Wall clock time and date at job start Tue Mar 31 2020 13:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00164 * 2 1 4 4 N 1.46504 * 109.46791 * 125.00061 * 3 2 1 5 5 C 1.46493 * 120.00085 * 270.00024 * 4 3 2 6 6 C 1.50702 * 109.47323 * 270.00250 * 5 4 3 7 7 H 1.07997 * 120.00126 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99806 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00258 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99919 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46791 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47092 * 120.00032 * 10 8 6 13 13 H 1.48499 * 109.47257 * 240.00256 * 10 8 6 14 14 C 1.34777 * 119.99606 * 90.00634 * 4 3 2 15 15 O 1.21280 * 119.99786 * 179.97438 * 14 4 3 16 16 C 1.50699 * 120.00118 * 359.97438 * 14 4 3 17 17 C 1.50702 * 109.46945 * 180.02562 * 16 14 4 18 18 C 1.33636 * 122.75111 * 85.02567 * 17 16 14 19 19 S 1.76195 * 107.92420 * 179.75695 * 18 17 16 20 20 C 1.70982 * 90.28425 * 0.28306 * 19 18 17 21 21 C 1.50699 * 124.91863 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47078 * 239.69654 * 21 20 19 23 23 C 1.52992 * 109.46956 * 119.69342 * 21 20 19 24 24 C 1.53006 * 109.46866 * 359.69477 * 21 20 19 25 25 N 1.29028 * 110.16088 * 359.71148 * 20 19 18 26 26 H 1.08000 * 120.00645 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99929 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99722 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47034 * 5.00601 * 3 2 1 30 30 H 1.09000 * 109.47513 * 245.00487 * 3 2 1 31 31 H 1.09004 * 109.47552 * 30.00610 * 5 4 3 32 32 H 1.09000 * 109.46863 * 150.00268 * 5 4 3 33 33 H 0.97006 * 119.99903 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47011 * 60.00378 * 16 14 4 35 35 H 1.09002 * 109.47253 * 300.00240 * 16 14 4 36 36 H 1.08000 * 126.03728 * 359.97438 * 18 17 16 37 37 H 1.09002 * 109.47153 * 299.99793 * 22 21 20 38 38 H 1.09001 * 109.46832 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47261 * 59.99965 * 22 21 20 40 40 H 1.09001 * 109.47066 * 180.02562 * 23 21 20 41 41 H 1.08996 * 109.47747 * 299.99900 * 23 21 20 42 42 H 1.09002 * 109.47103 * 60.00312 * 23 21 20 43 43 H 1.08993 * 109.46955 * 300.00219 * 24 21 20 44 44 H 1.09000 * 109.47050 * 60.00048 * 24 21 20 45 45 H 1.09001 * 109.47002 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1315 5 6 2.5589 1.8647 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3034 3.8369 1.6367 8 6 2.5195 4.0662 3.6088 9 7 1.9610 3.4652 4.6366 10 14 2.8739 5.8990 3.6781 11 1 3.5016 6.3303 2.4032 12 1 1.6038 6.6415 3.8800 13 1 3.7976 6.1823 4.8058 14 6 4.2497 0.8660 0.9823 15 8 5.0200 0.8885 1.9188 16 6 4.6969 0.3174 -0.3481 17 6 6.1312 -0.1343 -0.2487 18 6 6.4786 -1.3448 0.1984 19 16 8.2360 -1.4592 0.1439 20 6 8.3293 0.1351 -0.4669 21 6 9.6086 0.8537 -0.8105 22 6 9.7229 2.1239 0.0347 23 6 9.6009 1.2272 -2.2941 24 6 10.8007 -0.0606 -0.5209 25 7 7.1455 0.6318 -0.5961 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4027 -0.9314 31 1 1.4888 1.6964 2.5460 32 1 3.0991 1.3600 3.2259 33 1 1.7328 3.9737 5.4305 34 1 4.6120 1.0938 -1.1084 35 1 4.0677 -0.5296 -0.6219 36 1 5.8016 -2.1178 0.5308 37 1 8.8736 2.7753 -0.1716 38 1 10.6484 2.6434 -0.2136 39 1 9.7283 1.8577 1.0917 40 1 10.5264 1.7466 -2.5428 41 1 9.5195 0.3223 -2.8963 42 1 8.7517 1.8786 -2.5004 43 1 10.8061 -0.3268 0.5360 44 1 10.7193 -0.9656 -1.1230 45 1 11.7260 0.4589 -0.7699 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292538086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:47 Heat of formation + Delta-G solvation = -5.182894 kcal Electronic energy + Delta-G solvation = -24991.467269 eV Core-core repulsion = 21521.193711 eV Total energy + Delta-G solvation = -3470.273559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40449 -40.29873 -37.76737 -37.15500 -35.16569 -33.66943 -32.75934 -30.07627 -28.61987 -28.32684 -28.18956 -26.88322 -26.03106 -24.67408 -21.59267 -20.94703 -20.25880 -19.88323 -18.69160 -18.44101 -17.90394 -17.30583 -16.69403 -16.21541 -16.16935 -15.82628 -15.48490 -15.09779 -14.84643 -14.66623 -14.49784 -14.26852 -14.09051 -13.98897 -13.45589 -13.26653 -13.09677 -13.00848 -12.97728 -12.81212 -12.63052 -12.62823 -12.43312 -12.29505 -12.18793 -12.16960 -11.97704 -11.89263 -11.67201 -10.72125 -10.67401 -10.53167 -10.30546 -10.28020 -9.63711 -9.48222 -8.24919 -6.39371 -0.21121 0.46653 0.78128 1.32279 1.34002 1.35449 1.47446 1.72345 1.82180 2.33861 2.57405 3.02267 3.04616 3.66335 3.77850 3.93390 3.95603 4.07982 4.11453 4.22448 4.26394 4.37877 4.44369 4.48016 4.66493 4.73109 4.79437 4.82529 4.85851 4.94106 4.96316 4.96442 5.01858 5.06815 5.12204 5.20820 5.26767 5.34519 5.41537 5.50605 5.71932 5.75759 5.96472 6.04742 6.67098 6.75273 6.84620 7.25917 7.45462 8.82391 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.003793 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.552252 B = 7379.404292 C = 8904.220272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.183 4.183 3 C 0.131 3.869 4 N -0.598 5.598 5 C 0.267 3.733 6 C -0.543 4.543 7 H 0.050 0.950 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.266 1.266 13 H -0.282 1.282 14 C 0.504 3.496 15 O -0.591 6.591 16 C -0.055 4.055 17 C 0.071 3.929 18 C -0.264 4.264 19 S 0.156 5.844 20 C 0.048 3.952 21 C 0.008 3.992 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.149 4.149 25 N -0.493 5.493 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.023 0.977 32 H -0.005 1.005 33 H 0.267 0.733 34 H 0.117 0.883 35 H 0.140 0.860 36 H 0.188 0.812 37 H 0.039 0.961 38 H 0.092 0.908 39 H 0.042 0.958 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.759 -10.879 -16.972 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.202 4.202 3 C 0.009 3.991 4 N -0.328 5.328 5 C 0.146 3.854 6 C -0.581 4.581 7 H 0.068 0.932 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.789 3.211 11 H -0.194 1.194 12 H -0.190 1.190 13 H -0.207 1.207 14 C 0.293 3.707 15 O -0.472 6.472 16 C -0.097 4.097 17 C -0.061 4.061 18 C -0.403 4.403 19 S 0.413 5.587 20 C -0.230 4.230 21 C 0.004 3.996 22 C -0.192 4.192 23 C -0.186 4.186 24 C -0.207 4.207 25 N -0.207 5.207 26 H 0.136 0.864 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.205 0.795 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.732 -11.099 -16.250 23.438 hybrid contribution -1.310 1.306 0.871 2.045 sum 11.422 -9.793 -15.379 21.514 Atomic orbital electron populations 1.24050 0.95585 1.02845 0.98324 1.23331 0.96776 0.98234 1.01852 1.20865 0.92705 0.96562 0.88991 1.48180 1.11570 1.59874 1.13173 1.18662 0.93808 0.92547 0.80426 1.21734 1.40469 0.94581 1.01349 0.93194 1.25824 0.94636 1.03663 0.94828 1.70057 1.42906 1.37995 1.05723 0.85408 0.78345 0.79229 0.78088 1.19373 1.19047 1.20742 1.21009 0.81443 0.77776 0.90502 1.90645 1.53904 1.58317 1.44303 1.20265 0.90632 1.03983 0.94805 1.19681 0.95168 0.90326 1.00883 1.27054 0.99617 1.03234 1.10381 1.83383 1.01023 1.14369 1.59909 1.27598 0.97315 0.96473 1.01648 1.19426 0.87350 0.94929 0.97935 1.21834 1.02728 0.95975 0.98695 1.21791 1.03031 1.01936 0.91833 1.22024 0.97005 0.99370 1.02318 1.65893 0.98739 1.35748 1.20361 0.86424 0.88512 0.86283 0.90570 0.87597 0.95916 0.98727 0.92390 0.86463 0.84251 0.79453 0.94130 0.88898 0.93907 0.89328 0.91895 0.93479 0.92324 0.90908 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 14.32 67.78 0.97 -3.06 16 2 C -0.18 -4.81 9.74 25.65 0.25 -4.56 16 3 C 0.13 4.18 5.65 85.63 0.48 4.66 16 4 N -0.60 -26.23 2.44 -830.50 -2.03 -28.26 16 5 C 0.27 14.89 5.16 85.64 0.44 15.33 16 6 C -0.54 -32.45 9.39 25.60 0.24 -32.21 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.56 5.46 84.65 0.46 1.02 16 9 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 10 Si 0.96 46.35 29.54 68.60 2.03 48.38 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 14 C 0.50 22.11 7.66 87.66 0.67 22.78 16 15 O -0.59 -32.49 15.61 -3.03 -0.05 -32.54 16 16 C -0.05 -1.71 4.67 29.10 0.14 -1.57 16 17 C 0.07 2.34 5.23 41.52 0.22 2.56 16 18 C -0.26 -7.56 11.14 66.78 0.74 -6.82 16 19 S 0.16 3.76 21.57 -56.49 -1.22 2.54 16 20 C 0.05 1.33 5.78 88.52 0.51 1.84 16 21 C 0.01 0.16 0.99 -52.93 -0.05 0.10 16 22 C -0.13 -3.12 8.45 71.98 0.61 -2.51 16 23 C -0.13 -2.24 8.45 71.98 0.61 -1.63 16 24 C -0.15 -2.16 7.54 71.98 0.54 -1.62 16 25 N -0.49 -16.74 10.51 -179.40 -1.89 -18.62 16 26 H 0.12 2.24 8.06 -2.91 -0.02 2.22 16 27 H 0.10 2.33 7.84 -2.91 -0.02 2.31 16 28 H 0.12 2.77 7.83 -2.91 -0.02 2.75 16 29 H 0.08 2.59 7.72 -2.39 -0.02 2.57 16 30 H 0.11 2.68 6.44 -2.39 -0.02 2.67 16 31 H 0.02 1.29 8.07 -2.38 -0.02 1.27 16 32 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 33 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 34 H 0.12 3.33 7.40 -2.39 -0.02 3.32 16 35 H 0.14 3.18 7.77 -2.39 -0.02 3.16 16 36 H 0.19 4.53 8.06 -2.91 -0.02 4.51 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 0.92 7.93 -2.39 -0.02 0.90 16 44 H 0.07 0.91 7.92 -2.39 -0.02 0.89 16 45 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -80.46 389.48 4.92 -75.54 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.95 Total: 15.70 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 6.84 Total: -5.69 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -3.63 Total: -103.92 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.05 Total: -32.54 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.22 Total: 2.54 kcal Total: -80.46 4.92 -75.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292538086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.353 kcal (2) G-P(sol) polarization free energy of solvation -80.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds