Wall clock time and date at job start Tue Mar 31 2020 13:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00164 * 2 1 4 4 N 1.46504 * 109.46791 * 125.00061 * 3 2 1 5 5 C 1.46493 * 120.00085 * 270.00024 * 4 3 2 6 6 C 1.50702 * 109.47323 * 270.00250 * 5 4 3 7 7 H 1.07997 * 120.00126 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99806 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00258 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99919 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46791 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47092 * 120.00032 * 10 8 6 13 13 H 1.48499 * 109.47257 * 240.00256 * 10 8 6 14 14 C 1.34777 * 119.99606 * 90.00634 * 4 3 2 15 15 O 1.21280 * 119.99786 * 179.97438 * 14 4 3 16 16 C 1.50699 * 120.00118 * 359.97438 * 14 4 3 17 17 C 1.50702 * 109.46945 * 180.02562 * 16 14 4 18 18 C 1.33636 * 122.75111 * 85.02567 * 17 16 14 19 19 S 1.76195 * 107.92420 * 179.75695 * 18 17 16 20 20 C 1.70982 * 90.28425 * 0.28306 * 19 18 17 21 21 C 1.50699 * 124.91863 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47078 * 239.69654 * 21 20 19 23 23 C 1.52992 * 109.46956 * 119.69342 * 21 20 19 24 24 C 1.53006 * 109.46866 * 359.69477 * 21 20 19 25 25 N 1.29028 * 110.16088 * 359.71148 * 20 19 18 26 26 H 1.08000 * 120.00645 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99929 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99722 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47034 * 5.00601 * 3 2 1 30 30 H 1.09000 * 109.47513 * 245.00487 * 3 2 1 31 31 H 1.09004 * 109.47552 * 30.00610 * 5 4 3 32 32 H 1.09000 * 109.46863 * 150.00268 * 5 4 3 33 33 H 0.97006 * 119.99903 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47011 * 60.00378 * 16 14 4 35 35 H 1.09002 * 109.47253 * 300.00240 * 16 14 4 36 36 H 1.08000 * 126.03728 * 359.97438 * 18 17 16 37 37 H 1.09002 * 109.47153 * 299.99793 * 22 21 20 38 38 H 1.09001 * 109.46832 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47261 * 59.99965 * 22 21 20 40 40 H 1.09001 * 109.47066 * 180.02562 * 23 21 20 41 41 H 1.08996 * 109.47747 * 299.99900 * 23 21 20 42 42 H 1.09002 * 109.47103 * 60.00312 * 23 21 20 43 43 H 1.08993 * 109.46955 * 300.00219 * 24 21 20 44 44 H 1.09000 * 109.47050 * 60.00048 * 24 21 20 45 45 H 1.09001 * 109.47002 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1315 5 6 2.5589 1.8647 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3034 3.8369 1.6367 8 6 2.5195 4.0662 3.6088 9 7 1.9610 3.4652 4.6366 10 14 2.8739 5.8990 3.6781 11 1 3.5016 6.3303 2.4032 12 1 1.6038 6.6415 3.8800 13 1 3.7976 6.1823 4.8058 14 6 4.2497 0.8660 0.9823 15 8 5.0200 0.8885 1.9188 16 6 4.6969 0.3174 -0.3481 17 6 6.1312 -0.1343 -0.2487 18 6 6.4786 -1.3448 0.1984 19 16 8.2360 -1.4592 0.1439 20 6 8.3293 0.1351 -0.4669 21 6 9.6086 0.8537 -0.8105 22 6 9.7229 2.1239 0.0347 23 6 9.6009 1.2272 -2.2941 24 6 10.8007 -0.0606 -0.5209 25 7 7.1455 0.6318 -0.5961 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4027 -0.9314 31 1 1.4888 1.6964 2.5460 32 1 3.0991 1.3600 3.2259 33 1 1.7328 3.9737 5.4305 34 1 4.6120 1.0938 -1.1084 35 1 4.0677 -0.5296 -0.6219 36 1 5.8016 -2.1178 0.5308 37 1 8.8736 2.7753 -0.1716 38 1 10.6484 2.6434 -0.2136 39 1 9.7283 1.8577 1.0917 40 1 10.5264 1.7466 -2.5428 41 1 9.5195 0.3223 -2.8963 42 1 8.7517 1.8786 -2.5004 43 1 10.8061 -0.3268 0.5360 44 1 10.7193 -0.9656 -1.1230 45 1 11.7260 0.4589 -0.7699 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292538086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:48 Heat of formation + Delta-G solvation = 16.300604 kcal Electronic energy + Delta-G solvation = -24990.535675 eV Core-core repulsion = 21521.193711 eV Total energy + Delta-G solvation = -3469.341964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.15412 -38.79582 -36.82534 -35.58854 -33.21087 -32.08482 -31.42660 -28.48974 -27.59532 -27.34671 -27.02855 -25.42308 -24.82587 -22.74913 -20.36053 -19.84192 -19.22751 -18.38839 -17.36259 -16.49137 -16.31767 -15.82267 -15.43065 -14.80014 -14.68874 -14.38030 -14.23600 -14.17302 -13.72186 -13.48702 -13.11009 -13.00920 -12.52789 -12.49608 -12.31986 -12.20692 -11.81345 -11.79916 -11.65108 -11.53247 -11.25182 -11.15517 -11.13903 -11.05090 -10.96679 -10.84849 -10.58340 -10.16089 -9.59549 -9.44678 -9.21200 -9.18806 -9.00202 -8.49374 -8.40945 -7.66394 -6.01800 -4.06053 0.87913 1.49921 1.86845 2.44660 2.93269 3.31485 3.38687 3.41937 3.47328 3.92297 4.14710 4.47966 4.61719 4.75092 4.83858 5.07780 5.13779 5.27607 5.31348 5.34933 5.36515 5.40850 5.41501 5.47509 5.59160 5.59496 5.68781 5.70359 5.78296 5.81345 5.92038 5.94643 6.01836 6.13173 6.20531 6.24875 6.35181 6.78583 6.91336 7.10812 7.47214 7.57839 7.93980 7.95165 8.26533 8.42393 8.93477 9.11820 9.59005 11.06346 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.003793 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.552252 B = 7379.404292 C = 8904.220272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.168 4.168 3 C 0.135 3.865 4 N -0.594 5.594 5 C 0.248 3.752 6 C -0.524 4.524 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.511 3.489 15 O -0.532 6.532 16 C -0.071 4.071 17 C 0.100 3.900 18 C -0.250 4.250 19 S 0.105 5.895 20 C 0.062 3.938 21 C 0.012 3.988 22 C -0.136 4.136 23 C -0.133 4.133 24 C -0.152 4.152 25 N -0.457 5.457 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.173 0.827 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.822 -10.391 -15.028 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.011 3.989 4 N -0.325 5.325 5 C 0.129 3.871 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.297 3.703 15 O -0.408 6.408 16 C -0.114 4.114 17 C -0.032 4.032 18 C -0.388 4.388 19 S 0.361 5.639 20 C -0.217 4.217 21 C 0.008 3.992 22 C -0.194 4.194 23 C -0.191 4.191 24 C -0.210 4.210 25 N -0.170 5.170 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.190 0.810 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.821 -10.592 -14.256 21.334 hybrid contribution -1.018 1.201 0.238 1.592 sum 10.803 -9.392 -14.018 20.035 Atomic orbital electron populations 1.23817 0.95852 1.01762 1.00573 1.23427 0.96413 0.99009 0.99918 1.20604 0.93191 0.95338 0.89794 1.48194 1.10317 1.60408 1.13607 1.19261 0.95304 0.93762 0.78727 1.21488 1.40234 0.93355 1.01246 0.92390 1.24925 0.95090 0.98723 0.95340 1.69947 1.42312 1.36031 1.05137 0.86464 0.77890 0.85060 0.78164 1.19763 1.20969 1.20901 1.20047 0.82359 0.78880 0.89059 1.90687 1.52366 1.55938 1.41821 1.20330 0.89953 1.02547 0.98544 1.19520 0.94923 0.89455 0.99268 1.26694 0.97643 1.03245 1.11259 1.83668 1.03030 1.15962 1.61275 1.26944 0.96932 0.95401 1.02404 1.19204 0.87658 0.95096 0.97245 1.21849 1.02532 0.95625 0.99428 1.21826 1.02675 1.01762 0.92872 1.22014 0.97326 0.99268 1.02437 1.65877 0.97751 1.34664 1.18749 0.88809 0.88263 0.87838 0.89393 0.90701 0.94970 0.93993 0.92833 0.87685 0.88044 0.80990 0.91211 0.91833 0.92318 0.91793 0.92656 0.91365 0.91783 0.91955 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 14.32 29.01 0.42 -1.91 16 2 C -0.17 -2.35 9.74 -36.03 -0.35 -2.70 16 3 C 0.13 2.19 5.65 -5.19 -0.03 2.16 16 4 N -0.59 -12.70 2.44 -176.43 -0.43 -13.13 16 5 C 0.25 6.61 5.16 -5.20 -0.03 6.58 16 6 C -0.52 -15.16 9.39 -34.44 -0.32 -15.48 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 10 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.51 10.92 7.66 -10.99 -0.08 10.83 16 15 O -0.53 -13.92 15.61 5.56 0.09 -13.83 16 16 C -0.07 -1.13 4.67 -29.03 -0.14 -1.26 16 17 C 0.10 1.66 5.23 -84.23 -0.44 1.22 16 18 C -0.25 -3.67 11.14 29.12 0.32 -3.34 16 19 S 0.10 1.32 21.57 -107.50 -2.32 -1.00 16 20 C 0.06 0.88 5.78 -13.46 -0.08 0.80 16 21 C 0.01 0.13 0.99 -155.66 -0.15 -0.02 16 22 C -0.14 -1.60 8.45 37.16 0.31 -1.28 16 23 C -0.13 -1.28 8.45 37.15 0.31 -0.96 16 24 C -0.15 -1.29 7.54 37.16 0.28 -1.01 16 25 N -0.46 -7.69 10.51 -8.06 -0.08 -7.78 16 26 H 0.09 1.03 8.06 -52.49 -0.42 0.60 16 27 H 0.10 1.26 7.84 -52.48 -0.41 0.85 16 28 H 0.10 1.32 7.83 -52.49 -0.41 0.91 16 29 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 30 H 0.07 1.01 6.44 -51.93 -0.33 0.68 16 31 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.10 1.55 7.40 -51.93 -0.38 1.16 16 35 H 0.10 1.27 7.77 -51.93 -0.40 0.86 16 36 H 0.17 2.18 8.06 -52.49 -0.42 1.75 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.57 7.93 -51.93 -0.41 0.15 16 44 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -35.00 389.48 -8.56 -43.56 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.32 Total: 0.01 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.07 Total: -4.72 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.22 Total: -47.18 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.32 Total: -1.00 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.00 -8.56 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292538086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.863 kcal (2) G-P(sol) polarization free energy of solvation -35.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds