Wall clock time and date at job start Tue Mar 31 2020 12:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29021 * 124.91721 * 2 1 4 4 C 1.31784 * 117.12415 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.75129 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46823 * 305.02272 * 5 4 3 7 7 C 1.52998 * 109.46676 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47034 * 179.97438 * 7 6 5 9 9 O 1.21298 * 119.99749 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00141 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00281 * 359.97438 * 10 8 7 12 12 H 1.08001 * 119.99658 * 233.92401 * 11 10 8 13 13 C 1.38943 * 119.99783 * 53.91545 * 11 10 8 14 14 N 1.31410 * 120.00274 * 22.96768 * 13 11 10 15 15 Si 1.86807 * 120.00037 * 202.96579 * 13 11 10 16 16 H 1.48494 * 109.46996 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47293 * 120.00504 * 15 13 11 18 18 H 1.48503 * 109.46984 * 240.00275 * 15 13 11 19 19 C 1.46504 * 119.99923 * 180.02562 * 10 8 7 20 20 C 1.54270 * 110.03294 * 239.37563 * 19 10 8 21 21 C 1.54964 * 104.16068 * 217.13626 * 20 19 10 22 22 C 1.54898 * 102.77600 * 37.88935 * 21 20 19 23 23 C 1.53873 * 110.03468 * 122.15995 * 19 10 8 24 24 C 1.33639 * 114.50027 * 0.22434 * 4 3 2 25 25 S 1.70978 * 124.91304 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47504 * 90.00185 * 1 2 3 27 27 H 1.08998 * 109.47138 * 210.00673 * 1 2 3 28 28 H 1.09007 * 109.46799 * 330.00269 * 1 2 3 29 29 H 1.08991 * 109.47187 * 185.01685 * 5 4 3 30 30 H 1.09006 * 109.47061 * 65.01650 * 5 4 3 31 31 H 1.09006 * 109.46794 * 299.99541 * 6 5 4 32 32 H 1.08998 * 109.47101 * 59.99943 * 6 5 4 33 33 H 1.08998 * 109.47319 * 299.99691 * 7 6 5 34 34 H 1.08998 * 109.47331 * 60.00170 * 7 6 5 35 35 H 0.97002 * 120.00013 * 174.68909 * 14 13 11 36 36 H 1.09002 * 110.01860 * 0.76894 * 19 10 8 37 37 H 1.09004 * 110.48514 * 335.78119 * 20 19 10 38 38 H 1.08997 * 110.48873 * 98.42457 * 20 19 10 39 39 H 1.08998 * 110.72026 * 279.57263 * 21 20 19 40 40 H 1.09004 * 110.92068 * 156.29107 * 21 20 19 41 41 H 1.09003 * 110.48148 * 203.40589 * 22 21 20 42 42 H 1.09001 * 110.59894 * 80.81944 * 22 21 20 43 43 H 1.08992 * 110.03538 * 238.57203 * 23 19 10 44 44 H 1.09012 * 110.03202 * 359.97438 * 23 19 10 45 45 H 1.08001 * 126.03844 * 179.77511 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0245 -0.0012 6 6 4.2327 2.9499 -1.1825 7 6 5.2269 4.1129 -1.1828 8 6 4.9337 5.0241 -2.3468 9 8 4.0197 4.7682 -3.1021 10 7 5.6875 6.1227 -2.5490 11 6 6.7209 6.4118 -1.6956 12 1 6.7733 7.3797 -1.2195 13 6 7.7005 5.4593 -1.4432 14 7 7.9167 4.4939 -2.3082 15 14 8.7102 5.5510 0.1258 16 1 8.2744 6.7228 0.9270 17 1 8.5107 4.3097 0.9162 18 1 10.1478 5.6930 -0.2183 19 6 5.4021 7.0089 -3.6803 20 6 6.6349 7.1015 -4.6031 21 6 6.6450 8.5775 -5.0751 22 6 6.1943 9.3455 -3.8077 23 6 5.1218 8.4350 -3.1751 24 6 3.9354 -0.4007 -0.0058 25 16 2.4856 -1.4021 0.0006 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 5.5448 1.6351 -0.0914 30 1 4.4376 2.5829 0.9303 31 1 4.3260 2.3915 -2.1140 32 1 3.2186 3.3392 -1.0922 33 1 5.1332 4.6711 -0.2513 34 1 6.2411 3.7239 -1.2729 35 1 8.6506 3.8747 -2.1704 36 1 4.5442 6.6355 -4.2395 37 1 7.5448 6.8724 -4.0484 38 1 6.5260 6.4289 -5.4538 39 1 5.9363 8.7267 -5.8897 40 1 7.6471 8.8831 -5.3760 41 1 5.7645 10.3099 -4.0788 42 1 7.0318 9.4810 -3.1233 43 1 4.1282 8.7541 -3.4898 44 1 5.1976 8.4678 -2.0881 45 1 4.9545 -0.7582 -0.0105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332280320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:03 Heat of formation + Delta-G solvation = -27.692051 kcal Electronic energy + Delta-G solvation = -25168.562155 eV Core-core repulsion = 21697.312526 eV Total energy + Delta-G solvation = -3471.249629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01579 -40.69077 -38.44420 -35.98417 -35.60018 -33.34941 -32.86830 -29.83906 -29.47295 -28.97006 -27.93768 -26.49993 -24.21669 -22.84952 -21.42260 -21.11483 -20.97392 -20.66892 -18.65363 -18.14481 -17.46377 -17.07163 -16.56489 -16.22594 -16.13716 -15.96004 -15.77439 -15.24527 -14.80830 -14.60869 -14.31621 -14.15908 -14.02266 -13.70599 -13.47183 -13.27535 -13.06187 -13.00971 -12.84279 -12.62128 -12.45011 -12.36926 -12.19414 -12.00995 -11.94416 -11.88117 -11.82856 -11.62933 -11.38413 -11.32224 -10.64530 -10.57901 -10.36724 -10.17506 -9.60137 -9.13476 -8.27430 -6.12784 -0.24422 0.44234 0.73887 1.43456 1.51217 1.61416 1.78942 2.18782 2.36682 2.99747 3.05781 3.17408 3.86561 3.90792 3.93887 4.02753 4.14471 4.24084 4.30638 4.39714 4.54046 4.57964 4.61954 4.65364 4.68847 4.76072 4.79594 4.82009 4.88810 4.91525 4.95082 4.98694 5.07264 5.09975 5.16600 5.23685 5.27674 5.34214 5.43897 5.49083 5.52013 5.59186 5.65887 6.18524 6.74959 6.84010 7.05696 7.70942 8.17715 8.77489 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.003238 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.101826 B = 8645.727307 C = 9801.498199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.035 3.965 3 N -0.507 5.507 4 C 0.057 3.943 5 C -0.038 4.038 6 C -0.072 4.072 7 C -0.119 4.119 8 C 0.489 3.511 9 O -0.651 6.651 10 N -0.450 5.450 11 C -0.349 4.349 12 H 0.084 0.916 13 C 0.028 3.972 14 N -0.882 5.882 15 Si 0.959 3.041 16 H -0.259 1.259 17 H -0.268 1.268 18 H -0.281 1.281 19 C 0.117 3.883 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.107 4.107 23 C -0.121 4.121 24 C -0.270 4.270 25 S 0.155 5.845 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.273 0.727 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.771 -6.460 5.654 10.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.243 4.243 3 N -0.223 5.223 4 C -0.074 4.074 5 C -0.078 4.078 6 C -0.111 4.111 7 C -0.159 4.159 8 C 0.281 3.719 9 O -0.540 6.540 10 N -0.169 5.169 11 C -0.476 4.476 12 H 0.101 0.899 13 C -0.177 4.177 14 N -0.518 5.518 15 Si 0.783 3.217 16 H -0.183 1.183 17 H -0.193 1.193 18 H -0.206 1.206 19 C 0.013 3.987 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.159 4.159 24 C -0.408 4.408 25 S 0.409 5.591 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.597 -7.322 5.284 11.182 hybrid contribution 1.394 0.551 0.252 1.520 sum -5.202 -6.771 5.536 10.176 Atomic orbital electron populations 1.20622 0.82928 1.05356 1.04852 1.27730 1.03399 0.91080 1.02119 1.66079 1.05295 1.33367 1.17601 1.20363 0.90209 0.95008 1.01856 1.20178 0.96143 0.92535 0.98975 1.20975 0.98289 0.95079 0.96712 1.21581 1.02150 0.95455 0.96698 1.21023 0.80512 0.83399 0.86984 1.90442 1.35400 1.76358 1.51824 1.43632 1.27457 1.21895 1.23883 1.19292 1.03955 1.02186 1.22215 0.89882 1.26190 0.96702 0.95373 0.99473 1.70098 1.29290 1.17878 1.34496 0.85402 0.77745 0.79283 0.79294 1.18304 1.19342 1.20645 1.21802 0.96796 0.91341 0.88713 1.22472 0.98590 0.97191 0.97151 1.22423 1.01691 0.93146 0.97655 1.22220 0.97803 0.97915 0.96484 1.22331 0.99229 0.93721 1.00627 1.27128 1.04868 0.95502 1.13351 1.83465 0.96337 1.11196 1.68109 0.88725 0.87297 0.89532 0.89232 0.89715 0.94941 0.93506 0.90013 0.88026 0.91687 0.93248 0.91937 0.94623 0.90787 0.90552 0.89599 0.91987 0.91673 0.92362 0.78809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.46 71.24 0.75 -0.56 16 2 C 0.03 0.88 7.39 88.52 0.65 1.53 16 3 N -0.51 -16.93 10.34 -179.40 -1.86 -18.78 16 4 C 0.06 1.83 6.08 41.52 0.25 2.09 16 5 C -0.04 -1.32 5.71 29.85 0.17 -1.15 16 6 C -0.07 -3.11 4.40 30.59 0.13 -2.98 16 7 C -0.12 -5.62 4.12 29.85 0.12 -5.50 16 8 C 0.49 26.66 7.19 87.66 0.63 27.29 16 9 O -0.65 -38.97 15.33 -3.08 -0.05 -39.02 16 10 N -0.45 -23.18 2.35 -609.37 -1.43 -24.61 16 11 C -0.35 -17.29 6.92 84.04 0.58 -16.71 16 12 H 0.08 4.02 7.17 -2.91 -0.02 4.00 16 13 C 0.03 1.32 3.46 84.92 0.29 1.62 16 14 N -0.88 -45.52 11.69 21.66 0.25 -45.27 16 15 Si 0.96 37.64 29.61 68.60 2.03 39.68 16 16 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 17 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 18 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 19 C 0.12 5.45 3.29 45.72 0.15 5.60 16 20 C -0.12 -4.95 6.42 31.70 0.20 -4.75 16 21 C -0.11 -3.55 6.91 31.91 0.22 -3.33 16 22 C -0.11 -3.30 6.83 31.67 0.22 -3.08 16 23 C -0.12 -4.57 6.25 31.32 0.20 -4.37 16 24 C -0.27 -7.04 11.07 66.78 0.74 -6.30 16 25 S 0.15 3.24 23.18 -56.49 -1.31 1.93 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.09 2.80 8.03 -2.39 -0.02 2.78 16 30 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 31 H 0.03 1.53 8.10 -2.38 -0.02 1.51 16 32 H 0.05 2.17 8.03 -2.39 -0.02 2.15 16 33 H 0.08 3.64 8.10 -2.39 -0.02 3.62 16 34 H 0.10 4.98 5.09 -2.39 -0.01 4.97 16 35 H 0.27 13.25 8.32 -92.71 -0.77 12.48 16 36 H 0.05 2.51 6.94 -2.39 -0.02 2.50 16 37 H 0.06 3.03 7.10 -2.38 -0.02 3.01 16 38 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.06 2.34 6.83 -2.38 -0.02 2.32 16 45 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -67.28 373.52 3.92 -63.35 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.97 Total: 33.31 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 5.31 Total: -10.58 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -3.04 Total: -88.66 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.05 Total: -39.02 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.68 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.31 Total: 1.93 kcal Total: -67.28 3.92 -63.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332280320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.662 kcal (2) G-P(sol) polarization free energy of solvation -67.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds