.95074 0.98585 0.96713 1.21928 0.97426 1.00528 1.00929 1.21822 1.01238 1.00933 0.96282 1.83935 0.97185 1.11398 1.66466 0.89556 0.89278 0.90062 0.79997 0.83165 0.86033 0.94972 0.93795 0.92675 0.89878 0.91574 0.92150 0.91141 0.90890 0.92891 0.92404 0.92777 0.92641 0.92991 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.10 16 2 C 0.03 0.29 7.37 -13.32 -0.10 0.20 16 3 N -0.47 -5.70 10.50 -11.18 -0.12 -5.82 16 4 C 0.06 0.74 11.38 -18.35 -0.21 0.53 16 5 C -0.20 -2.50 6.26 -38.67 -0.24 -2.74 16 6 C -0.01 -0.20 9.39 -39.21 -0.37 -0.57 16 7 C -0.19 -2.98 8.58 -39.28 -0.34 -3.31 16 8 C 0.53 11.34 7.44 -15.00 -0.11 11.23 16 9 O -0.54 -13.83 15.69 5.12 0.08 -13.75 16 10 N -0.59 -12.53 2.46 -178.50 -0.44 -12.96 16 11 C 0.25 6.44 5.16 -5.19 -0.03 6.42 16 12 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 13 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.11 1.76 4.85 -4.04 -0.02 1.74 16 21 C -0.13 -1.83 5.01 -26.73 -0.13 -1.96 16 22 C -0.10 -1.03 2.92 -90.62 -0.26 -1.29 16 23 C -0.15 -1.40 8.95 37.16 0.33 -1.07 16 24 C -0.15 -1.42 9.19 37.16 0.34 -1.07 16 25 S 0.15 1.55 21.93 -107.50 -2.36 -0.81 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.18 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.15 2.25 7.46 -52.48 -0.39 1.85 16 31 H 0.12 1.66 5.13 -52.49 -0.27 1.39 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 36 H 0.07 0.93 4.51 -51.93 -0.23 0.69 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -33.79 387.48 -9.54 -43.32 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -7.08 Total: -1.20 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.18 Total: -5.65 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.18 Total: -44.69 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.08 Total: -13.75 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.36 Total: -0.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.79 -9.54 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264720235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.859 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds