Wall clock time and date at job start Tue Mar 31 2020 12:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29021 * 124.91721 * 2 1 4 4 C 1.31784 * 117.12415 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.75129 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46823 * 305.02272 * 5 4 3 7 7 C 1.52998 * 109.46676 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47034 * 179.97438 * 7 6 5 9 9 O 1.21298 * 119.99749 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00141 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00281 * 359.97438 * 10 8 7 12 12 H 1.08001 * 119.99658 * 233.92401 * 11 10 8 13 13 C 1.38943 * 119.99783 * 53.91545 * 11 10 8 14 14 N 1.31410 * 120.00274 * 22.96768 * 13 11 10 15 15 Si 1.86807 * 120.00037 * 202.96579 * 13 11 10 16 16 H 1.48494 * 109.46996 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47293 * 120.00504 * 15 13 11 18 18 H 1.48503 * 109.46984 * 240.00275 * 15 13 11 19 19 C 1.46504 * 119.99923 * 180.02562 * 10 8 7 20 20 C 1.54270 * 110.03294 * 239.37563 * 19 10 8 21 21 C 1.54964 * 104.16068 * 217.13626 * 20 19 10 22 22 C 1.54898 * 102.77600 * 37.88935 * 21 20 19 23 23 C 1.53873 * 110.03468 * 122.15995 * 19 10 8 24 24 C 1.33639 * 114.50027 * 0.22434 * 4 3 2 25 25 S 1.70978 * 124.91304 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47504 * 90.00185 * 1 2 3 27 27 H 1.08998 * 109.47138 * 210.00673 * 1 2 3 28 28 H 1.09007 * 109.46799 * 330.00269 * 1 2 3 29 29 H 1.08991 * 109.47187 * 185.01685 * 5 4 3 30 30 H 1.09006 * 109.47061 * 65.01650 * 5 4 3 31 31 H 1.09006 * 109.46794 * 299.99541 * 6 5 4 32 32 H 1.08998 * 109.47101 * 59.99943 * 6 5 4 33 33 H 1.08998 * 109.47319 * 299.99691 * 7 6 5 34 34 H 1.08998 * 109.47331 * 60.00170 * 7 6 5 35 35 H 0.97002 * 120.00013 * 174.68909 * 14 13 11 36 36 H 1.09002 * 110.01860 * 0.76894 * 19 10 8 37 37 H 1.09004 * 110.48514 * 335.78119 * 20 19 10 38 38 H 1.08997 * 110.48873 * 98.42457 * 20 19 10 39 39 H 1.08998 * 110.72026 * 279.57263 * 21 20 19 40 40 H 1.09004 * 110.92068 * 156.29107 * 21 20 19 41 41 H 1.09003 * 110.48148 * 203.40589 * 22 21 20 42 42 H 1.09001 * 110.59894 * 80.81944 * 22 21 20 43 43 H 1.08992 * 110.03538 * 238.57203 * 23 19 10 44 44 H 1.09012 * 110.03202 * 359.97438 * 23 19 10 45 45 H 1.08001 * 126.03844 * 179.77511 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0245 -0.0012 6 6 4.2327 2.9499 -1.1825 7 6 5.2269 4.1129 -1.1828 8 6 4.9337 5.0241 -2.3468 9 8 4.0197 4.7682 -3.1021 10 7 5.6875 6.1227 -2.5490 11 6 6.7209 6.4118 -1.6956 12 1 6.7733 7.3797 -1.2195 13 6 7.7005 5.4593 -1.4432 14 7 7.9167 4.4939 -2.3082 15 14 8.7102 5.5510 0.1258 16 1 8.2744 6.7228 0.9270 17 1 8.5107 4.3097 0.9162 18 1 10.1478 5.6930 -0.2183 19 6 5.4021 7.0089 -3.6803 20 6 6.6349 7.1015 -4.6031 21 6 6.6450 8.5775 -5.0751 22 6 6.1943 9.3455 -3.8077 23 6 5.1218 8.4350 -3.1751 24 6 3.9354 -0.4007 -0.0058 25 16 2.4856 -1.4021 0.0006 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 5.5448 1.6351 -0.0914 30 1 4.4376 2.5829 0.9303 31 1 4.3260 2.3915 -2.1140 32 1 3.2186 3.3392 -1.0922 33 1 5.1332 4.6711 -0.2513 34 1 6.2411 3.7239 -1.2729 35 1 8.6506 3.8747 -2.1704 36 1 4.5442 6.6355 -4.2395 37 1 7.5448 6.8724 -4.0484 38 1 6.5260 6.4289 -5.4538 39 1 5.9363 8.7267 -5.8897 40 1 7.6471 8.8831 -5.3760 41 1 5.7645 10.3099 -4.0788 42 1 7.0318 9.4810 -3.1233 43 1 4.1282 8.7541 -3.4898 44 1 5.1976 8.4678 -2.0881 45 1 4.9545 -0.7582 -0.0105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332280320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:04 Heat of formation + Delta-G solvation = -12.389327 kcal Electronic energy + Delta-G solvation = -25167.898580 eV Core-core repulsion = 21697.312526 eV Total energy + Delta-G solvation = -3470.586053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.85047 -38.86780 -36.70906 -34.19871 -34.04181 -31.86958 -31.28559 -28.63246 -27.89849 -27.56249 -26.37798 -24.63499 -22.98002 -21.39491 -19.94791 -19.62270 -19.26418 -19.16737 -17.42204 -16.36785 -15.69617 -15.28757 -15.16588 -15.01263 -14.58865 -14.39123 -14.24684 -13.83792 -13.48671 -13.17634 -12.94916 -12.73743 -12.56724 -12.36732 -12.20663 -11.95412 -11.64053 -11.40709 -11.21733 -11.07262 -10.79261 -10.72477 -10.50842 -10.43982 -10.35007 -10.34341 -10.30062 -9.95608 -9.89319 -9.58147 -9.51826 -9.35008 -8.73527 -8.57311 -8.15965 -7.18628 -6.38816 -4.16807 0.77251 1.40250 1.76683 2.91319 3.08854 3.20702 3.24146 4.05724 4.11621 4.26078 4.84680 4.88219 4.98123 5.25932 5.26119 5.33531 5.40025 5.42291 5.43250 5.60689 5.72644 5.77540 5.88965 5.95669 6.13246 6.26755 6.33928 6.36037 6.38612 6.42562 6.43423 6.46709 6.56353 6.60145 6.69821 6.79032 6.89261 6.99972 7.08430 7.19246 7.30972 7.37976 7.51427 7.87739 8.09103 8.70298 8.97242 9.69831 10.13733 10.64805 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.003238 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.101826 B = 8645.727307 C = 9801.498199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.050 3.950 3 N -0.461 5.461 4 C 0.087 3.913 5 C -0.047 4.047 6 C -0.089 4.089 7 C -0.130 4.130 8 C 0.514 3.486 9 O -0.614 6.614 10 N -0.449 5.449 11 C -0.335 4.335 12 H 0.081 0.919 13 C 0.056 3.944 14 N -0.852 5.852 15 Si 0.898 3.102 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.282 1.282 19 C 0.132 3.868 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.263 4.263 25 S 0.087 5.913 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.270 0.730 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 -6.386 4.555 9.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.229 4.229 3 N -0.176 5.176 4 C -0.044 4.044 5 C -0.088 4.088 6 C -0.128 4.128 7 C -0.169 4.169 8 C 0.304 3.696 9 O -0.500 6.500 10 N -0.169 5.169 11 C -0.463 4.463 12 H 0.098 0.902 13 C -0.151 4.151 14 N -0.487 5.487 15 Si 0.724 3.276 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.207 1.207 19 C 0.028 3.972 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.153 4.153 23 C -0.165 4.165 24 C -0.401 4.401 25 S 0.340 5.660 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.983 -7.266 4.184 10.912 hybrid contribution 1.552 0.601 0.668 1.793 sum -5.431 -6.665 4.852 9.872 Atomic orbital electron populations 1.20432 0.85339 1.03973 1.03917 1.27064 1.01707 0.90742 1.03375 1.66089 1.04780 1.31236 1.15540 1.20472 0.90102 0.94477 0.99331 1.20340 0.95040 0.92577 1.00794 1.21206 1.00077 0.95449 0.96063 1.21658 1.02252 0.95351 0.97673 1.20358 0.80583 0.82427 0.86186 1.90487 1.33853 1.75330 1.50379 1.43415 1.27839 1.22105 1.23553 1.19104 1.03850 1.01693 1.21668 0.90172 1.25546 0.95996 0.96255 0.97345 1.70006 1.28649 1.17216 1.32866 0.86338 0.79465 0.78903 0.82926 1.19002 1.20135 1.20748 1.21549 0.97060 0.89760 0.88850 1.22588 1.00880 0.94033 0.98303 1.22457 0.99872 0.96785 0.96993 1.22249 0.98799 0.97140 0.97148 1.22396 0.97295 0.95485 1.01344 1.26800 1.02744 0.95585 1.14975 1.83763 0.98795 1.13569 1.69838 0.89575 0.90335 0.89247 0.90358 0.90283 0.92309 0.91493 0.90868 0.87214 0.92006 0.90628 0.89096 0.93265 0.92648 0.92514 0.93083 0.91709 0.93088 0.91091 0.80687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.46 36.01 0.38 -0.32 16 2 C 0.05 0.66 7.39 -13.46 -0.10 0.56 16 3 N -0.46 -7.61 10.34 -8.05 -0.08 -7.70 16 4 C 0.09 1.41 6.08 -84.22 -0.51 0.89 16 5 C -0.05 -0.80 5.71 -27.88 -0.16 -0.96 16 6 C -0.09 -1.84 4.40 -26.73 -0.12 -1.96 16 7 C -0.13 -2.94 4.12 -27.88 -0.11 -3.06 16 8 C 0.51 13.33 7.19 -10.99 -0.08 13.25 16 9 O -0.61 -17.33 15.33 5.54 0.08 -17.24 16 10 N -0.45 -11.15 2.35 -106.54 -0.25 -11.41 16 11 C -0.34 -8.18 6.92 -14.93 -0.10 -8.28 16 12 H 0.08 1.94 7.17 -52.49 -0.38 1.56 16 13 C 0.06 1.33 3.46 -17.47 -0.06 1.27 16 14 N -0.85 -21.61 11.69 55.50 0.65 -20.96 16 15 Si 0.90 18.61 29.61 -169.99 -5.03 13.57 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 19 C 0.13 2.97 3.29 -66.81 -0.22 2.75 16 20 C -0.12 -2.52 6.42 -25.03 -0.16 -2.68 16 21 C -0.12 -2.08 6.91 -24.69 -0.17 -2.25 16 22 C -0.12 -1.93 6.83 -25.07 -0.17 -2.10 16 23 C -0.13 -2.43 6.25 -25.62 -0.16 -2.59 16 24 C -0.26 -3.58 11.07 29.12 0.32 -3.26 16 25 S 0.09 1.00 23.18 -107.50 -2.49 -1.49 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 29 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 32 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 33 H 0.07 1.58 8.10 -51.93 -0.42 1.16 16 34 H 0.11 2.61 5.09 -51.93 -0.26 2.35 16 35 H 0.27 6.47 8.32 -40.82 -0.34 6.13 16 36 H 0.08 1.83 6.94 -51.93 -0.36 1.46 16 37 H 0.09 2.15 7.10 -51.93 -0.37 1.78 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.43 6.83 -51.92 -0.35 1.08 16 45 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -29.55 373.52 -10.11 -39.66 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.18 Total: 8.64 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.43 Total: -8.71 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.31 Total: -40.06 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.08 Total: -17.24 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.55 -10.11 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332280320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.271 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds