Wall clock time and date at job start Tue Mar 31 2020 14:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.53003 * 109.47457 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.63204 * 55.25311 * 4 3 2 6 6 C 1.53155 * 109.55155 * 175.50107 * 4 3 2 7 7 C 1.53006 * 109.44713 * 190.17439 * 6 4 3 8 8 C 1.52140 * 108.75439 * 308.86203 * 7 6 4 9 9 N 1.32755 * 124.10015 * 197.46593 * 8 7 6 10 10 C 1.29246 * 117.68055 * 179.97438 * 9 8 7 11 11 N 1.39001 * 124.95908 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99576 * 359.97438 * 11 10 9 13 13 O 1.21282 * 120.00355 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99723 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.46825 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47047 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99959 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00374 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99691 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47208 * 90.00034 * 20 18 16 22 22 H 1.48493 * 109.47269 * 210.00062 * 20 18 16 23 23 H 1.48501 * 109.47228 * 330.00313 * 20 18 16 24 24 S 1.70898 * 110.08691 * 359.97438 * 10 9 8 25 25 C 1.34436 * 122.68194 * 17.46420 * 8 7 6 26 26 C 1.51035 * 125.20507 * 0.05923 * 25 8 7 27 27 H 1.08991 * 109.47317 * 60.00277 * 1 2 3 28 28 H 1.09001 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46895 * 299.99715 * 1 2 3 30 30 H 1.08998 * 109.47628 * 240.00239 * 2 1 3 31 31 H 1.08998 * 109.47617 * 120.00315 * 2 1 3 32 32 H 1.09005 * 109.47091 * 60.00322 * 3 2 1 33 33 H 1.09001 * 109.47437 * 300.00293 * 3 2 1 34 34 H 1.09000 * 109.47762 * 310.18176 * 6 4 3 35 35 H 1.08997 * 109.47662 * 70.20036 * 6 4 3 36 36 H 1.09006 * 109.62540 * 189.05438 * 7 6 4 37 37 H 1.08992 * 109.53896 * 68.61825 * 7 6 4 38 38 H 0.97004 * 120.00278 * 179.97438 * 11 10 9 39 39 H 1.08997 * 109.47466 * 300.00530 * 14 12 11 40 40 H 1.09000 * 109.46738 * 60.00121 * 14 12 11 41 41 H 1.08997 * 109.47588 * 300.00525 * 15 14 12 42 42 H 1.09000 * 109.47307 * 60.00539 * 15 14 12 43 43 H 0.96997 * 119.99873 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.61687 * 135.83499 * 26 25 8 45 45 H 1.09003 * 109.61843 * 256.19324 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9359 0.8575 -0.8444 6 6 4.0824 2.8813 -0.1139 7 6 5.5910 2.8662 -0.3689 8 6 6.2544 1.9780 0.6730 9 7 7.5518 2.0010 0.9533 10 6 7.9839 1.1914 1.8634 11 7 9.3077 1.0888 2.2748 12 6 10.2505 1.8706 1.7124 13 8 9.9439 2.6640 0.8478 14 6 11.6857 1.7598 2.1587 15 6 12.5436 2.7492 1.3676 16 6 13.9786 2.6389 1.8143 17 1 14.2515 1.9332 2.5851 18 6 14.9433 3.4387 1.2391 19 7 14.6109 4.2983 0.3009 20 14 16.7221 3.3015 1.7924 21 1 17.4218 2.2877 0.9627 22 1 17.3922 4.6173 1.6357 23 1 16.7666 2.8900 3.2185 24 16 6.6901 0.2654 2.4874 25 6 5.5696 1.0833 1.4063 26 6 4.0835 0.8320 1.3081 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.5789 3.3825 -0.9405 35 1 3.8764 3.4146 0.8142 36 1 5.9858 3.8793 -0.2905 37 1 5.7883 2.4709 -1.3653 38 1 9.5529 0.4545 2.9665 39 1 11.7542 1.9882 3.2222 40 1 12.0441 0.7458 1.9811 41 1 12.4751 2.5203 0.3042 42 1 12.1854 3.7633 1.5448 43 1 15.2894 4.8613 -0.1035 44 1 3.8929 -0.2412 1.3106 45 1 3.5772 1.2956 2.1547 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330902985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:18 Heat of formation + Delta-G solvation = -47.584542 kcal Electronic energy + Delta-G solvation = -23920.521576 eV Core-core repulsion = 20448.409344 eV Total energy + Delta-G solvation = -3472.112232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67327 -40.56468 -38.42080 -36.10522 -35.58086 -34.59933 -33.03023 -31.78118 -30.57148 -28.23857 -26.73440 -25.46445 -24.68784 -23.47665 -22.46140 -21.67708 -21.14416 -19.74795 -19.35771 -18.57201 -17.74464 -17.28512 -16.96885 -16.47818 -16.02569 -15.91616 -15.61527 -15.16345 -15.07101 -14.95379 -14.41285 -14.27735 -14.19807 -13.98967 -13.48562 -13.30657 -13.21698 -13.14008 -12.83107 -12.80855 -12.51283 -12.47906 -12.09079 -11.95692 -11.67791 -11.61024 -11.51230 -11.45342 -11.38279 -11.27646 -11.19885 -11.06675 -10.57980 -10.20501 -10.14807 -9.06338 -8.19065 -6.33590 -0.28587 -0.04824 0.62874 1.42108 1.44948 1.45946 1.55939 1.91765 2.00947 2.42390 3.14263 3.20494 3.68799 3.80627 3.85625 3.93245 4.16097 4.30992 4.33505 4.40893 4.44243 4.49682 4.51246 4.53311 4.58621 4.81607 4.83817 4.88136 4.96038 5.01173 5.05511 5.06294 5.13055 5.18844 5.23062 5.34244 5.36451 5.45062 5.48498 5.54051 5.58253 5.60798 5.82656 6.05272 6.14159 6.82956 6.87573 7.21374 7.36908 8.93720 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036773 B = 0.002098 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.239934 B =13340.586085 C =13966.903050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.106 4.106 4 C -0.078 4.078 5 H 0.071 0.929 6 C -0.105 4.105 7 C -0.042 4.042 8 C 0.064 3.936 9 N -0.531 5.531 10 C 0.244 3.756 11 N -0.627 5.627 12 C 0.505 3.495 13 O -0.525 6.525 14 C -0.110 4.110 15 C 0.041 3.959 16 C -0.542 4.542 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.976 3.024 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.253 1.253 24 S 0.179 5.821 25 C -0.241 4.241 26 C -0.027 4.027 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.440 0.560 39 H 0.115 0.885 40 H 0.115 0.885 41 H -0.018 1.018 42 H -0.018 1.018 43 H 0.262 0.738 44 H 0.093 0.907 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.337 -12.820 5.509 32.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C -0.143 4.143 4 C -0.098 4.098 5 H 0.089 0.911 6 C -0.142 4.142 7 C -0.082 4.082 8 C -0.067 4.067 9 N -0.253 5.253 10 C -0.124 4.124 11 N -0.281 5.281 12 C 0.292 3.708 13 O -0.396 6.396 14 C -0.150 4.150 15 C 0.003 3.997 16 C -0.580 4.580 17 H 0.099 0.901 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.800 3.200 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.177 1.177 24 S 0.433 5.567 25 C -0.363 4.363 26 C -0.067 4.067 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.282 0.718 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.000 1.000 42 H 0.000 1.000 43 H 0.071 0.929 44 H 0.112 0.888 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -29.036 -12.572 5.345 32.089 hybrid contribution 1.267 0.810 -0.594 1.617 sum -27.769 -11.762 4.751 30.530 Atomic orbital electron populations 1.21773 0.95657 1.01714 1.01911 1.21589 0.96007 0.96719 1.02235 1.21608 0.92469 0.97293 1.02980 1.21220 0.96227 0.95612 0.96781 0.91088 1.21609 0.91846 0.97491 1.03292 1.20439 0.95701 0.97054 0.94968 1.21093 0.85996 0.99150 1.00448 1.66061 1.16698 1.24757 1.17814 1.23728 0.92284 0.98650 0.97715 1.43265 1.02240 1.41392 1.41241 1.21947 0.88706 0.79149 0.81027 1.90776 1.82257 1.35911 1.30686 1.21691 0.86935 1.03492 1.02924 1.18715 0.93972 0.93081 0.93941 1.21698 0.93050 1.21542 1.21698 0.90132 1.26174 1.04797 0.94699 0.94932 1.70191 1.35553 1.24381 1.27715 0.85282 0.77928 0.77329 0.79458 1.19726 1.21350 1.17687 1.83216 0.95959 1.38514 1.38996 1.26260 1.02647 1.03841 1.03535 1.20369 0.84425 1.02505 0.99364 0.92805 0.92739 0.92507 0.92310 0.91496 0.91057 0.91103 0.89047 0.91307 0.91623 0.90375 0.71830 0.86668 0.86666 0.99985 0.99971 0.92895 0.88831 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.47 16 2 C -0.13 -1.07 5.70 30.59 0.17 -0.90 16 3 C -0.11 -0.93 4.67 30.59 0.14 -0.79 16 4 C -0.08 -1.00 2.20 -10.65 -0.02 -1.03 16 5 H 0.07 1.03 8.11 -2.39 -0.02 1.01 16 6 C -0.10 -1.63 5.18 30.65 0.16 -1.48 16 7 C -0.04 -1.03 6.29 30.31 0.19 -0.84 16 8 C 0.06 1.89 6.77 42.01 0.28 2.18 16 9 N -0.53 -20.31 8.61 -187.25 -1.61 -21.92 16 10 C 0.24 7.78 8.01 179.31 1.44 9.22 16 11 N -0.63 -18.97 5.40 -313.94 -1.70 -20.67 16 12 C 0.51 20.69 7.79 87.66 0.68 21.37 16 13 O -0.52 -27.81 14.62 -3.03 -0.04 -27.86 16 14 C -0.11 -4.38 5.64 29.85 0.17 -4.21 16 15 C 0.04 2.28 4.26 29.85 0.13 2.41 16 16 C -0.54 -30.77 9.11 25.60 0.23 -30.53 16 17 H 0.08 4.10 7.74 -2.91 -0.02 4.07 16 18 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 19 N -0.94 -60.25 13.29 21.45 0.28 -59.97 16 20 Si 0.98 44.41 29.54 68.60 2.03 46.44 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 24 S 0.18 3.74 23.20 -56.49 -1.31 2.43 16 25 C -0.24 -5.37 6.38 24.92 0.16 -5.21 16 26 C -0.03 -0.37 5.04 30.04 0.15 -0.22 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.40 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.52 6.84 -2.39 -0.02 0.50 16 32 H 0.07 0.57 8.12 -2.38 -0.02 0.55 16 33 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 34 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 36 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.44 8.66 8.82 -92.71 -0.82 7.84 16 39 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 40 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 41 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 42 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 43 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.09 1.02 7.16 -2.39 -0.02 1.00 16 45 H 0.09 1.07 8.10 -2.39 -0.02 1.05 16 Total: -1.00 -83.90 377.28 2.88 -81.03 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.17 Total: 11.05 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.06 Total: -10.54 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -3.02 Total: -102.55 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.04 Total: -27.86 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.31 Total: 2.43 kcal Total: -83.90 2.88 -81.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330902985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.443 kcal (2) G-P(sol) polarization free energy of solvation -83.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds