Wall clock time and date at job start Tue Mar 31 2020 13:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47210 * 2 1 4 4 C 1.37480 * 123.35201 * 264.98077 * 3 2 1 5 5 C 1.33817 * 115.09906 * 180.02562 * 4 3 2 6 6 S 1.70620 * 110.95652 * 359.71653 * 5 4 3 7 7 C 1.36645 * 123.35397 * 84.99819 * 3 2 1 8 8 C 1.46581 * 125.45576 * 359.97438 * 7 3 2 9 9 O 1.21704 * 120.00016 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00176 * 179.97438 * 8 7 3 11 11 C 1.46500 * 120.00207 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47239 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.52207 * 54.92167 * 12 11 10 14 14 C 1.53043 * 109.49688 * 175.00376 * 12 11 10 15 15 C 1.53038 * 109.52508 * 181.31028 * 14 12 11 16 16 C 1.53190 * 109.31596 * 298.64270 * 15 14 12 17 17 N 1.46930 * 108.77590 * 54.63239 * 16 15 14 18 18 C 1.36937 * 120.62835 * 126.41690 * 17 16 15 19 19 H 1.08000 * 120.00009 * 332.75357 * 18 17 16 20 20 C 1.38818 * 119.99757 * 152.75359 * 18 17 16 21 21 N 1.31617 * 119.99632 * 159.73207 * 20 18 17 22 22 Si 1.86797 * 120.00114 * 339.73800 * 20 18 17 23 23 H 1.48500 * 109.47328 * 94.89426 * 22 20 18 24 24 H 1.48498 * 109.46869 * 214.89560 * 22 20 18 25 25 H 1.48501 * 109.46788 * 334.89001 * 22 20 18 26 26 C 1.46924 * 118.74023 * 306.39571 * 17 16 15 27 27 H 1.08999 * 109.47344 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46703 * 300.00019 * 1 2 3 29 29 H 1.08999 * 109.47125 * 59.99544 * 1 2 3 30 30 H 1.08998 * 109.46703 * 239.99981 * 2 1 3 31 31 H 1.08992 * 109.46978 * 120.00063 * 2 1 3 32 32 H 1.07998 * 122.44621 * 359.97438 * 4 3 2 33 33 H 1.08002 * 124.52213 * 180.02562 * 5 4 3 34 34 H 0.97004 * 119.99764 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.46814 * 60.00455 * 11 10 8 36 36 H 1.09000 * 109.47333 * 300.00832 * 11 10 8 37 37 H 1.08996 * 109.46161 * 61.30050 * 14 12 11 38 38 H 1.09000 * 109.45926 * 301.32049 * 14 12 11 39 39 H 1.09006 * 109.50129 * 58.59002 * 15 14 12 40 40 H 1.08997 * 109.50315 * 178.68833 * 15 14 12 41 41 H 1.08994 * 109.59201 * 174.42226 * 16 15 14 42 42 H 1.09006 * 109.58386 * 294.84769 * 16 15 14 43 43 H 0.97002 * 120.00087 * 179.97438 * 21 20 18 44 44 H 1.08992 * 109.58903 * 173.39493 * 26 17 16 45 45 H 1.09007 * 109.58986 * 293.67957 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3791 2.0999 -1.1440 5 6 2.8052 3.3539 -0.9526 6 16 2.7861 3.7586 0.7048 7 6 2.1890 2.1623 1.1370 8 6 1.8995 1.7026 2.4985 9 8 1.4824 0.5745 2.6841 10 7 2.0953 2.5293 3.5448 11 6 1.8055 2.0701 4.9054 12 6 2.1107 3.1932 5.8986 13 1 1.5595 4.0899 5.6152 14 6 1.6917 2.7592 7.3051 15 6 1.9665 3.8944 8.2939 16 6 3.4674 4.2008 8.3092 17 7 3.9076 4.4776 6.9350 18 6 4.5800 5.6328 6.6372 19 1 4.4252 6.5176 7.2368 20 6 5.4607 5.6664 5.5646 21 7 5.7980 6.8190 5.0261 22 14 6.1667 4.0758 4.8856 23 1 5.3413 3.6174 3.7393 24 1 7.5609 4.3079 4.4302 25 1 6.1591 3.0379 5.9476 26 6 3.6130 3.4914 5.8866 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.3131 1.6536 -2.1252 33 1 3.1148 4.0224 -1.7423 34 1 2.4274 3.4286 3.3968 35 1 2.4243 1.2029 5.1357 36 1 0.7532 1.7956 4.9799 37 1 2.2611 1.8770 7.5977 38 1 0.6276 2.5228 7.3103 39 1 1.4167 4.7845 7.9880 40 1 1.6465 3.5936 9.2915 41 1 3.6562 5.0723 8.9359 42 1 4.0117 3.3415 8.7011 43 1 6.4136 6.8425 4.2768 44 1 3.8977 3.8948 4.9150 45 1 4.1711 2.5751 6.0795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266059392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:07 Heat of formation + Delta-G solvation = -15.545925 kcal Electronic energy + Delta-G solvation = -25591.818971 eV Core-core repulsion = 22121.096037 eV Total energy + Delta-G solvation = -3470.722934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13111 -39.80102 -38.85151 -36.25921 -34.86855 -33.68907 -32.97453 -32.24401 -30.40517 -27.44595 -27.13555 -25.95516 -24.19051 -23.34472 -22.73053 -22.17545 -20.98421 -19.90274 -19.15568 -18.83868 -17.45369 -16.98493 -16.91391 -16.57178 -15.94483 -15.90650 -15.52018 -15.13385 -15.06541 -14.89201 -14.65311 -14.59920 -14.47964 -13.98254 -13.95647 -13.57876 -13.38521 -13.32350 -13.08401 -12.87609 -12.59682 -12.42501 -12.22132 -12.11624 -12.01913 -11.71159 -11.66885 -11.59499 -11.37908 -11.28659 -10.97638 -10.67981 -10.29736 -9.80064 -9.52389 -8.93633 -8.18167 -5.48823 -0.52909 0.45149 0.90936 1.23873 1.35765 1.37015 1.43513 2.05048 2.10388 2.36636 3.02218 3.30690 3.69899 3.81376 3.84807 3.89276 3.95449 4.12535 4.27422 4.29711 4.43056 4.44722 4.46897 4.51854 4.57574 4.69234 4.74055 4.74628 4.84766 4.88546 4.96251 5.02157 5.07489 5.09422 5.16096 5.22162 5.28990 5.29902 5.32924 5.43710 5.49699 5.58024 5.86235 6.12188 6.29732 6.90806 6.99753 7.61395 8.02710 9.01606 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.004539 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.854055 B = 6167.865406 C = 7619.233364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 C -0.016 4.016 4 C -0.152 4.152 5 C -0.210 4.210 6 S 0.173 5.827 7 C -0.307 4.307 8 C 0.587 3.413 9 O -0.552 6.552 10 N -0.728 5.728 11 C 0.133 3.867 12 C -0.108 4.108 13 H 0.073 0.927 14 C -0.097 4.097 15 C -0.125 4.125 16 C 0.137 3.863 17 N -0.620 5.620 18 C -0.248 4.248 19 H 0.056 0.944 20 C -0.023 4.023 21 N -0.950 5.950 22 Si 0.931 3.069 23 H -0.272 1.272 24 H -0.312 1.312 25 H -0.270 1.270 26 C 0.132 3.868 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.177 0.823 33 H 0.200 0.800 34 H 0.399 0.601 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.047 0.953 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -11.722 -10.210 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 C -0.033 4.033 4 C -0.182 4.182 5 C -0.347 4.347 6 S 0.442 5.558 7 C -0.427 4.427 8 C 0.375 3.625 9 O -0.433 6.433 10 N -0.379 5.379 11 C 0.010 3.990 12 C -0.128 4.128 13 H 0.091 0.909 14 C -0.135 4.135 15 C -0.163 4.163 16 C 0.013 3.987 17 N -0.345 5.345 18 C -0.378 4.378 19 H 0.074 0.926 20 C -0.219 4.219 21 N -0.596 5.596 22 Si 0.760 3.240 23 H -0.198 1.198 24 H -0.241 1.241 25 H -0.194 1.194 26 C 0.006 3.994 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.194 0.806 33 H 0.217 0.783 34 H 0.234 0.766 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.017 -11.072 -9.290 18.174 hybrid contribution 0.869 -0.777 -1.210 1.680 sum -10.149 -11.849 -10.500 18.805 Atomic orbital electron populations 1.21547 0.93722 1.02317 1.01185 1.20436 0.96960 0.90042 1.03608 1.19878 0.95001 0.97795 0.90593 1.20187 1.03693 0.94110 1.00234 1.25678 1.06212 1.01818 1.01002 1.83728 1.60200 1.10758 1.01127 1.24451 1.19833 1.01020 0.97377 1.17164 0.77216 0.84658 0.83499 1.90733 1.47428 1.19427 1.85707 1.46102 1.67387 1.17089 1.07277 1.21459 1.01680 0.96785 0.79098 1.21820 0.96767 0.97693 0.96542 0.90882 1.21373 1.02020 0.98226 0.91913 1.21891 0.96046 0.98402 0.99999 1.21195 0.94324 0.98703 0.84506 1.44497 1.65329 1.20226 1.04419 1.18915 1.17360 0.88521 1.13000 0.92612 1.25732 0.98767 0.98366 0.99011 1.69935 1.38146 1.26096 1.25449 0.86161 0.76975 0.82120 0.78700 1.19842 1.24117 1.19448 1.21350 0.94569 0.91613 0.91827 0.91151 0.94761 0.91741 0.88696 0.91182 0.80594 0.78289 0.76640 0.91714 0.89677 0.91431 0.89550 0.92824 0.89106 0.92721 0.95017 0.92902 0.93526 0.95854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.78 71.98 0.70 -1.95 16 2 C -0.07 -1.57 5.50 29.85 0.16 -1.41 16 3 C -0.02 -0.40 5.16 -20.42 -0.11 -0.51 16 4 C -0.15 -2.88 9.96 21.09 0.21 -2.67 16 5 C -0.21 -4.03 10.92 66.81 0.73 -3.30 16 6 S 0.17 4.54 22.16 -56.49 -1.25 3.29 16 7 C -0.31 -8.98 6.45 24.08 0.16 -8.83 16 8 C 0.59 19.42 7.78 86.42 0.67 20.09 16 9 O -0.55 -19.73 13.71 -4.36 -0.06 -19.79 16 10 N -0.73 -23.64 5.33 -467.17 -2.49 -26.13 16 11 C 0.13 3.97 5.07 86.38 0.44 4.40 16 12 C -0.11 -3.45 2.37 -10.72 -0.03 -3.48 16 13 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 14 C -0.10 -2.56 5.17 30.62 0.16 -2.40 16 15 C -0.12 -3.55 6.08 30.67 0.19 -3.36 16 16 C 0.14 5.10 6.52 86.36 0.56 5.66 16 17 N -0.62 -28.66 2.77 -699.14 -1.94 -30.60 16 18 C -0.25 -13.90 10.04 84.03 0.84 -13.05 16 19 H 0.06 3.40 8.05 -2.91 -0.02 3.38 16 20 C -0.02 -1.35 5.24 84.86 0.44 -0.91 16 21 N -0.95 -58.48 13.97 21.65 0.30 -58.18 16 22 Si 0.93 46.58 24.34 68.60 1.67 48.25 16 23 H -0.27 -12.76 6.70 99.48 0.67 -12.09 16 24 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 25 H -0.27 -13.27 6.45 99.48 0.64 -12.62 16 26 C 0.13 5.45 3.28 86.35 0.28 5.74 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 28 H 0.03 0.86 7.60 -2.39 -0.02 0.85 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 31 H 0.07 1.92 6.33 -2.39 -0.02 1.91 16 32 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.40 13.36 6.82 -92.71 -0.63 12.72 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 42 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 44 H 0.05 2.13 3.71 -2.39 -0.01 2.12 16 45 H 0.02 0.99 6.97 -2.38 -0.02 0.98 16 Total: -1.00 -69.15 363.24 1.91 -67.25 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.25 Total: 21.87 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.42 Total: -5.96 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -4.12 Total: -114.91 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.06 Total: -19.79 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.25 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.25 Total: 3.29 kcal Total: -69.15 1.91 -67.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266059392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.703 kcal (2) G-P(sol) polarization free energy of solvation -69.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds