Wall clock time and date at job start Tue Mar 31 2020 13:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46720 * 2 1 4 4 C 1.50702 * 109.46639 * 179.97438 * 3 2 1 5 5 C 1.37474 * 122.45228 * 265.02523 * 4 3 2 6 6 C 1.36651 * 113.29876 * 179.97438 * 5 4 3 7 7 C 1.46574 * 125.45552 * 179.97438 * 6 5 4 8 8 O 1.21697 * 120.00213 * 28.35059 * 7 6 5 9 9 N 1.34782 * 119.99773 * 208.34603 * 7 6 5 10 10 C 1.46965 * 120.59090 * 7.58765 * 9 7 6 11 11 C 1.53816 * 108.39726 * 124.75827 * 10 9 7 12 12 N 1.46966 * 108.58221 * 49.63140 * 11 10 9 13 13 C 1.36936 * 120.58975 * 124.66556 * 12 11 10 14 14 H 1.08001 * 120.00055 * 219.91493 * 13 12 11 15 15 C 1.38813 * 120.00174 * 39.92979 * 13 12 11 16 16 N 1.31627 * 119.99508 * 326.12041 * 15 13 12 17 17 Si 1.86793 * 120.00407 * 146.12408 * 15 13 12 18 18 H 1.48499 * 109.47130 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47520 * 119.99774 * 17 15 13 20 20 H 1.48497 * 109.47196 * 239.99610 * 17 15 13 21 21 C 1.46962 * 118.81141 * 304.65132 * 12 11 10 22 22 C 1.46966 * 120.59332 * 187.86137 * 9 7 6 23 23 S 1.75832 * 109.08248 * 359.97438 * 6 5 4 24 24 C 1.33821 * 122.44573 * 85.00593 * 4 3 2 25 25 C 1.50698 * 124.52700 * 0.03673 * 24 4 3 26 26 H 1.08995 * 109.47249 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47404 * 299.99791 * 1 2 3 28 28 H 1.08998 * 109.47351 * 59.99925 * 1 2 3 29 29 H 1.09000 * 109.46699 * 240.00263 * 2 1 3 30 30 H 1.08998 * 109.47351 * 120.00075 * 2 1 3 31 31 H 1.09000 * 109.47320 * 60.00643 * 3 2 1 32 32 H 1.08998 * 109.47270 * 300.00124 * 3 2 1 33 33 H 1.07999 * 123.34792 * 0.24058 * 5 4 3 34 34 H 1.08999 * 109.60481 * 244.53260 * 10 9 7 35 35 H 1.08995 * 109.61582 * 5.04784 * 10 9 7 36 36 H 1.09004 * 109.73744 * 289.84469 * 11 10 9 37 37 H 1.08995 * 109.53098 * 169.30228 * 11 10 9 38 38 H 0.97000 * 119.99734 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.60705 * 295.47682 * 21 12 11 40 40 H 1.09001 * 109.60645 * 174.96783 * 21 12 11 41 41 H 1.08998 * 109.60939 * 354.95381 * 22 9 7 42 42 H 1.09004 * 109.60868 * 115.46490 * 22 9 7 43 43 H 1.08994 * 109.47305 * 179.97438 * 25 24 4 44 44 H 1.08999 * 109.47125 * 299.95551 * 25 24 4 45 45 H 1.08999 * 109.46760 * 59.95153 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2841 1.5433 1.1566 6 6 5.6333 1.5238 0.9407 7 6 6.6622 1.6148 1.9806 8 8 6.4286 1.2113 3.1047 9 7 7.8671 2.1454 1.6918 10 6 8.1100 2.7862 0.3918 11 6 8.6181 4.2161 0.6427 12 7 9.7143 4.1589 1.6200 13 6 10.9384 4.6979 1.3265 14 1 11.8402 4.1852 1.6269 15 6 11.0202 5.9034 0.6433 16 7 10.1199 6.2057 -0.2681 17 14 12.4080 7.0966 1.0170 18 1 13.2807 6.5254 2.0740 19 1 13.2066 7.3281 -0.2134 20 1 11.8396 8.3851 1.4878 21 6 9.4729 3.5131 2.9179 22 6 8.9632 2.0881 2.6691 23 16 5.9372 1.3721 -0.7845 24 6 4.2653 1.3440 -1.1241 25 6 3.6764 1.2239 -2.5060 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 3.8410 1.6251 2.1381 34 1 8.8602 2.2202 -0.1605 35 1 7.1816 2.8210 -0.1782 36 1 7.8086 4.8306 1.0366 37 1 8.9830 4.6425 -0.2917 38 1 10.1772 7.0479 -0.7459 39 1 8.7243 4.0776 3.4738 40 1 10.4024 3.4752 3.4860 41 1 8.5983 1.6617 3.6035 42 1 9.7728 1.4736 2.2752 43 1 4.4803 1.1600 -3.2393 44 1 3.0616 0.3256 -2.5621 45 1 3.0613 2.0989 -2.7161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265762768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:57 Heat of formation + Delta-G solvation = -0.179867 kcal Electronic energy + Delta-G solvation = -25163.964884 eV Core-core repulsion = 21693.908272 eV Total energy + Delta-G solvation = -3470.056611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18155 -39.71140 -38.37037 -35.67731 -35.10223 -33.57196 -32.80790 -31.87252 -29.64136 -28.72565 -26.83557 -25.50519 -24.78644 -24.01534 -22.77246 -21.92191 -20.57369 -19.44479 -19.29114 -18.24872 -17.27505 -17.14471 -16.69884 -16.32714 -15.78692 -15.63733 -15.44924 -15.25034 -15.14731 -15.02753 -14.58280 -14.35859 -14.14445 -13.85579 -13.69255 -13.46446 -13.21607 -13.02011 -12.83639 -12.75274 -12.70035 -12.52811 -12.37368 -12.27140 -12.18375 -11.93513 -11.89714 -11.80678 -11.48820 -11.38148 -11.08016 -10.39630 -9.95513 -9.54816 -9.21991 -8.53856 -8.09087 -5.42579 -0.46284 0.44396 0.93357 1.35852 1.43994 1.52088 1.60742 1.85253 2.12046 2.47017 3.06044 3.46641 3.61433 3.85682 4.03920 4.12392 4.17334 4.20146 4.29214 4.31828 4.33140 4.49739 4.56237 4.57969 4.66124 4.70018 4.73448 4.77054 4.77956 4.92572 4.96932 5.04581 5.05796 5.11115 5.19894 5.22472 5.24269 5.45716 5.45838 5.51801 5.58644 5.61032 5.80763 6.32596 6.45700 6.97552 7.11347 7.73713 8.36754 8.96136 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.003129 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.278655 B = 8946.077698 C = 9666.787701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.054 4.054 4 C -0.132 4.132 5 C -0.049 4.049 6 C -0.303 4.303 7 C 0.582 3.418 8 O -0.580 6.580 9 N -0.599 5.599 10 C 0.085 3.915 11 C 0.137 3.863 12 N -0.611 5.611 13 C -0.296 4.296 14 H 0.069 0.931 15 C -0.006 4.006 16 N -0.894 5.894 17 Si 0.938 3.062 18 H -0.270 1.270 19 H -0.289 1.289 20 H -0.292 1.292 21 C 0.136 3.864 22 C 0.103 3.897 23 S 0.236 5.764 24 C -0.201 4.201 25 C -0.083 4.083 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.072 0.928 35 H 0.094 0.906 36 H -0.010 1.010 37 H 0.116 0.884 38 H 0.260 0.740 39 H 0.013 0.987 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.393 -11.303 -5.932 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.084 4.084 6 C -0.423 4.423 7 C 0.371 3.629 8 O -0.464 6.464 9 N -0.330 5.330 10 C -0.040 4.040 11 C 0.011 3.989 12 N -0.335 5.335 13 C -0.424 4.424 14 H 0.086 0.914 15 C -0.206 4.206 16 N -0.535 5.535 17 Si 0.765 3.235 18 H -0.194 1.194 19 H -0.216 1.216 20 H -0.219 1.219 21 C 0.010 3.990 22 C -0.021 4.021 23 S 0.507 5.493 24 C -0.321 4.321 25 C -0.141 4.141 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.008 0.992 37 H 0.134 0.866 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.158 -11.449 -6.388 20.041 hybrid contribution -0.326 1.015 1.404 1.763 sum -15.484 -10.434 -4.984 19.325 Atomic orbital electron populations 1.21761 0.94535 1.02086 1.02294 1.21461 0.96449 0.95539 1.01943 1.20356 0.87353 0.98019 1.03598 1.18742 0.98606 1.06457 0.90510 1.20700 0.90607 0.96644 1.00400 1.24340 0.97843 1.21656 0.98450 1.17442 0.81497 0.77126 0.86792 1.90718 1.80290 1.52299 1.23046 1.48030 1.11125 1.55795 1.18030 1.22995 1.01247 0.96460 0.83327 1.21858 0.88982 0.91054 0.97051 1.44191 1.09575 1.68300 1.11420 1.19140 0.85003 1.01044 1.37246 0.91354 1.26011 0.99555 0.98213 0.96840 1.69917 1.39538 1.23350 1.20730 0.85719 0.79828 0.79679 0.78263 1.19421 1.21566 1.21855 1.21362 0.98841 0.90911 0.87908 1.22153 0.88321 0.98891 0.92736 1.83303 1.03230 1.66467 0.96310 1.24793 0.99090 1.06495 1.01684 1.20517 1.01391 1.04357 0.87875 0.92315 0.92755 0.91740 0.91520 0.93221 0.91080 0.89365 0.84030 0.91012 0.88886 0.99175 0.86616 0.93006 0.96882 0.90166 0.89333 0.90782 0.90533 0.88760 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.97 16 2 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 3 C -0.05 -0.88 5.11 29.85 0.15 -0.73 16 4 C -0.13 -2.96 5.04 -21.05 -0.11 -3.07 16 5 C -0.05 -1.42 9.89 21.72 0.21 -1.21 16 6 C -0.30 -9.92 5.79 24.07 0.14 -9.78 16 7 C 0.58 22.86 7.58 86.42 0.66 23.51 16 8 O -0.58 -25.64 16.39 -4.34 -0.07 -25.72 16 9 N -0.60 -23.47 2.94 -821.97 -2.42 -25.89 16 10 C 0.08 3.27 5.72 86.57 0.50 3.77 16 11 C 0.14 6.50 5.92 86.57 0.51 7.01 16 12 N -0.61 -30.31 2.98 -697.34 -2.08 -32.39 16 13 C -0.30 -15.71 9.36 84.03 0.79 -14.93 16 14 H 0.07 3.59 8.02 -2.91 -0.02 3.56 16 15 C -0.01 -0.34 5.41 84.86 0.46 0.12 16 16 N -0.89 -48.89 10.56 21.65 0.23 -48.66 16 17 Si 0.94 42.45 29.66 68.60 2.04 44.49 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 21 C 0.14 5.82 6.67 86.42 0.58 6.40 16 22 C 0.10 3.93 6.60 86.41 0.57 4.50 16 23 S 0.24 6.09 19.15 -56.49 -1.08 5.01 16 24 C -0.20 -4.23 6.28 24.68 0.15 -4.07 16 25 C -0.08 -1.11 9.45 71.24 0.67 -0.43 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.90 7.41 -2.39 -0.02 0.88 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 32 H 0.09 1.15 7.45 -2.39 -0.02 1.14 16 33 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 34 H 0.07 2.70 8.14 -2.39 -0.02 2.69 16 35 H 0.09 3.22 3.85 -19.66 -0.08 3.15 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 37 H 0.12 6.04 5.34 -2.39 -0.01 6.03 16 38 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 39 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.08 3.19 7.93 -2.39 -0.02 3.18 16 41 H 0.09 3.30 7.00 -2.39 -0.02 3.28 16 42 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.08 0.92 8.11 -2.39 -0.02 0.90 16 44 H 0.09 0.97 7.41 -2.39 -0.02 0.95 16 45 H 0.09 1.02 7.92 -2.39 -0.02 1.00 16 Total: -1.00 -64.20 367.70 3.70 -60.50 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.91 Total: 14.03 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.18 Total: 8.63 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -4.27 Total: -106.93 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.07 Total: -25.72 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.04 Total: 44.49 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.08 Total: 5.01 kcal Total: -64.20 3.70 -60.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265762768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.315 kcal (2) G-P(sol) polarization free energy of solvation -64.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds