Wall clock time and date at job start Tue Mar 31 2020 14:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46830 * 2 1 4 4 C 1.53005 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.55015 * 305.19883 * 4 3 2 6 6 C 1.53147 * 109.55381 * 184.99973 * 4 3 2 7 7 C 1.53024 * 109.42340 * 169.70590 * 6 4 3 8 8 C 1.52145 * 108.85623 * 51.15476 * 7 6 4 9 9 N 1.32755 * 124.09571 * 162.49747 * 8 7 6 10 10 C 1.29250 * 117.67511 * 179.97438 * 9 8 7 11 11 N 1.39000 * 124.95354 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00121 * 359.97438 * 11 10 9 13 13 O 1.21278 * 120.00022 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00206 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47387 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47121 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00128 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99886 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00234 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00005 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46864 * 90.00792 * 20 18 16 22 22 H 1.48501 * 109.47515 * 210.00420 * 20 18 16 23 23 H 1.48500 * 109.47208 * 330.01069 * 20 18 16 24 24 S 1.71525 * 109.99500 * 0.28221 * 10 9 8 25 25 C 1.34648 * 122.52320 * 342.65297 * 8 7 6 26 26 C 1.51031 * 125.26576 * 359.70463 * 25 8 7 27 27 H 1.09005 * 109.46915 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47241 * 300.00066 * 1 2 3 29 29 H 1.09004 * 109.46825 * 60.00323 * 1 2 3 30 30 H 1.09001 * 109.47591 * 239.99848 * 2 1 3 31 31 H 1.09004 * 109.46825 * 119.99676 * 2 1 3 32 32 H 1.09000 * 109.47179 * 60.00369 * 3 2 1 33 33 H 1.08994 * 109.47355 * 299.99578 * 3 2 1 34 34 H 1.08999 * 109.47719 * 49.72040 * 6 4 3 35 35 H 1.08993 * 109.47907 * 289.69492 * 6 4 3 36 36 H 1.09002 * 109.59428 * 171.00643 * 7 6 4 37 37 H 1.09003 * 109.59326 * 291.30815 * 7 6 4 38 38 H 0.96999 * 120.00092 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.46796 * 300.00223 * 14 12 11 40 40 H 1.09001 * 109.47244 * 59.99495 * 14 12 11 41 41 H 1.08999 * 109.46970 * 300.00010 * 15 14 12 42 42 H 1.09001 * 109.46624 * 60.00437 * 15 14 12 43 43 H 0.96993 * 120.00289 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.62133 * 224.34398 * 26 25 8 45 45 H 1.09003 * 109.61910 * 103.81529 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9344 0.8507 0.8402 6 6 4.0824 2.8803 0.1264 7 6 5.5906 2.8622 0.3843 8 6 6.2580 1.9829 -0.6626 9 7 7.5563 2.0095 -0.9388 10 6 7.9920 1.2068 -1.8533 11 7 9.3170 1.1093 -2.2620 12 6 10.2569 1.8897 -1.6928 13 8 9.9465 2.6773 -0.8243 14 6 11.6935 1.7837 -2.1355 15 6 12.5473 2.7713 -1.3376 16 6 13.9839 2.6648 -1.7798 17 1 14.2604 1.9632 -2.5530 18 6 14.9453 3.4638 -1.1982 19 7 14.6087 4.3186 -0.2570 20 14 16.7261 3.3324 -1.7469 21 1 16.9708 4.2790 -2.8646 22 1 17.6205 3.6674 -0.6098 23 1 17.0026 1.9463 -2.2026 24 16 6.6936 0.2867 -2.4933 25 6 5.5715 1.0951 -1.4066 26 6 4.0855 0.8424 -1.3120 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.5776 3.3748 0.9563 35 1 3.8781 3.4211 -0.7976 36 1 5.9854 3.8759 0.3158 37 1 5.7867 2.4600 1.3783 38 1 9.5652 0.4797 -2.9569 39 1 12.0531 0.7694 -1.9623 40 1 11.7647 2.0179 -3.1976 41 1 12.1875 3.7855 -1.5112 42 1 12.4762 2.5373 -0.2754 43 1 15.2850 4.8804 0.1524 44 1 3.8952 -0.2308 -1.3233 45 1 3.5796 1.3150 -2.1540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330902984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:15 Heat of formation + Delta-G solvation = -26.381601 kcal Electronic energy + Delta-G solvation = -23914.654531 eV Core-core repulsion = 20443.461727 eV Total energy + Delta-G solvation = -3471.192804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46972 -39.30577 -37.51322 -34.94349 -33.77478 -33.50127 -31.09255 -30.98670 -29.69365 -26.66102 -25.63081 -24.29175 -23.64805 -22.26905 -21.17108 -20.89537 -20.09051 -18.58790 -18.14558 -16.74123 -16.62152 -15.74769 -15.59030 -15.27173 -14.93502 -14.75172 -14.45503 -14.37335 -14.02117 -13.73303 -13.40086 -13.17695 -12.97733 -12.66586 -12.51971 -12.25113 -12.21130 -11.99999 -11.80700 -11.55398 -11.23960 -11.03618 -10.95374 -10.93658 -10.66120 -10.62541 -10.44971 -10.26291 -10.02043 -9.86612 -9.63582 -9.15958 -9.14573 -8.87877 -8.35147 -7.95772 -5.98369 -4.03470 0.80875 1.01361 1.66480 2.76971 3.07559 3.32185 3.33388 3.38525 3.40935 4.27724 4.29870 4.45499 4.48796 4.51634 4.77792 4.88772 4.93208 5.01343 5.16490 5.24637 5.31804 5.34385 5.36628 5.39036 5.45485 5.52512 5.53608 5.65360 5.70572 5.77804 5.84014 5.87042 5.95020 6.00693 6.09811 6.10493 6.13091 6.17517 6.47666 6.75232 7.28704 7.70563 7.80003 8.02144 8.03015 8.33111 8.57958 9.04354 9.60320 11.12481 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036706 B = 0.002097 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.632398 B =13348.549338 C =13975.320105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.084 4.084 5 H 0.076 0.924 6 C -0.113 4.113 7 C -0.041 4.041 8 C 0.103 3.897 9 N -0.478 5.478 10 C 0.297 3.703 11 N -0.644 5.644 12 C 0.500 3.500 13 O -0.461 6.461 14 C -0.124 4.124 15 C 0.036 3.964 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.888 5.888 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 S 0.082 5.918 25 C -0.254 4.254 26 C -0.025 4.025 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.419 0.581 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.261 0.739 44 H 0.075 0.925 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.809 -10.276 -3.280 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.151 4.151 4 C -0.104 4.104 5 H 0.095 0.905 6 C -0.151 4.151 7 C -0.081 4.081 8 C -0.029 4.029 9 N -0.199 5.199 10 C -0.074 4.074 11 N -0.297 5.297 12 C 0.286 3.714 13 O -0.328 6.328 14 C -0.164 4.164 15 C -0.002 4.002 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.526 5.526 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 S 0.335 5.665 25 C -0.376 4.376 26 C -0.064 4.064 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.256 0.744 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -27.479 -9.962 -3.051 29.388 hybrid contribution 0.975 0.079 -0.142 0.989 sum -26.504 -9.883 -3.194 28.467 Atomic orbital electron populations 1.21779 0.96003 1.01518 1.01742 1.21590 0.95709 0.97032 1.02210 1.21668 0.94180 0.96871 1.02353 1.21261 0.94995 0.96722 0.97434 0.90511 1.21635 0.94484 0.96419 1.02541 1.20370 0.93394 0.98768 0.95519 1.20812 0.86635 0.97025 0.98392 1.66121 1.14166 1.23033 1.16591 1.23622 0.91279 0.96517 0.95937 1.43813 1.02548 1.42292 1.41082 1.22112 0.88035 0.79450 0.81841 1.90793 1.81132 1.33205 1.27631 1.21940 0.87667 1.04106 1.02701 1.18941 0.92502 0.93433 0.95286 1.21175 0.92557 1.21689 1.21297 0.92488 1.25027 0.99061 0.95275 0.94993 1.69995 1.33798 1.23254 1.25599 0.86570 0.84718 0.78331 0.78194 1.20652 1.21201 1.19871 1.83764 0.99564 1.42382 1.40777 1.25611 1.00683 1.06127 1.05146 1.20120 0.87045 1.01061 0.98219 0.92900 0.92809 0.92808 0.91849 0.91976 0.91589 0.91759 0.90755 0.91426 0.89531 0.89880 0.74407 0.89665 0.89674 0.95626 0.95617 0.92881 0.90690 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.13 -0.71 5.71 -26.73 -0.15 -0.87 16 3 C -0.11 -0.66 4.67 -26.73 -0.12 -0.78 16 4 C -0.08 -0.63 2.19 -90.40 -0.20 -0.83 16 5 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 6 C -0.11 -0.94 5.18 -26.64 -0.14 -1.08 16 7 C -0.04 -0.48 6.28 -27.15 -0.17 -0.65 16 8 C 0.10 1.50 6.78 -82.75 -0.56 0.94 16 9 N -0.48 -8.76 8.61 -10.34 -0.09 -8.85 16 10 C 0.30 4.73 8.05 -87.65 -0.71 4.02 16 11 N -0.64 -9.83 5.40 -13.02 -0.07 -9.90 16 12 C 0.50 9.89 7.79 -10.99 -0.09 9.80 16 13 O -0.46 -11.36 14.62 5.56 0.08 -11.28 16 14 C -0.12 -2.45 5.64 -27.88 -0.16 -2.60 16 15 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 16 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 S 0.08 0.96 23.23 -107.50 -2.50 -1.54 16 25 C -0.25 -3.05 6.38 -35.42 -0.23 -3.28 16 26 C -0.02 -0.21 5.06 -27.58 -0.14 -0.35 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.35 6.86 -51.93 -0.36 0.00 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.42 4.50 8.82 -40.82 -0.36 4.14 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 41 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.07 0.56 7.18 -51.93 -0.37 0.19 16 45 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -35.54 377.37 -11.37 -46.91 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.38 Total: -2.16 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.82 Total: -8.81 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.58 Total: -45.37 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.54 -11.37 -46.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330902984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.533 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds