Wall clock time and date at job start Tue Mar 31 2020 12:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47134 * 50.04567 * 3 2 1 5 5 C 1.36652 * 119.99895 * 264.76938 * 4 3 2 6 6 H 1.08003 * 119.99903 * 200.81352 * 5 4 3 7 7 C 1.39189 * 119.99715 * 20.81747 * 5 4 3 8 8 N 1.31269 * 120.00610 * 11.96435 * 7 5 4 9 9 Si 1.86800 * 119.99696 * 191.96208 * 7 5 4 10 10 H 1.48505 * 109.47295 * 84.98440 * 9 7 5 11 11 H 1.48509 * 109.47258 * 204.98298 * 9 7 5 12 12 H 1.48500 * 109.47439 * 324.98325 * 9 7 5 13 13 C 1.34777 * 119.99811 * 84.77425 * 4 3 2 14 14 O 1.21613 * 120.00015 * 180.02562 * 13 4 3 15 15 C 1.47677 * 120.00411 * 359.97438 * 13 4 3 16 16 C 1.39060 * 121.12543 * 270.00608 * 15 13 4 17 17 C 1.50706 * 120.21338 * 0.02562 * 16 15 13 18 18 C 1.39159 * 119.57119 * 179.71933 * 16 15 13 19 19 C 1.50703 * 119.05416 * 180.25068 * 18 16 15 20 20 C 1.53002 * 109.46743 * 90.00063 * 19 18 16 21 21 N 1.31050 * 121.89855 * 0.28126 * 18 16 15 22 22 C 1.33563 * 121.84916 * 359.96641 * 21 18 16 23 23 C 1.40702 * 120.95885 * 180.02562 * 22 21 18 24 24 C 1.36083 * 119.73969 * 179.97438 * 23 22 21 25 25 C 1.39323 * 121.04581 * 0.03577 * 24 23 22 26 26 C 1.36279 * 120.83133 * 359.96360 * 25 24 23 27 27 C 1.40047 * 119.64850 * 0.02562 * 26 25 24 28 28 H 4.40641 * 5.51471 * 179.97438 * 4 1 2 29 29 H 1.08996 * 109.47646 * 290.04350 * 3 2 1 30 30 H 1.09002 * 109.46692 * 170.04119 * 3 2 1 31 31 H 0.96995 * 119.99958 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46580 * 269.72189 * 17 16 15 33 33 H 1.08997 * 109.47015 * 149.72408 * 17 16 15 34 34 H 1.09003 * 109.47164 * 29.72045 * 17 16 15 35 35 H 1.08989 * 109.47451 * 210.00427 * 19 18 16 36 36 H 1.09001 * 109.46935 * 330.00451 * 19 18 16 37 37 H 1.08994 * 109.47478 * 299.99908 * 20 19 18 38 38 H 1.08995 * 109.46659 * 60.00571 * 20 19 18 39 39 H 1.09007 * 109.46862 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.13119 * 359.96050 * 23 22 21 41 41 H 1.07999 * 119.47717 * 180.02562 * 24 23 22 42 42 H 1.07997 * 119.58422 * 179.97438 * 25 24 23 43 43 H 1.08007 * 120.17543 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8861 -1.0588 5 6 3.4648 -2.1800 -0.7682 6 1 4.1221 -2.7302 -1.4252 7 6 2.9538 -2.7886 0.3745 8 7 1.9807 -2.2159 1.0440 9 14 3.6526 -4.4208 0.9552 10 1 4.8524 -4.1748 1.7951 11 1 2.6288 -5.1417 1.7536 12 1 4.0323 -5.2434 -0.2213 13 6 3.2589 -0.4258 -2.3194 14 8 3.6642 -1.1620 -3.1985 15 6 2.9018 0.9723 -2.6336 16 6 1.6106 1.3150 -3.0198 17 6 0.5440 0.2555 -3.1247 18 6 1.3082 2.6435 -3.3027 19 6 -0.0962 3.0027 -3.7147 20 6 -0.9221 3.3388 -2.4714 21 7 2.2096 3.5913 -3.2217 22 6 3.4704 3.3360 -2.8622 23 6 4.4230 4.3683 -2.7809 24 6 5.7007 4.0802 -2.4115 25 6 6.0850 2.7751 -2.1115 26 6 5.1894 1.7501 -2.1796 27 6 3.8659 2.0105 -2.5561 28 1 -1.0499 -0.0003 -0.0001 29 1 3.0096 -0.3514 0.9654 30 1 3.0088 1.0130 -0.1777 31 1 1.6249 -2.6400 1.8405 32 1 0.5362 -0.1534 -4.1351 33 1 -0.4283 0.6956 -2.9033 34 1 0.7527 -0.5421 -2.4116 35 1 -0.0704 3.8669 -4.3783 36 1 -0.5494 2.1587 -4.2347 37 1 -0.9480 2.4746 -1.8078 38 1 -0.4690 4.1828 -1.9515 39 1 -1.9381 3.5982 -2.7694 40 1 4.1414 5.3852 -3.0109 41 1 6.4283 4.8759 -2.3500 42 1 7.1054 2.5731 -1.8213 43 1 5.4989 0.7423 -1.9452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281564038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:20 Heat of formation + Delta-G solvation = 82.197082 kcal Electronic energy + Delta-G solvation = -27758.408606 eV Core-core repulsion = 24156.480176 eV Total energy + Delta-G solvation = -3601.928430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85270 -38.54329 -37.47302 -35.29692 -33.66065 -33.42348 -32.00500 -31.37890 -30.87391 -29.34672 -27.13777 -26.39469 -25.37448 -24.48555 -22.59349 -21.99244 -21.71945 -19.19859 -17.98490 -17.76163 -17.04784 -16.68712 -16.25315 -15.47021 -14.81457 -14.64066 -14.58846 -14.12681 -14.08279 -13.77243 -13.59263 -13.50243 -12.89656 -12.79751 -12.65425 -12.47556 -12.25407 -12.17415 -11.84374 -11.70711 -11.58239 -11.33556 -11.10448 -11.07433 -10.92492 -10.73306 -10.60059 -10.47458 -9.89319 -9.47375 -9.46878 -9.28563 -8.90371 -8.56245 -8.27961 -8.00972 -7.85746 -6.42996 -4.03448 0.60506 1.07769 2.21680 3.06493 3.10677 3.18427 3.22237 3.51038 3.77336 4.03818 4.10563 4.30987 4.34414 4.59452 4.87061 4.93853 5.00111 5.06175 5.17138 5.24217 5.36676 5.41745 5.43586 5.45706 5.56703 5.62537 5.69694 5.91119 5.93028 5.96450 6.05525 6.12626 6.22844 6.24808 6.29199 6.33852 6.40662 6.52747 6.63207 6.71449 6.79717 6.85334 7.00527 7.09109 7.42217 7.88444 8.18884 8.27807 8.79387 8.95798 9.17531 9.71787 10.55305 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.005589 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.577294 B = 5008.310388 C = 6305.254047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.102 4.102 3 C 0.232 3.768 4 N -0.421 5.421 5 C -0.316 4.316 6 H 0.105 0.895 7 C 0.035 3.965 8 N -0.862 5.862 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.487 3.513 14 O -0.571 6.571 15 C -0.029 4.029 16 C -0.102 4.102 17 C -0.117 4.117 18 C 0.168 3.832 19 C -0.075 4.075 20 C -0.145 4.145 21 N -0.479 5.479 22 C 0.127 3.873 23 C -0.099 4.099 24 C -0.104 4.104 25 C -0.126 4.126 26 C -0.082 4.082 27 C -0.084 4.084 28 H 0.198 0.802 29 H 0.116 0.884 30 H 0.055 0.945 31 H 0.271 0.729 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 11.195 -2.430 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.104 4.104 3 C 0.109 3.891 4 N -0.138 5.138 5 C -0.444 4.444 6 H 0.123 0.877 7 C -0.170 4.170 8 N -0.500 5.500 9 Si 0.755 3.245 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.275 3.725 14 O -0.455 6.455 15 C -0.040 4.040 16 C -0.105 4.105 17 C -0.174 4.174 18 C 0.015 3.985 19 C -0.113 4.113 20 C -0.203 4.203 21 N -0.187 5.187 22 C 0.006 3.994 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.100 4.100 27 C -0.086 4.086 28 H 0.215 0.785 29 H 0.134 0.866 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.129 11.648 -2.827 12.039 hybrid contribution 0.244 -1.705 0.693 1.856 sum -0.885 9.943 -2.134 10.208 Atomic orbital electron populations 1.24133 0.95193 1.05427 1.03278 1.22910 0.94065 0.95804 0.97604 1.18301 0.84770 0.91480 0.94590 1.43546 1.54693 1.11001 1.04554 1.19686 1.27642 0.88144 1.08913 0.87685 1.25411 0.94922 0.99568 0.97139 1.69921 1.22461 1.39432 1.18147 0.85898 0.78460 0.81204 0.78924 1.20129 1.20884 1.19335 1.17677 0.85638 0.85871 0.83313 1.90675 1.51204 1.57674 1.45927 1.20666 0.92798 0.94655 0.95919 1.20751 0.94456 0.95506 0.99758 1.20963 0.96041 0.97369 1.03064 1.21165 0.95405 0.88204 0.93708 1.20540 0.89425 1.02565 0.98802 1.21717 0.98990 1.02328 0.97290 1.67586 1.00878 1.35681 1.14597 1.18729 0.91163 0.91388 0.98159 1.20700 0.92128 0.98233 1.00688 1.20821 0.95947 0.96733 0.98905 1.20869 0.99804 0.92625 1.01075 1.21079 0.91825 1.00132 0.97002 1.18780 0.94809 0.93243 1.01818 0.78480 0.86628 0.92748 0.91774 0.91207 0.90977 0.89564 0.90103 0.89895 0.91919 0.92353 0.92111 0.85108 0.85659 0.85680 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 17.94 29.55 0.53 -4.61 16 2 C -0.10 -2.22 9.36 -37.12 -0.35 -2.57 16 3 C 0.23 5.18 4.91 -6.83 -0.03 5.15 16 4 N -0.42 -10.35 2.59 -119.08 -0.31 -10.66 16 5 C -0.32 -8.32 9.32 -15.05 -0.14 -8.46 16 6 H 0.11 2.90 7.37 -52.48 -0.39 2.51 16 7 C 0.03 0.86 5.08 -17.44 -0.09 0.77 16 8 N -0.86 -21.48 9.02 55.51 0.50 -20.98 16 9 Si 0.93 19.75 29.57 -169.99 -5.03 14.73 16 10 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.49 11.89 4.37 -12.41 -0.05 11.84 16 14 O -0.57 -15.87 16.78 5.27 0.09 -15.78 16 15 C -0.03 -0.61 3.93 -104.34 -0.41 -1.02 16 16 C -0.10 -1.93 5.57 -103.97 -0.58 -2.51 16 17 C -0.12 -2.09 7.78 36.01 0.28 -1.81 16 18 C 0.17 2.82 6.03 -82.58 -0.50 2.32 16 19 C -0.08 -0.97 5.51 -27.88 -0.15 -1.12 16 20 C -0.15 -1.69 9.74 37.16 0.36 -1.33 16 21 N -0.48 -8.39 10.19 -7.27 -0.07 -8.46 16 22 C 0.13 2.26 6.61 -84.87 -0.56 1.70 16 23 C -0.10 -1.43 9.99 -39.43 -0.39 -1.82 16 24 C -0.10 -1.33 9.94 -39.95 -0.40 -1.72 16 25 C -0.13 -1.77 9.96 -39.88 -0.40 -2.17 16 26 C -0.08 -1.45 9.42 -39.61 -0.37 -1.82 16 27 C -0.08 -1.62 5.39 -106.51 -0.57 -2.20 16 28 H 0.20 3.15 7.80 -54.10 -0.42 2.73 16 29 H 0.12 2.70 6.42 -51.93 -0.33 2.37 16 30 H 0.05 1.14 6.80 -51.93 -0.35 0.79 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.06 5.80 -51.93 -0.30 0.76 16 34 H 0.09 1.83 5.17 -51.93 -0.27 1.56 16 35 H 0.08 0.95 8.14 -51.94 -0.42 0.53 16 36 H 0.08 0.96 6.64 -51.93 -0.34 0.61 16 37 H 0.06 0.79 7.38 -51.93 -0.38 0.40 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.13 2.48 7.23 -52.48 -0.38 2.10 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -30.34 355.96 -8.55 -38.89 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.27 Total: 8.29 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.83 Total: -11.39 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.12 Total: -40.10 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.09 Total: -15.78 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.34 -8.55 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281564038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.087 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds