Wall clock time and date at job start Tue Mar 31 2020 12:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47134 * 50.04567 * 3 2 1 5 5 C 1.36652 * 119.99895 * 264.76938 * 4 3 2 6 6 H 1.08003 * 119.99903 * 200.81352 * 5 4 3 7 7 C 1.39189 * 119.99715 * 20.81747 * 5 4 3 8 8 N 1.31269 * 120.00610 * 11.96435 * 7 5 4 9 9 Si 1.86800 * 119.99696 * 191.96208 * 7 5 4 10 10 H 1.48505 * 109.47295 * 84.98440 * 9 7 5 11 11 H 1.48509 * 109.47258 * 204.98298 * 9 7 5 12 12 H 1.48500 * 109.47439 * 324.98325 * 9 7 5 13 13 C 1.34777 * 119.99811 * 84.77425 * 4 3 2 14 14 O 1.21613 * 120.00015 * 180.02562 * 13 4 3 15 15 C 1.47677 * 120.00411 * 359.97438 * 13 4 3 16 16 C 1.39060 * 121.12543 * 270.00608 * 15 13 4 17 17 C 1.50706 * 120.21338 * 0.02562 * 16 15 13 18 18 C 1.39159 * 119.57119 * 179.71933 * 16 15 13 19 19 C 1.50703 * 119.05416 * 180.25068 * 18 16 15 20 20 C 1.53002 * 109.46743 * 90.00063 * 19 18 16 21 21 N 1.31050 * 121.89855 * 0.28126 * 18 16 15 22 22 C 1.33563 * 121.84916 * 359.96641 * 21 18 16 23 23 C 1.40702 * 120.95885 * 180.02562 * 22 21 18 24 24 C 1.36083 * 119.73969 * 179.97438 * 23 22 21 25 25 C 1.39323 * 121.04581 * 0.03577 * 24 23 22 26 26 C 1.36279 * 120.83133 * 359.96360 * 25 24 23 27 27 C 1.40047 * 119.64850 * 0.02562 * 26 25 24 28 28 H 4.40641 * 5.51471 * 179.97438 * 4 1 2 29 29 H 1.08996 * 109.47646 * 290.04350 * 3 2 1 30 30 H 1.09002 * 109.46692 * 170.04119 * 3 2 1 31 31 H 0.96995 * 119.99958 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46580 * 269.72189 * 17 16 15 33 33 H 1.08997 * 109.47015 * 149.72408 * 17 16 15 34 34 H 1.09003 * 109.47164 * 29.72045 * 17 16 15 35 35 H 1.08989 * 109.47451 * 210.00427 * 19 18 16 36 36 H 1.09001 * 109.46935 * 330.00451 * 19 18 16 37 37 H 1.08994 * 109.47478 * 299.99908 * 20 19 18 38 38 H 1.08995 * 109.46659 * 60.00571 * 20 19 18 39 39 H 1.09007 * 109.46862 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.13119 * 359.96050 * 23 22 21 41 41 H 1.07999 * 119.47717 * 180.02562 * 24 23 22 42 42 H 1.07997 * 119.58422 * 179.97438 * 25 24 23 43 43 H 1.08007 * 120.17543 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8861 -1.0588 5 6 3.4648 -2.1800 -0.7682 6 1 4.1221 -2.7302 -1.4252 7 6 2.9538 -2.7886 0.3745 8 7 1.9807 -2.2159 1.0440 9 14 3.6526 -4.4208 0.9552 10 1 4.8524 -4.1748 1.7951 11 1 2.6288 -5.1417 1.7536 12 1 4.0323 -5.2434 -0.2213 13 6 3.2589 -0.4258 -2.3194 14 8 3.6642 -1.1620 -3.1985 15 6 2.9018 0.9723 -2.6336 16 6 1.6106 1.3150 -3.0198 17 6 0.5440 0.2555 -3.1247 18 6 1.3082 2.6435 -3.3027 19 6 -0.0962 3.0027 -3.7147 20 6 -0.9221 3.3388 -2.4714 21 7 2.2096 3.5913 -3.2217 22 6 3.4704 3.3360 -2.8622 23 6 4.4230 4.3683 -2.7809 24 6 5.7007 4.0802 -2.4115 25 6 6.0850 2.7751 -2.1115 26 6 5.1894 1.7501 -2.1796 27 6 3.8659 2.0105 -2.5561 28 1 -1.0499 -0.0003 -0.0001 29 1 3.0096 -0.3514 0.9654 30 1 3.0088 1.0130 -0.1777 31 1 1.6249 -2.6400 1.8405 32 1 0.5362 -0.1534 -4.1351 33 1 -0.4283 0.6956 -2.9033 34 1 0.7527 -0.5421 -2.4116 35 1 -0.0704 3.8669 -4.3783 36 1 -0.5494 2.1587 -4.2347 37 1 -0.9480 2.4746 -1.8078 38 1 -0.4690 4.1828 -1.9515 39 1 -1.9381 3.5982 -2.7694 40 1 4.1414 5.3852 -3.0109 41 1 6.4283 4.8759 -2.3500 42 1 7.1054 2.5731 -1.8213 43 1 5.4989 0.7423 -1.9452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281564038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:19 Heat of formation + Delta-G solvation = 65.952737 kcal Electronic energy + Delta-G solvation = -27759.113013 eV Core-core repulsion = 24156.480176 eV Total energy + Delta-G solvation = -3602.632838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.24031 -40.30489 -38.69707 -37.21399 -35.09031 -34.61884 -33.77877 -33.14051 -32.15131 -30.53820 -28.72010 -28.03492 -27.05414 -25.79210 -24.10746 -23.29357 -22.86528 -20.82916 -19.77482 -19.09078 -18.65088 -18.09701 -17.96780 -17.08786 -16.32144 -16.11706 -15.91633 -15.68000 -15.65480 -15.09635 -14.82557 -14.71395 -14.49142 -14.30954 -14.15266 -14.07569 -13.77541 -13.52254 -13.43265 -13.17191 -12.83803 -12.72155 -12.61810 -12.51872 -12.22609 -12.20629 -11.95957 -11.83151 -11.36290 -11.29153 -11.09882 -10.91852 -10.61003 -10.28451 -9.93867 -9.54185 -9.17736 -8.36236 -6.05896 -0.72540 -0.20605 0.87332 1.31505 1.40040 1.50507 1.72228 1.87740 2.06047 2.29669 2.41859 2.92648 2.99175 3.04257 3.16866 3.58762 3.68702 3.69417 3.80188 3.88870 4.04456 4.14013 4.29570 4.35511 4.42720 4.45420 4.47083 4.51429 4.61188 4.67060 4.81441 4.87434 4.96695 5.01936 5.04477 5.09886 5.19270 5.22409 5.37253 5.38806 5.39921 5.42742 5.49992 5.58615 5.89853 5.93827 6.33030 6.85368 6.99957 7.15450 7.24881 7.80848 8.59734 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.005589 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.577294 B = 5008.310388 C = 6305.254047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.148 4.148 3 C 0.243 3.757 4 N -0.425 5.425 5 C -0.354 4.354 6 H 0.078 0.922 7 C 0.008 3.992 8 N -0.867 5.867 9 Si 0.991 3.009 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.278 1.278 13 C 0.489 3.511 14 O -0.624 6.624 15 C -0.062 4.062 16 C -0.106 4.106 17 C -0.111 4.111 18 C 0.162 3.838 19 C -0.073 4.073 20 C -0.140 4.140 21 N -0.476 5.476 22 C 0.108 3.892 23 C -0.097 4.097 24 C -0.090 4.090 25 C -0.103 4.103 26 C -0.122 4.122 27 C -0.102 4.102 28 H 0.236 0.764 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.276 0.724 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.159 0.841 41 H 0.175 0.825 42 H 0.156 0.844 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 13.819 -1.966 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.149 4.149 3 C 0.120 3.880 4 N -0.140 5.140 5 C -0.482 4.482 6 H 0.095 0.905 7 C -0.196 4.196 8 N -0.503 5.503 9 Si 0.814 3.186 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.203 1.203 13 C 0.278 3.722 14 O -0.512 6.512 15 C -0.073 4.073 16 C -0.109 4.109 17 C -0.167 4.167 18 C 0.009 3.991 19 C -0.111 4.111 20 C -0.198 4.198 21 N -0.185 5.185 22 C -0.014 4.014 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.121 4.121 26 C -0.141 4.141 27 C -0.104 4.104 28 H 0.252 0.748 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.177 0.823 41 H 0.193 0.807 42 H 0.174 0.826 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.020 14.303 -2.326 14.631 hybrid contribution 0.554 -2.436 0.560 2.560 sum -1.466 11.867 -1.766 12.087 Atomic orbital electron populations 1.24961 0.95969 1.03106 1.00985 1.22940 0.94362 0.97904 0.99695 1.18105 0.85855 0.91085 0.92926 1.43634 1.54335 1.10759 1.05269 1.19605 1.29180 0.89415 1.09977 0.90456 1.26089 0.94806 1.02393 0.96336 1.70022 1.22203 1.40209 1.17891 0.84991 0.78316 0.77195 0.78083 1.18927 1.19714 1.20316 1.18132 0.84283 0.87148 0.82593 1.90598 1.53567 1.59688 1.47348 1.20465 0.94727 0.93082 0.99070 1.20980 0.93708 0.96872 0.99309 1.20917 0.97444 0.96260 1.02119 1.21705 0.97164 0.87040 0.93154 1.20684 0.86980 1.03734 0.99677 1.21698 1.00298 1.01476 0.96351 1.67694 1.00915 1.35575 1.14272 1.19177 0.92110 0.91411 0.98683 1.21110 0.92065 0.98594 0.99805 1.21325 0.96233 0.96984 0.96371 1.21297 1.00358 0.92399 0.98012 1.20993 0.92578 1.00050 1.00450 1.18943 0.95045 0.93751 1.02707 0.74764 0.88319 0.92231 0.91365 0.90938 0.87646 0.93290 0.88631 0.88512 0.93013 0.93190 0.89137 0.82312 0.80734 0.82599 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.90 17.94 74.32 1.33 -7.56 16 2 C -0.15 -6.55 9.36 31.13 0.29 -6.26 16 3 C 0.24 11.48 4.91 84.57 0.42 11.90 16 4 N -0.42 -22.43 2.59 -648.92 -1.68 -24.11 16 5 C -0.35 -19.96 9.32 84.17 0.78 -19.18 16 6 H 0.08 4.67 7.37 -2.91 -0.02 4.65 16 7 C 0.01 0.42 5.08 85.01 0.43 0.86 16 8 N -0.87 -43.97 9.02 21.70 0.20 -43.77 16 9 Si 0.99 41.47 29.57 68.60 2.03 43.50 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.49 25.86 4.37 86.74 0.38 26.23 16 14 O -0.62 -37.95 16.78 -4.07 -0.07 -38.02 16 15 C -0.06 -2.79 3.93 -19.68 -0.08 -2.87 16 16 C -0.11 -4.10 5.57 -19.44 -0.11 -4.21 16 17 C -0.11 -3.99 7.78 71.24 0.55 -3.44 16 18 C 0.16 5.33 6.03 42.90 0.26 5.59 16 19 C -0.07 -1.69 5.51 29.85 0.16 -1.53 16 20 C -0.14 -2.87 9.74 71.98 0.70 -2.17 16 21 N -0.48 -16.12 10.19 -176.91 -1.80 -17.93 16 22 C 0.11 3.74 6.61 40.33 0.27 4.01 16 23 C -0.10 -2.54 9.99 22.37 0.22 -2.31 16 24 C -0.09 -1.95 9.94 22.03 0.22 -1.73 16 25 C -0.10 -2.74 9.96 22.07 0.22 -2.52 16 26 C -0.12 -4.52 9.42 22.25 0.21 -4.31 16 27 C -0.10 -4.10 5.39 -21.09 -0.11 -4.21 16 28 H 0.24 6.79 7.80 -4.42 -0.03 6.76 16 29 H 0.10 4.88 6.42 -2.39 -0.02 4.87 16 30 H 0.06 2.68 6.80 -2.39 -0.02 2.66 16 31 H 0.28 13.20 8.31 -92.71 -0.77 12.43 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.11 2.96 5.80 -2.39 -0.01 2.95 16 34 H 0.05 2.15 5.17 -2.39 -0.01 2.14 16 35 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.10 1.97 6.64 -2.39 -0.02 1.96 16 37 H 0.05 1.17 7.38 -2.39 -0.02 1.15 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 41 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.10 4.25 7.23 -2.91 -0.02 4.23 16 Total: -1.00 -72.16 355.96 5.86 -66.29 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 1.03 Total: 27.75 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 6.15 Total: -13.72 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -3.29 Total: -85.81 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.07 Total: -38.02 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -72.16 5.86 -66.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281564038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.246 kcal (2) G-P(sol) polarization free energy of solvation -72.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds