Wall clock time and date at job start Tue Mar 31 2020 13:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47210 * 2 1 4 4 C 1.37480 * 123.35201 * 264.98077 * 3 2 1 5 5 C 1.33817 * 115.09906 * 180.02562 * 4 3 2 6 6 S 1.70620 * 110.95652 * 359.71653 * 5 4 3 7 7 C 1.36645 * 123.35397 * 84.99819 * 3 2 1 8 8 C 1.46581 * 125.45576 * 359.97438 * 7 3 2 9 9 O 1.21704 * 120.00016 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00176 * 179.97438 * 8 7 3 11 11 C 1.46500 * 120.00207 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47239 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.52207 * 54.92167 * 12 11 10 14 14 C 1.53043 * 109.49688 * 175.00376 * 12 11 10 15 15 C 1.53038 * 109.52508 * 181.31028 * 14 12 11 16 16 C 1.53190 * 109.31596 * 298.64270 * 15 14 12 17 17 N 1.46930 * 108.77590 * 54.63239 * 16 15 14 18 18 C 1.36937 * 120.62835 * 126.41690 * 17 16 15 19 19 H 1.08000 * 120.00009 * 332.75357 * 18 17 16 20 20 C 1.38818 * 119.99757 * 152.75359 * 18 17 16 21 21 N 1.31617 * 119.99632 * 159.73207 * 20 18 17 22 22 Si 1.86797 * 120.00114 * 339.73800 * 20 18 17 23 23 H 1.48500 * 109.47328 * 94.89426 * 22 20 18 24 24 H 1.48498 * 109.46869 * 214.89560 * 22 20 18 25 25 H 1.48501 * 109.46788 * 334.89001 * 22 20 18 26 26 C 1.46924 * 118.74023 * 306.39571 * 17 16 15 27 27 H 1.08999 * 109.47344 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46703 * 300.00019 * 1 2 3 29 29 H 1.08999 * 109.47125 * 59.99544 * 1 2 3 30 30 H 1.08998 * 109.46703 * 239.99981 * 2 1 3 31 31 H 1.08992 * 109.46978 * 120.00063 * 2 1 3 32 32 H 1.07998 * 122.44621 * 359.97438 * 4 3 2 33 33 H 1.08002 * 124.52213 * 180.02562 * 5 4 3 34 34 H 0.97004 * 119.99764 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.46814 * 60.00455 * 11 10 8 36 36 H 1.09000 * 109.47333 * 300.00832 * 11 10 8 37 37 H 1.08996 * 109.46161 * 61.30050 * 14 12 11 38 38 H 1.09000 * 109.45926 * 301.32049 * 14 12 11 39 39 H 1.09006 * 109.50129 * 58.59002 * 15 14 12 40 40 H 1.08997 * 109.50315 * 178.68833 * 15 14 12 41 41 H 1.08994 * 109.59201 * 174.42226 * 16 15 14 42 42 H 1.09006 * 109.58386 * 294.84769 * 16 15 14 43 43 H 0.97002 * 120.00087 * 179.97438 * 21 20 18 44 44 H 1.08992 * 109.58903 * 173.39493 * 26 17 16 45 45 H 1.09007 * 109.58986 * 293.67957 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3791 2.0999 -1.1440 5 6 2.8052 3.3539 -0.9526 6 16 2.7861 3.7586 0.7048 7 6 2.1890 2.1623 1.1370 8 6 1.8995 1.7026 2.4985 9 8 1.4824 0.5745 2.6841 10 7 2.0953 2.5293 3.5448 11 6 1.8055 2.0701 4.9054 12 6 2.1107 3.1932 5.8986 13 1 1.5595 4.0899 5.6152 14 6 1.6917 2.7592 7.3051 15 6 1.9665 3.8944 8.2939 16 6 3.4674 4.2008 8.3092 17 7 3.9076 4.4776 6.9350 18 6 4.5800 5.6328 6.6372 19 1 4.4252 6.5176 7.2368 20 6 5.4607 5.6664 5.5646 21 7 5.7980 6.8190 5.0261 22 14 6.1667 4.0758 4.8856 23 1 5.3413 3.6174 3.7393 24 1 7.5609 4.3079 4.4302 25 1 6.1591 3.0379 5.9476 26 6 3.6130 3.4914 5.8866 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.3131 1.6536 -2.1252 33 1 3.1148 4.0224 -1.7423 34 1 2.4274 3.4286 3.3968 35 1 2.4243 1.2029 5.1357 36 1 0.7532 1.7956 4.9799 37 1 2.2611 1.8770 7.5977 38 1 0.6276 2.5228 7.3103 39 1 1.4167 4.7845 7.9880 40 1 1.6465 3.5936 9.2915 41 1 3.6562 5.0723 8.9359 42 1 4.0117 3.3415 8.7011 43 1 6.4136 6.8425 4.2768 44 1 3.8977 3.8948 4.9150 45 1 4.1711 2.5751 6.0795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266059392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:08 Heat of formation + Delta-G solvation = 3.315104 kcal Electronic energy + Delta-G solvation = -25591.001095 eV Core-core repulsion = 22121.096037 eV Total energy + Delta-G solvation = -3469.905058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.93262 -38.47465 -37.66838 -34.83575 -33.14535 -32.77748 -31.32746 -30.63915 -29.32622 -26.19261 -25.32992 -24.85259 -22.62624 -22.42479 -21.35856 -20.88329 -19.52012 -18.75595 -18.14225 -16.88070 -16.04773 -15.76734 -15.56923 -15.19779 -14.84418 -14.29920 -14.12717 -14.03111 -13.72928 -13.52724 -13.33323 -13.30226 -13.06000 -12.83935 -12.47673 -12.35777 -12.10093 -11.96909 -11.64132 -11.53051 -11.48518 -11.08309 -10.82163 -10.73301 -10.61856 -10.53353 -10.15020 -9.97136 -9.76010 -9.72366 -9.48537 -9.08203 -8.76178 -8.66343 -8.52561 -7.01500 -5.99602 -3.35218 0.46935 1.44837 1.85136 2.30839 3.22599 3.25542 3.28907 3.45358 3.47746 4.47282 4.71153 4.76081 4.85789 5.04269 5.12129 5.15082 5.22065 5.28725 5.30422 5.40305 5.41376 5.59056 5.60848 5.68427 5.78304 5.82705 5.91686 5.96259 6.01028 6.07780 6.10277 6.18314 6.27555 6.28873 6.32154 6.41414 6.50021 6.53330 6.55983 6.66460 6.69563 6.94285 7.55629 7.91553 8.23902 8.28583 8.89756 9.67430 10.05845 11.16196 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.004539 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.854055 B = 6167.865406 C = 7619.233364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 C -0.022 4.022 4 C -0.150 4.150 5 C -0.231 4.231 6 S 0.213 5.787 7 C -0.273 4.273 8 C 0.590 3.410 9 O -0.531 6.531 10 N -0.722 5.722 11 C 0.128 3.872 12 C -0.121 4.121 13 H 0.080 0.920 14 C -0.100 4.100 15 C -0.135 4.135 16 C 0.146 3.854 17 N -0.606 5.606 18 C -0.260 4.260 19 H 0.087 0.913 20 C 0.025 3.975 21 N -0.907 5.907 22 Si 0.875 3.125 23 H -0.287 1.287 24 H -0.302 1.302 25 H -0.271 1.271 26 C 0.134 3.866 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.143 0.857 33 H 0.169 0.831 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.068 0.932 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 -9.626 -8.949 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 C -0.038 4.038 4 C -0.181 4.181 5 C -0.369 4.369 6 S 0.482 5.518 7 C -0.394 4.394 8 C 0.377 3.623 9 O -0.410 6.410 10 N -0.374 5.374 11 C 0.004 3.996 12 C -0.141 4.141 13 H 0.099 0.901 14 C -0.138 4.138 15 C -0.174 4.174 16 C 0.020 3.980 17 N -0.329 5.329 18 C -0.388 4.388 19 H 0.104 0.896 20 C -0.174 4.174 21 N -0.550 5.550 22 Si 0.705 3.295 23 H -0.215 1.215 24 H -0.231 1.231 25 H -0.196 1.196 26 C 0.008 3.992 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.186 0.814 34 H 0.237 0.763 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.607 -8.943 -8.055 15.400 hybrid contribution 0.473 -1.456 -1.617 2.227 sum -9.134 -10.399 -9.672 16.885 Atomic orbital electron populations 1.21594 0.94390 1.01593 1.01737 1.20392 0.96443 0.90668 1.03474 1.19486 0.96485 0.97401 0.90385 1.19878 1.04395 0.94278 0.99561 1.25309 1.07948 1.01458 1.02181 1.83579 1.59156 1.10635 0.98402 1.24510 1.17153 1.00048 0.97663 1.16893 0.77719 0.84951 0.82783 1.90757 1.46319 1.18745 1.85220 1.46009 1.67301 1.17174 1.06888 1.21484 1.00798 0.97635 0.79675 1.21992 1.00293 0.97394 0.94448 0.90136 1.21337 0.99937 0.98499 0.94052 1.21990 0.99353 0.98282 0.97737 1.20961 0.91559 0.98661 0.86772 1.44342 1.65374 1.21045 1.02139 1.18957 1.17814 0.87838 1.14190 0.89562 1.25252 0.97942 0.96092 0.98090 1.69828 1.36700 1.24204 1.24220 0.87077 0.78267 0.85362 0.78775 1.21479 1.23061 1.19557 1.21364 0.91568 0.92766 0.93529 0.92468 0.92192 0.93318 0.91473 0.88753 0.83960 0.81380 0.76322 0.91409 0.91359 0.92281 0.92698 0.91925 0.92540 0.91895 0.95997 0.92762 0.91399 0.95519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.78 37.16 0.36 -1.14 16 2 C -0.07 -0.84 5.50 -27.88 -0.15 -1.00 16 3 C -0.02 -0.29 5.16 -105.48 -0.54 -0.83 16 4 C -0.15 -1.66 9.96 -41.41 -0.41 -2.07 16 5 C -0.23 -2.53 10.92 29.18 0.32 -2.21 16 6 S 0.21 2.85 22.16 -107.50 -2.38 0.47 16 7 C -0.27 -4.06 6.45 -36.79 -0.24 -4.30 16 8 C 0.59 9.76 7.78 -12.90 -0.10 9.66 16 9 O -0.53 -9.49 13.71 5.19 0.07 -9.42 16 10 N -0.72 -11.77 5.33 -61.65 -0.33 -12.10 16 11 C 0.13 1.98 5.07 -4.04 -0.02 1.96 16 12 C -0.12 -2.02 2.37 -90.51 -0.21 -2.23 16 13 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 14 C -0.10 -1.47 5.17 -26.69 -0.14 -1.61 16 15 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 16 C 0.15 2.79 6.52 -3.71 -0.02 2.77 16 17 N -0.61 -13.98 2.77 -172.33 -0.48 -14.46 16 18 C -0.26 -7.07 10.04 -15.06 -0.15 -7.23 16 19 H 0.09 2.51 8.05 -52.49 -0.42 2.09 16 20 C 0.03 0.71 5.24 -17.43 -0.09 0.62 16 21 N -0.91 -26.98 13.97 55.49 0.78 -26.21 16 22 Si 0.87 22.00 24.34 -169.99 -4.14 17.87 16 23 H -0.29 -6.84 6.70 56.52 0.38 -6.46 16 24 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 25 H -0.27 -6.81 6.45 56.52 0.36 -6.44 16 26 C 0.13 2.80 3.28 -3.72 -0.01 2.79 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.78 7.60 -51.93 -0.39 0.39 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.09 1.32 6.33 -51.93 -0.33 0.99 16 32 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.40 6.61 6.82 -40.82 -0.28 6.33 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.07 1.54 3.71 -51.93 -0.19 1.35 16 45 H 0.03 0.58 6.97 -51.92 -0.36 0.22 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -30.88 363.24 -9.67 -40.55 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.08 Total: 4.90 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.58 Total: -7.07 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.03 Total: -52.76 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.87 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.38 Total: 0.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.88 -9.67 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266059392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.863 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds