Wall clock time and date at job start Tue Mar 31 2020 12:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29356 * 124.67720 * 2 1 4 4 C 1.30952 * 117.49588 * 180.26837 * 3 2 1 5 5 C 1.37071 * 113.84749 * 359.97438 * 4 3 2 6 6 C 1.41727 * 126.19359 * 179.97438 * 5 4 3 7 7 C 1.35558 * 120.00256 * 180.02562 * 6 5 4 8 8 C 1.41547 * 119.99889 * 179.97438 * 7 6 5 9 9 O 1.21778 * 120.00033 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99816 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00245 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.47125 * 89.99906 * 11 10 8 13 13 H 1.08006 * 119.99901 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00174 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99661 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99920 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47403 * 60.00025 * 16 14 12 18 18 H 1.48504 * 109.46898 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47203 * 299.99673 * 16 14 12 20 20 C 1.46502 * 119.99985 * 359.97438 * 10 8 7 21 21 C 1.52999 * 109.47117 * 90.00374 * 20 10 8 22 22 C 1.53004 * 109.47115 * 180.02562 * 21 20 10 23 23 C 1.52997 * 109.47222 * 64.99587 * 22 21 20 24 24 C 1.53004 * 109.46851 * 184.99916 * 22 21 20 25 25 S 1.70918 * 124.67351 * 180.29967 * 2 1 3 26 26 H 1.08997 * 109.46882 * 269.70029 * 1 2 3 27 27 H 1.09000 * 109.46627 * 29.70207 * 1 2 3 28 28 H 1.08996 * 109.47174 * 149.70016 * 1 2 3 29 29 H 1.07997 * 123.07841 * 180.02562 * 4 3 2 30 30 H 1.08007 * 119.99737 * 359.97438 * 6 5 4 31 31 H 1.07995 * 119.99543 * 0.02562 * 7 6 5 32 32 H 1.09000 * 109.47812 * 209.99548 * 11 10 8 33 33 H 1.09000 * 109.47192 * 329.99970 * 11 10 8 34 34 H 0.96998 * 119.99848 * 179.97438 * 15 14 12 35 35 H 1.09004 * 109.47144 * 210.00088 * 20 10 8 36 36 H 1.08997 * 109.47323 * 330.00031 * 20 10 8 37 37 H 1.09004 * 109.46880 * 299.99876 * 21 20 10 38 38 H 1.08997 * 109.47304 * 59.99645 * 21 20 10 39 39 H 1.08996 * 109.46712 * 304.99652 * 22 21 20 40 40 H 1.09003 * 109.47056 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47221 * 300.00110 * 23 22 21 42 42 H 1.09004 * 109.46616 * 60.00243 * 23 22 21 43 43 H 1.08997 * 109.47138 * 59.99919 * 24 22 21 44 44 H 1.09003 * 109.46569 * 179.97438 * 24 22 21 45 45 H 1.08998 * 109.47018 * 299.99893 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0638 0.0000 4 6 3.5422 0.9001 -0.0054 5 6 3.9353 -0.4130 -0.0099 6 6 5.2711 -0.8868 -0.0167 7 6 5.5175 -2.2197 -0.0211 8 6 6.8516 -2.6928 -0.0284 9 8 7.7779 -1.9023 -0.0303 10 7 7.0966 -4.0181 -0.0333 11 6 8.4773 -4.5077 -0.0403 12 6 8.9565 -4.6798 1.3782 13 1 8.2982 -4.4480 2.2024 14 6 10.2353 -5.1332 1.6237 15 7 11.0367 -5.4159 0.6199 16 14 10.8294 -5.3457 3.3818 17 1 9.9608 -6.3252 4.0829 18 1 12.2289 -5.8422 3.3747 19 1 10.7707 -4.0394 4.0855 20 6 5.9822 -4.9690 -0.0304 21 6 5.5872 -5.2961 -1.4719 22 6 4.4229 -6.2888 -1.4689 23 6 3.1896 -5.6265 -0.8516 24 6 4.1095 -6.7116 -2.9056 25 16 2.4794 -1.4056 -0.0074 26 1 -0.3633 -0.0054 1.0276 27 1 -0.3632 0.8927 -0.5092 28 1 -0.3633 -0.8872 -0.5185 29 1 4.2402 1.7242 -0.0055 30 1 6.0927 -0.1857 -0.0192 31 1 4.6960 -2.9207 -0.0198 32 1 8.5203 -5.4665 -0.5570 33 1 9.1151 -3.7889 -0.5546 34 1 11.9364 -5.7345 0.7926 35 1 6.2860 -5.8833 0.4794 36 1 5.1306 -4.5293 0.4888 37 1 5.2834 -4.3818 -1.9817 38 1 6.4387 -5.7358 -1.9911 39 1 4.6955 -7.1666 -0.8831 40 1 2.3600 -6.3336 -0.8499 41 1 3.4129 -5.3253 0.1719 42 1 2.9171 -4.7486 -1.4375 43 1 4.9882 -7.1834 -3.3454 44 1 3.2804 -7.4191 -2.9034 45 1 3.8371 -5.8337 -3.4914 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264720235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:42 Heat of formation + Delta-G solvation = -14.236974 kcal Electronic energy + Delta-G solvation = -24705.662864 eV Core-core repulsion = 21234.996691 eV Total energy + Delta-G solvation = -3470.666173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09006 -40.63691 -38.05524 -36.28453 -35.59538 -34.66089 -32.46158 -30.67122 -29.69083 -28.41822 -27.91742 -25.80515 -24.89765 -24.52980 -22.85509 -20.85323 -20.67676 -19.92655 -18.66338 -18.53522 -18.27016 -17.12480 -16.36543 -16.25832 -16.11416 -15.97253 -15.70477 -15.07947 -14.85210 -14.58567 -14.41267 -14.37199 -14.25424 -13.88389 -13.61325 -13.46532 -13.25034 -13.07298 -13.02506 -12.82766 -12.72685 -12.54778 -12.32495 -12.23926 -12.15309 -11.93827 -11.78188 -11.56839 -11.45322 -11.42140 -10.90043 -10.64775 -10.59500 -10.14193 -9.53669 -9.15430 -8.22482 -6.37980 -1.06975 0.23802 0.65040 0.66839 1.35609 1.40128 1.47561 1.81152 2.28914 2.46094 2.52392 3.06323 3.18634 3.67484 3.86393 3.98680 4.00962 4.04761 4.13242 4.15700 4.27029 4.39440 4.58675 4.64026 4.68157 4.69373 4.82786 4.87643 4.94152 4.95205 4.99324 5.07407 5.10736 5.13766 5.17902 5.22934 5.23496 5.29242 5.38436 5.51741 5.55064 5.60573 5.85294 6.05573 6.63919 6.68293 6.76174 7.26294 7.43934 8.84161 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.003613 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.136553 B = 7748.180150 C = 9384.908941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.044 3.956 3 N -0.505 5.505 4 C 0.082 3.918 5 C -0.249 4.249 6 C 0.028 3.972 7 C -0.218 4.218 8 C 0.531 3.469 9 O -0.605 6.605 10 N -0.597 5.597 11 C 0.264 3.736 12 C -0.544 4.544 13 H 0.052 0.948 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.968 3.032 17 H -0.259 1.259 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.107 3.893 21 C -0.125 4.125 22 C -0.091 4.091 23 C -0.150 4.150 24 C -0.144 4.144 25 S 0.193 5.807 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.196 0.804 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.022 0.978 33 H -0.003 1.003 34 H 0.268 0.732 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.603 3.494 -3.309 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.229 4.229 3 N -0.220 5.220 4 C -0.075 4.075 5 C -0.370 4.370 6 C 0.005 3.995 7 C -0.241 4.241 8 C 0.324 3.676 9 O -0.490 6.490 10 N -0.325 5.325 11 C 0.142 3.858 12 C -0.583 4.583 13 H 0.071 0.929 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.792 3.208 17 H -0.184 1.184 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.015 4.015 21 C -0.163 4.163 22 C -0.111 4.111 23 C -0.207 4.207 24 C -0.201 4.201 25 S 0.451 5.549 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.213 0.787 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.040 0.960 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.523 3.182 -3.362 26.924 hybrid contribution 2.071 0.632 0.642 2.258 sum -24.452 3.814 -2.721 24.897 Atomic orbital electron populations 1.20730 0.82337 1.05758 1.05442 1.28053 1.03666 0.90965 1.00200 1.66130 1.05304 1.32443 1.18104 1.22933 0.91391 0.95533 0.97633 1.23861 0.97847 0.97673 1.17579 1.20529 0.93449 0.95640 0.89865 1.22110 0.95687 0.96840 1.09446 1.17528 0.90272 0.82522 0.77279 1.90761 1.48512 1.56060 1.53625 1.48165 1.08430 1.05758 1.70183 1.18700 0.78018 0.93052 0.96008 1.21673 0.99128 1.44533 0.92949 0.92941 1.25865 0.96446 0.94743 1.02018 1.70049 1.08150 1.45576 1.32991 0.85470 0.77678 0.78595 0.79092 1.18381 1.20205 1.20329 1.21845 0.88480 0.93130 0.98045 1.22037 0.98521 1.00011 0.95768 1.21056 0.94536 0.97666 0.97799 1.21929 0.96889 1.01146 1.00731 1.21806 1.01490 1.01467 0.95327 1.83761 0.95283 1.10449 1.65365 0.87783 0.88630 0.87647 0.78695 0.84502 0.83476 0.96008 0.98487 0.92359 0.90931 0.88695 0.91841 0.93577 0.91095 0.91096 0.92443 0.92045 0.93649 0.91165 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.46 71.24 0.74 0.08 16 2 C 0.04 0.73 7.37 88.47 0.65 1.38 16 3 N -0.51 -10.78 10.50 -189.29 -1.99 -12.77 16 4 C 0.08 1.78 11.38 84.55 0.96 2.74 16 5 C -0.25 -5.77 6.26 22.86 0.14 -5.62 16 6 C 0.03 0.80 9.39 22.51 0.21 1.01 16 7 C -0.22 -7.06 8.58 22.47 0.19 -6.87 16 8 C 0.53 23.73 7.44 85.06 0.63 24.36 16 9 O -0.60 -32.93 15.69 -4.60 -0.07 -33.00 16 10 N -0.60 -26.78 2.46 -836.82 -2.06 -28.83 16 11 C 0.26 14.78 5.16 85.64 0.44 15.22 16 12 C -0.54 -32.32 9.39 25.60 0.24 -32.08 16 13 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 14 C 0.01 0.49 5.46 84.66 0.46 0.95 16 15 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 16 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 20 C 0.11 3.53 4.85 86.38 0.42 3.95 16 21 C -0.12 -3.45 5.01 30.60 0.15 -3.29 16 22 C -0.09 -1.84 2.92 -10.79 -0.03 -1.88 16 23 C -0.15 -2.33 8.95 71.98 0.64 -1.68 16 24 C -0.14 -2.56 9.19 71.98 0.66 -1.90 16 25 S 0.19 3.30 21.93 -56.49 -1.24 2.06 16 26 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.14 4.27 7.46 -2.91 -0.02 4.24 16 31 H 0.15 3.82 5.13 -2.91 -0.01 3.80 16 32 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 33 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.07 2.52 8.07 -2.38 -0.02 2.50 16 36 H 0.10 2.56 4.51 -2.39 -0.01 2.55 16 37 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.90 6.56 -2.39 -0.02 0.88 16 42 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -77.93 387.48 4.46 -73.47 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.97 Total: 11.89 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.53 Total: -3.62 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -3.76 Total: -98.54 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.07 Total: -33.00 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.24 Total: 2.06 kcal Total: -77.93 4.46 -73.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264720235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.237 kcal (2) G-P(sol) polarization free energy of solvation -77.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds