Wall clock time and date at job start Tue Mar 31 2020 13:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46720 * 2 1 4 4 C 1.50702 * 109.46639 * 179.97438 * 3 2 1 5 5 C 1.37474 * 122.45228 * 265.02523 * 4 3 2 6 6 C 1.36651 * 113.29876 * 179.97438 * 5 4 3 7 7 C 1.46574 * 125.45552 * 179.97438 * 6 5 4 8 8 O 1.21697 * 120.00213 * 28.35059 * 7 6 5 9 9 N 1.34782 * 119.99773 * 208.34603 * 7 6 5 10 10 C 1.46965 * 120.59090 * 7.58765 * 9 7 6 11 11 C 1.53816 * 108.39726 * 124.75827 * 10 9 7 12 12 N 1.46966 * 108.58221 * 49.63140 * 11 10 9 13 13 C 1.36936 * 120.58975 * 124.66556 * 12 11 10 14 14 H 1.08001 * 120.00055 * 219.91493 * 13 12 11 15 15 C 1.38813 * 120.00174 * 39.92979 * 13 12 11 16 16 N 1.31627 * 119.99508 * 326.12041 * 15 13 12 17 17 Si 1.86793 * 120.00407 * 146.12408 * 15 13 12 18 18 H 1.48499 * 109.47130 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47520 * 119.99774 * 17 15 13 20 20 H 1.48497 * 109.47196 * 239.99610 * 17 15 13 21 21 C 1.46962 * 118.81141 * 304.65132 * 12 11 10 22 22 C 1.46966 * 120.59332 * 187.86137 * 9 7 6 23 23 S 1.75832 * 109.08248 * 359.97438 * 6 5 4 24 24 C 1.33821 * 122.44573 * 85.00593 * 4 3 2 25 25 C 1.50698 * 124.52700 * 0.03673 * 24 4 3 26 26 H 1.08995 * 109.47249 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47404 * 299.99791 * 1 2 3 28 28 H 1.08998 * 109.47351 * 59.99925 * 1 2 3 29 29 H 1.09000 * 109.46699 * 240.00263 * 2 1 3 30 30 H 1.08998 * 109.47351 * 120.00075 * 2 1 3 31 31 H 1.09000 * 109.47320 * 60.00643 * 3 2 1 32 32 H 1.08998 * 109.47270 * 300.00124 * 3 2 1 33 33 H 1.07999 * 123.34792 * 0.24058 * 5 4 3 34 34 H 1.08999 * 109.60481 * 244.53260 * 10 9 7 35 35 H 1.08995 * 109.61582 * 5.04784 * 10 9 7 36 36 H 1.09004 * 109.73744 * 289.84469 * 11 10 9 37 37 H 1.08995 * 109.53098 * 169.30228 * 11 10 9 38 38 H 0.97000 * 119.99734 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.60705 * 295.47682 * 21 12 11 40 40 H 1.09001 * 109.60645 * 174.96783 * 21 12 11 41 41 H 1.08998 * 109.60939 * 354.95381 * 22 9 7 42 42 H 1.09004 * 109.60868 * 115.46490 * 22 9 7 43 43 H 1.08994 * 109.47305 * 179.97438 * 25 24 4 44 44 H 1.08999 * 109.47125 * 299.95551 * 25 24 4 45 45 H 1.08999 * 109.46760 * 59.95153 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2841 1.5433 1.1566 6 6 5.6333 1.5238 0.9407 7 6 6.6622 1.6148 1.9806 8 8 6.4286 1.2113 3.1047 9 7 7.8671 2.1454 1.6918 10 6 8.1100 2.7862 0.3918 11 6 8.6181 4.2161 0.6427 12 7 9.7143 4.1589 1.6200 13 6 10.9384 4.6979 1.3265 14 1 11.8402 4.1852 1.6269 15 6 11.0202 5.9034 0.6433 16 7 10.1199 6.2057 -0.2681 17 14 12.4080 7.0966 1.0170 18 1 13.2807 6.5254 2.0740 19 1 13.2066 7.3281 -0.2134 20 1 11.8396 8.3851 1.4878 21 6 9.4729 3.5131 2.9179 22 6 8.9632 2.0881 2.6691 23 16 5.9372 1.3721 -0.7845 24 6 4.2653 1.3440 -1.1241 25 6 3.6764 1.2239 -2.5060 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 3.8410 1.6251 2.1381 34 1 8.8602 2.2202 -0.1605 35 1 7.1816 2.8210 -0.1782 36 1 7.8086 4.8306 1.0366 37 1 8.9830 4.6425 -0.2917 38 1 10.1772 7.0479 -0.7459 39 1 8.7243 4.0776 3.4738 40 1 10.4024 3.4752 3.4860 41 1 8.5983 1.6617 3.6035 42 1 9.7728 1.4736 2.2752 43 1 4.4803 1.1600 -3.2393 44 1 3.0616 0.3256 -2.5621 45 1 3.0613 2.0989 -2.7161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265762768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:58 Heat of formation + Delta-G solvation = 14.708676 kcal Electronic energy + Delta-G solvation = -25163.319268 eV Core-core repulsion = 21693.908272 eV Total energy + Delta-G solvation = -3469.410996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.71302 -38.63110 -36.69677 -34.32723 -33.89110 -32.20612 -31.36472 -30.20553 -28.66801 -27.17705 -25.72213 -23.94693 -23.31355 -22.64299 -21.82067 -20.47628 -19.20451 -18.14932 -17.94040 -16.61208 -15.94517 -15.68113 -14.99690 -14.90561 -14.69073 -14.58920 -14.22121 -13.71466 -13.62261 -13.38572 -13.34213 -13.25724 -13.07173 -12.76174 -12.53930 -12.25694 -12.00057 -11.88608 -11.77113 -11.42360 -11.39310 -11.24327 -11.05429 -10.81166 -10.73450 -10.58434 -10.50707 -10.19167 -10.06350 -9.97197 -9.54763 -8.56950 -8.40014 -8.19448 -8.13040 -6.62252 -6.09951 -3.40704 0.67357 1.55990 1.99968 2.46453 3.29581 3.32565 3.43384 3.46386 3.55234 4.40544 4.68406 4.70543 4.83565 4.90827 4.99561 5.07833 5.09494 5.29417 5.33487 5.37285 5.44749 5.53753 5.62333 5.66145 5.74800 5.78483 5.82314 5.86226 5.89713 5.91510 6.02945 6.12027 6.12589 6.19130 6.35548 6.39074 6.44260 6.50918 6.77159 6.92872 7.19714 7.54726 7.82028 7.86506 8.42886 8.49335 9.09233 9.68052 10.33380 10.96250 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.003129 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.278655 B = 8946.077698 C = 9666.787701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.057 4.057 4 C -0.122 4.122 5 C -0.057 4.057 6 C -0.258 4.258 7 C 0.583 3.417 8 O -0.549 6.549 9 N -0.593 5.593 10 C 0.069 3.931 11 C 0.132 3.868 12 N -0.594 5.594 13 C -0.282 4.282 14 H 0.070 0.930 15 C 0.039 3.961 16 N -0.871 5.871 17 Si 0.873 3.127 18 H -0.275 1.275 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.135 3.865 22 C 0.096 3.904 23 S 0.231 5.769 24 C -0.222 4.222 25 C -0.080 4.080 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.146 0.854 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.014 0.986 37 H 0.137 0.863 38 H 0.260 0.740 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 -10.636 -4.510 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.096 4.096 4 C -0.134 4.134 5 C -0.090 4.090 6 C -0.378 4.378 7 C 0.370 3.630 8 O -0.430 6.430 9 N -0.324 5.324 10 C -0.056 4.056 11 C 0.006 3.994 12 N -0.317 5.317 13 C -0.410 4.410 14 H 0.088 0.912 15 C -0.163 4.163 16 N -0.512 5.512 17 Si 0.701 3.299 18 H -0.200 1.200 19 H -0.218 1.218 20 H -0.212 1.212 21 C 0.008 3.992 22 C -0.028 4.028 23 S 0.502 5.498 24 C -0.341 4.341 25 C -0.138 4.138 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.163 0.837 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.154 0.846 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.880 -10.773 -4.968 18.259 hybrid contribution -0.624 0.835 1.006 1.449 sum -14.504 -9.938 -3.962 18.023 Atomic orbital electron populations 1.21785 0.95811 1.01553 1.01794 1.21490 0.95386 0.96414 1.02378 1.20290 0.89534 0.97128 1.02686 1.18520 0.97067 1.06441 0.91391 1.20477 0.90901 0.98129 0.99470 1.24526 0.97993 1.17867 0.97397 1.17061 0.81340 0.78102 0.86508 1.90756 1.79750 1.50963 1.21515 1.47980 1.10791 1.55602 1.18047 1.23247 1.00168 0.99166 0.83068 1.22106 0.89939 0.89005 0.98381 1.43984 1.09927 1.67737 1.10100 1.18943 0.84285 1.00433 1.37338 0.91196 1.25417 0.96983 0.97047 0.96879 1.69794 1.37887 1.23241 1.20260 0.86715 0.82378 0.82215 0.78628 1.19969 1.21816 1.21215 1.21316 0.98562 0.90182 0.89172 1.22266 0.87989 1.00294 0.92246 1.83468 1.01444 1.66349 0.98510 1.24363 1.00477 1.09205 1.00077 1.20313 1.00675 1.02719 0.90094 0.92816 0.92681 0.92791 0.92010 0.91809 0.91114 0.91115 0.83665 0.91444 0.90858 0.96823 0.84565 0.92919 0.95654 0.91252 0.89870 0.91784 0.91487 0.90735 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 3 C -0.06 -0.54 5.11 -27.88 -0.14 -0.68 16 4 C -0.12 -1.48 5.04 -106.45 -0.54 -2.02 16 5 C -0.06 -0.83 9.89 -40.43 -0.40 -1.23 16 6 C -0.26 -4.23 5.79 -36.80 -0.21 -4.44 16 7 C 0.58 11.29 7.58 -12.90 -0.10 11.19 16 8 O -0.55 -11.88 16.39 5.19 0.09 -11.80 16 9 N -0.59 -11.51 2.94 -173.79 -0.51 -12.02 16 10 C 0.07 1.32 5.72 -3.36 -0.02 1.30 16 11 C 0.13 3.06 5.92 -3.36 -0.02 3.04 16 12 N -0.59 -14.51 2.98 -171.76 -0.51 -15.02 16 13 C -0.28 -7.43 9.36 -15.06 -0.14 -7.57 16 14 H 0.07 1.83 8.02 -52.49 -0.42 1.41 16 15 C 0.04 1.02 5.41 -17.43 -0.09 0.93 16 16 N -0.87 -23.50 10.56 55.49 0.59 -22.91 16 17 Si 0.87 20.47 29.66 -169.99 -5.04 15.43 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 C 0.13 2.85 6.67 -3.60 -0.02 2.82 16 22 C 0.10 1.82 6.60 -3.60 -0.02 1.80 16 23 S 0.23 3.13 19.15 -107.50 -2.06 1.07 16 24 C -0.22 -2.62 6.28 -35.86 -0.23 -2.84 16 25 C -0.08 -0.69 9.45 36.00 0.34 -0.35 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.51 7.41 -51.93 -0.38 0.13 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.07 0.60 7.45 -51.93 -0.39 0.21 16 33 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.28 3.85 -24.77 -0.10 1.18 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.14 3.46 5.34 -51.93 -0.28 3.18 16 38 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 41 H 0.08 1.54 7.00 -51.93 -0.36 1.17 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 44 H 0.07 0.55 7.41 -51.93 -0.38 0.17 16 45 H 0.08 0.59 7.92 -51.93 -0.41 0.18 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -29.67 367.70 -10.22 -39.89 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.92 Total: -0.27 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.39 Total: 0.09 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.44 Total: -49.95 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.04 Total: 15.43 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.06 Total: 1.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.67 -10.22 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265762768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.594 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds