Wall clock time and date at job start Tue Mar 31 2020 14:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46830 * 2 1 4 4 C 1.53005 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.55015 * 305.19883 * 4 3 2 6 6 C 1.53147 * 109.55381 * 184.99973 * 4 3 2 7 7 C 1.53024 * 109.42340 * 169.70590 * 6 4 3 8 8 C 1.52145 * 108.85623 * 51.15476 * 7 6 4 9 9 N 1.32755 * 124.09571 * 162.49747 * 8 7 6 10 10 C 1.29250 * 117.67511 * 179.97438 * 9 8 7 11 11 N 1.39000 * 124.95354 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00121 * 359.97438 * 11 10 9 13 13 O 1.21278 * 120.00022 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00206 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47387 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47121 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00128 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99886 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00234 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00005 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46864 * 90.00792 * 20 18 16 22 22 H 1.48501 * 109.47515 * 210.00420 * 20 18 16 23 23 H 1.48500 * 109.47208 * 330.01069 * 20 18 16 24 24 S 1.71525 * 109.99500 * 0.28221 * 10 9 8 25 25 C 1.34648 * 122.52320 * 342.65297 * 8 7 6 26 26 C 1.51031 * 125.26576 * 359.70463 * 25 8 7 27 27 H 1.09005 * 109.46915 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47241 * 300.00066 * 1 2 3 29 29 H 1.09004 * 109.46825 * 60.00323 * 1 2 3 30 30 H 1.09001 * 109.47591 * 239.99848 * 2 1 3 31 31 H 1.09004 * 109.46825 * 119.99676 * 2 1 3 32 32 H 1.09000 * 109.47179 * 60.00369 * 3 2 1 33 33 H 1.08994 * 109.47355 * 299.99578 * 3 2 1 34 34 H 1.08999 * 109.47719 * 49.72040 * 6 4 3 35 35 H 1.08993 * 109.47907 * 289.69492 * 6 4 3 36 36 H 1.09002 * 109.59428 * 171.00643 * 7 6 4 37 37 H 1.09003 * 109.59326 * 291.30815 * 7 6 4 38 38 H 0.96999 * 120.00092 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.46796 * 300.00223 * 14 12 11 40 40 H 1.09001 * 109.47244 * 59.99495 * 14 12 11 41 41 H 1.08999 * 109.46970 * 300.00010 * 15 14 12 42 42 H 1.09001 * 109.46624 * 60.00437 * 15 14 12 43 43 H 0.96993 * 120.00289 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.62133 * 224.34398 * 26 25 8 45 45 H 1.09003 * 109.61910 * 103.81529 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9344 0.8507 0.8402 6 6 4.0824 2.8803 0.1264 7 6 5.5906 2.8622 0.3843 8 6 6.2580 1.9829 -0.6626 9 7 7.5563 2.0095 -0.9388 10 6 7.9920 1.2068 -1.8533 11 7 9.3170 1.1093 -2.2620 12 6 10.2569 1.8897 -1.6928 13 8 9.9465 2.6773 -0.8243 14 6 11.6935 1.7837 -2.1355 15 6 12.5473 2.7713 -1.3376 16 6 13.9839 2.6648 -1.7798 17 1 14.2604 1.9632 -2.5530 18 6 14.9453 3.4638 -1.1982 19 7 14.6087 4.3186 -0.2570 20 14 16.7261 3.3324 -1.7469 21 1 16.9708 4.2790 -2.8646 22 1 17.6205 3.6674 -0.6098 23 1 17.0026 1.9463 -2.2026 24 16 6.6936 0.2867 -2.4933 25 6 5.5715 1.0951 -1.4066 26 6 4.0855 0.8424 -1.3120 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.5776 3.3748 0.9563 35 1 3.8781 3.4211 -0.7976 36 1 5.9854 3.8759 0.3158 37 1 5.7867 2.4600 1.3783 38 1 9.5652 0.4797 -2.9569 39 1 12.0531 0.7694 -1.9623 40 1 11.7647 2.0179 -3.1976 41 1 12.1875 3.7855 -1.5112 42 1 12.4762 2.5373 -0.2754 43 1 15.2850 4.8804 0.1524 44 1 3.8952 -0.2308 -1.3233 45 1 3.5796 1.3150 -2.1540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330902984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:14 Heat of formation + Delta-G solvation = -47.943040 kcal Electronic energy + Delta-G solvation = -23915.589505 eV Core-core repulsion = 20443.461727 eV Total energy + Delta-G solvation = -3472.127778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.65741 -40.55512 -38.41398 -36.10123 -35.58077 -34.59858 -33.02928 -31.77968 -30.56972 -28.23634 -26.73260 -25.45401 -24.68399 -23.47122 -22.45471 -21.67865 -21.14559 -19.73510 -19.35359 -18.56825 -17.74677 -17.28565 -16.96403 -16.47761 -16.02498 -15.91281 -15.61281 -15.16354 -15.06993 -14.95238 -14.41353 -14.27654 -14.19628 -13.99013 -13.48829 -13.30657 -13.21293 -13.14155 -12.82953 -12.81104 -12.50623 -12.48383 -12.09094 -11.95605 -11.67730 -11.60881 -11.51292 -11.45451 -11.38337 -11.27618 -11.20188 -11.06669 -10.57908 -10.21129 -10.15260 -9.05197 -8.18970 -6.33527 -0.29239 -0.05842 0.63014 1.42161 1.44944 1.45734 1.55967 1.91717 2.00862 2.42418 3.14343 3.20352 3.68797 3.80620 3.85278 3.93171 4.15684 4.30953 4.33520 4.40891 4.44236 4.49774 4.51162 4.53079 4.58582 4.81516 4.83744 4.88127 4.95934 5.01236 5.05425 5.06308 5.13076 5.18769 5.23022 5.34216 5.36237 5.44988 5.48584 5.53948 5.58366 5.60730 5.82737 6.05179 6.14235 6.82947 6.87495 7.21140 7.37005 8.93797 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036706 B = 0.002097 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.632398 B =13348.549338 C =13975.320105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.106 4.106 4 C -0.078 4.078 5 H 0.071 0.929 6 C -0.104 4.104 7 C -0.042 4.042 8 C 0.063 3.937 9 N -0.530 5.530 10 C 0.248 3.752 11 N -0.627 5.627 12 C 0.505 3.495 13 O -0.525 6.525 14 C -0.110 4.110 15 C 0.041 3.959 16 C -0.542 4.542 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.976 3.024 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.253 1.253 24 S 0.173 5.827 25 C -0.239 4.239 26 C -0.027 4.027 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.440 0.560 39 H 0.115 0.885 40 H 0.115 0.885 41 H -0.018 1.018 42 H -0.018 1.018 43 H 0.262 0.738 44 H 0.094 0.906 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.277 -12.812 -5.618 32.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.143 4.143 4 C -0.099 4.099 5 H 0.089 0.911 6 C -0.142 4.142 7 C -0.082 4.082 8 C -0.068 4.068 9 N -0.252 5.252 10 C -0.120 4.120 11 N -0.281 5.281 12 C 0.292 3.708 13 O -0.396 6.396 14 C -0.150 4.150 15 C 0.003 3.997 16 C -0.580 4.580 17 H 0.099 0.901 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.800 3.200 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.177 1.177 24 S 0.427 5.573 25 C -0.361 4.361 26 C -0.066 4.066 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.282 0.718 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.000 1.000 42 H 0.000 1.000 43 H 0.071 0.929 44 H 0.112 0.888 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.982 -12.566 -5.450 32.055 hybrid contribution 1.254 0.815 0.580 1.604 sum -27.727 -11.752 -4.870 30.506 Atomic orbital electron populations 1.21776 0.95654 1.01712 1.01913 1.21591 0.96010 0.96719 1.02226 1.21608 0.92467 0.97290 1.02984 1.21221 0.96225 0.95669 0.96747 0.91102 1.21608 0.91840 0.97487 1.03284 1.20441 0.95672 0.97166 0.94903 1.21146 0.85996 0.99201 1.00429 1.66071 1.16529 1.24623 1.17962 1.23827 0.92123 0.98579 0.97478 1.43262 1.02219 1.41692 1.40927 1.21947 0.88739 0.79074 0.81057 1.90775 1.82155 1.36130 1.30552 1.21692 0.86902 1.03507 1.02941 1.18716 0.93981 0.93073 0.93943 1.21696 0.93041 1.21782 1.21462 0.90129 1.26171 1.04798 0.94730 0.94891 1.70189 1.35650 1.24598 1.27406 0.85286 0.77727 0.79372 0.77632 1.19726 1.21354 1.17691 1.83348 0.96066 1.39460 1.38472 1.26297 1.02581 1.03999 1.03262 1.20368 0.84407 1.02512 0.99355 0.92741 0.92793 0.92514 0.91510 0.92311 0.91091 0.91057 0.89039 0.91302 0.91644 0.90383 0.71827 0.86661 0.86654 0.99973 0.99966 0.92894 0.88814 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.13 -1.08 5.71 30.59 0.17 -0.90 16 3 C -0.11 -0.93 4.67 30.60 0.14 -0.79 16 4 C -0.08 -1.01 2.19 -10.65 -0.02 -1.03 16 5 H 0.07 1.02 8.11 -2.39 -0.02 1.00 16 6 C -0.10 -1.63 5.18 30.65 0.16 -1.47 16 7 C -0.04 -1.03 6.28 30.32 0.19 -0.84 16 8 C 0.06 1.87 6.78 42.06 0.29 2.15 16 9 N -0.53 -20.24 8.61 -186.63 -1.61 -21.85 16 10 C 0.25 7.90 8.05 179.31 1.44 9.35 16 11 N -0.63 -18.93 5.40 -313.49 -1.69 -20.63 16 12 C 0.51 20.66 7.79 87.66 0.68 21.35 16 13 O -0.52 -27.77 14.62 -3.02 -0.04 -27.81 16 14 C -0.11 -4.37 5.64 29.85 0.17 -4.20 16 15 C 0.04 2.28 4.26 29.85 0.13 2.40 16 16 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 17 H 0.08 4.09 7.74 -2.91 -0.02 4.07 16 18 C -0.01 -0.50 5.46 84.65 0.46 -0.03 16 19 N -0.94 -60.23 13.29 21.45 0.28 -59.94 16 20 Si 0.98 44.39 29.54 68.60 2.03 46.42 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 24 S 0.17 3.62 23.23 -56.49 -1.31 2.30 16 25 C -0.24 -5.35 6.38 24.97 0.16 -5.19 16 26 C -0.03 -0.37 5.06 30.04 0.15 -0.22 16 27 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.52 6.86 -2.39 -0.02 0.50 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 33 H 0.07 0.57 8.12 -2.39 -0.02 0.55 16 34 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 35 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.44 8.65 8.82 -92.71 -0.82 7.83 16 39 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 40 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 41 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 42 H -0.02 -1.16 8.10 -2.39 -0.02 -1.17 16 43 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.09 1.03 7.18 -2.38 -0.02 1.01 16 45 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 Total: -1.00 -83.76 377.37 2.89 -80.87 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.17 Total: 11.05 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 5.07 Total: -10.41 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -3.02 Total: -102.42 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.04 Total: -27.81 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.31 Total: 2.30 kcal Total: -83.76 2.89 -80.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330902984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.924 kcal (2) G-P(sol) polarization free energy of solvation -83.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds