Wall clock time and date at job start Tue Mar 31 2020 13:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47493 * 2 1 4 4 C 1.52999 * 109.47569 * 239.99701 * 2 1 3 5 5 C 1.50706 * 109.46899 * 119.99549 * 2 1 3 6 6 N 1.30943 * 122.90245 * 244.77420 * 5 2 1 7 7 C 1.29432 * 117.35826 * 180.34692 * 6 5 2 8 8 S 1.70955 * 110.39303 * 359.71201 * 7 6 5 9 9 C 1.35653 * 122.90295 * 64.58697 * 5 2 1 10 10 C 1.46690 * 126.13320 * 359.95946 * 9 5 2 11 11 O 1.21683 * 119.99646 * 276.44817 * 10 9 5 12 12 N 1.34775 * 119.99731 * 96.44118 * 10 9 5 13 13 C 1.46929 * 120.62645 * 175.56220 * 12 10 9 14 14 C 1.53191 * 108.89025 * 233.51801 * 13 12 10 15 15 C 1.53073 * 109.29882 * 305.57901 * 14 13 12 16 16 C 1.50696 * 109.45406 * 181.24405 * 15 14 13 17 17 H 1.07997 * 120.00255 * 239.78628 * 16 15 14 18 18 C 1.37886 * 119.99966 * 59.79245 * 16 15 14 19 19 N 1.31514 * 119.99651 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99962 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46942 * 89.99961 * 20 18 16 22 22 H 1.48494 * 109.47224 * 209.99683 * 20 18 16 23 23 H 1.48502 * 109.47397 * 329.99977 * 20 18 16 24 24 C 1.53043 * 109.65729 * 61.15490 * 15 14 13 25 25 C 1.46924 * 120.63420 * 355.54736 * 12 10 9 26 26 H 1.09001 * 109.47435 * 294.59663 * 1 2 3 27 27 H 1.08998 * 109.46641 * 54.59600 * 1 2 3 28 28 H 1.09003 * 109.47086 * 174.58878 * 1 2 3 29 29 H 1.08994 * 109.47672 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47011 * 299.99815 * 3 2 1 31 31 H 1.09005 * 109.47195 * 59.99109 * 3 2 1 32 32 H 1.08997 * 109.46736 * 305.90413 * 4 2 1 33 33 H 1.08994 * 109.46895 * 65.90343 * 4 2 1 34 34 H 1.09000 * 109.47238 * 185.90629 * 4 2 1 35 35 H 1.08007 * 124.80072 * 179.73353 * 7 6 5 36 36 H 1.09000 * 109.58816 * 353.37926 * 13 12 10 37 37 H 1.08996 * 109.58396 * 113.66103 * 13 12 10 38 38 H 1.09003 * 109.49934 * 65.39422 * 14 13 12 39 39 H 1.09004 * 109.49823 * 185.48514 * 14 13 12 40 40 H 1.09004 * 109.34869 * 301.12980 * 15 14 13 41 41 H 0.97002 * 119.99063 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.49724 * 178.75055 * 24 15 14 43 43 H 1.08999 * 109.51996 * 58.66786 * 24 15 14 44 44 H 1.09001 * 109.58423 * 246.19854 * 25 12 10 45 45 H 1.09003 * 109.58872 * 6.48023 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2306 6 7 2.7111 -0.1062 2.1733 7 6 3.0961 -0.8218 3.1808 8 16 2.5779 -2.4402 2.9947 9 6 1.8170 -2.0301 1.4591 10 6 1.0872 -2.9520 0.5821 11 8 -0.1266 -3.0144 0.6403 12 7 1.7611 -3.7297 -0.2883 13 6 1.0542 -4.7265 -1.1040 14 6 1.7212 -6.0915 -0.9074 15 6 3.2167 -5.9722 -1.2116 16 6 3.8710 -7.3199 -1.0489 17 1 4.6661 -7.4510 -0.3298 18 6 3.4547 -8.3858 -1.8182 19 7 2.4862 -8.2264 -2.6935 20 14 4.2662 -10.0562 -1.6170 21 1 3.5401 -10.8382 -0.5841 22 1 4.2250 -10.7856 -2.9098 23 1 5.6788 -9.8730 -1.1969 24 6 3.8602 -4.9733 -0.2471 25 6 3.2164 -3.5966 -0.4396 26 1 -0.3634 0.4277 0.9344 27 1 -0.3632 0.5954 -0.8376 28 1 -0.3633 -1.0231 -0.0969 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.5930 -1.7139 -1.3035 33 1 1.7656 -0.1501 -2.1360 34 1 3.1249 -0.8137 -1.1978 35 1 3.6642 -0.4490 4.0204 36 1 0.0113 -4.7811 -0.7917 37 1 1.1065 -4.4422 -2.1549 38 1 1.5866 -6.4171 0.1241 39 1 1.2675 -6.8186 -1.5809 40 1 3.3502 -5.6253 -2.2363 41 1 2.1931 -8.9764 -3.2344 42 1 4.9288 -4.9070 -0.4515 43 1 3.7060 -5.3067 0.7791 44 1 3.4473 -3.2214 -1.4367 45 1 3.5999 -2.9037 0.3093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334202591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:39 Heat of formation + Delta-G solvation = -1.924016 kcal Electronic energy + Delta-G solvation = -26443.392235 eV Core-core repulsion = 22973.259991 eV Total energy + Delta-G solvation = -3470.132243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85309 -39.22538 -36.88701 -36.08602 -33.64187 -31.37420 -30.83932 -29.65101 -27.40899 -27.21413 -26.46786 -25.53485 -23.24935 -22.55121 -21.71013 -20.70058 -19.16211 -18.20369 -17.74703 -16.92400 -16.37827 -15.87894 -15.12676 -14.91617 -14.79481 -14.58994 -14.12137 -13.69705 -13.61078 -13.46685 -13.17078 -12.85103 -12.74469 -12.44392 -12.34890 -12.15771 -12.05779 -11.82997 -11.57527 -11.25074 -11.02828 -10.98966 -10.96438 -10.70900 -10.66041 -10.47351 -10.16661 -10.02623 -9.68220 -9.63663 -9.49300 -9.19615 -8.99840 -8.87304 -8.42325 -8.11638 -6.06358 -4.12998 0.42611 1.04296 1.54961 2.61155 2.92061 3.26125 3.33591 3.35820 3.37169 3.98562 4.37826 4.60551 4.79147 4.83968 4.95481 5.20931 5.23628 5.30974 5.34859 5.62781 5.66361 5.70352 5.78153 5.80089 5.84244 5.87749 5.95314 5.95952 6.08816 6.15576 6.22436 6.31181 6.33997 6.34529 6.41926 6.54673 6.73244 6.87710 7.10686 7.25204 7.55172 7.64050 7.71661 7.86583 8.00258 8.31786 8.35805 8.90174 9.52453 10.99134 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020302 B = 0.003808 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.835624 B = 7351.951934 C = 7869.327642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.004 3.996 3 C -0.125 4.125 4 C -0.151 4.151 5 C 0.116 3.884 6 N -0.461 5.461 7 C 0.008 3.992 8 S 0.184 5.816 9 C -0.261 4.261 10 C 0.594 3.406 11 O -0.533 6.533 12 N -0.584 5.584 13 C 0.109 3.891 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.514 4.514 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.123 4.123 25 C 0.107 3.893 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.202 0.798 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.107 0.893 40 H 0.028 0.972 41 H 0.261 0.739 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 15.848 7.336 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.001 3.999 3 C -0.183 4.183 4 C -0.209 4.209 5 C -0.020 4.020 6 N -0.174 5.174 7 C -0.287 4.287 8 S 0.439 5.561 9 C -0.385 4.385 10 C 0.378 3.622 11 O -0.412 6.412 12 N -0.316 5.316 13 C -0.012 4.012 14 C -0.161 4.161 15 C 0.031 3.969 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.162 4.162 25 C -0.016 4.016 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.219 0.781 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.125 0.875 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.010 15.346 7.889 17.255 hybrid contribution 0.336 -0.537 -0.394 0.746 sum 0.346 14.809 7.494 16.601 Atomic orbital electron populations 1.22069 0.92737 1.04187 1.01680 1.19229 0.96014 0.95244 0.89421 1.21690 1.01293 0.93775 1.01508 1.22145 1.01403 1.01333 0.96022 1.20393 0.96638 0.88580 0.96376 1.65963 1.12648 1.37348 1.01424 1.28593 1.04333 0.94191 1.01617 1.84199 1.45397 1.12069 1.14453 1.25463 1.11492 0.99188 1.02396 1.16721 0.86392 0.79471 0.79581 1.90784 1.12866 1.67640 1.69907 1.48237 1.08711 1.35755 1.38907 1.21999 0.96567 0.89147 0.93507 1.22046 0.99239 0.93485 1.01334 1.18638 0.91162 0.93186 0.93918 1.21166 1.18734 0.94272 1.21037 0.92699 1.24956 0.95042 0.98855 0.95025 1.69835 1.28004 1.31396 1.23628 0.86619 0.79865 0.84218 0.77448 1.20726 1.21233 1.19965 1.22023 0.99319 0.93475 1.01342 1.21931 0.79097 0.99407 1.01183 0.92759 0.92046 0.90348 0.92337 0.92667 0.92186 0.91290 0.91607 0.92279 0.78090 0.90391 0.91820 0.94295 0.87547 0.95377 0.92908 0.91921 0.92818 0.91390 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.26 37.16 0.31 -1.65 16 2 C 0.00 0.05 0.76 -155.66 -0.12 -0.07 16 3 C -0.13 -1.37 7.82 37.16 0.29 -1.08 16 4 C -0.15 -1.91 7.36 37.16 0.27 -1.64 16 5 C 0.12 1.63 5.45 -83.89 -0.46 1.17 16 6 N -0.46 -5.93 9.52 -11.53 -0.11 -6.04 16 7 C 0.01 0.09 12.22 51.75 0.63 0.72 16 8 S 0.18 2.23 23.11 -107.50 -2.48 -0.26 16 9 C -0.26 -3.93 3.95 -37.10 -0.15 -4.08 16 10 C 0.59 10.38 4.74 -12.85 -0.06 10.32 16 11 O -0.53 -10.69 14.62 5.20 0.08 -10.62 16 12 N -0.58 -10.18 2.05 -174.31 -0.36 -10.54 16 13 C 0.11 2.07 6.42 -3.71 -0.02 2.05 16 14 C -0.12 -2.72 5.16 -26.59 -0.14 -2.86 16 15 C 0.05 1.13 2.06 -91.71 -0.19 0.94 16 16 C -0.51 -13.31 8.56 -34.44 -0.29 -13.61 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 19 N -0.89 -24.17 11.30 55.43 0.63 -23.54 16 20 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.12 -2.33 5.30 -26.61 -0.14 -2.47 16 25 C 0.11 1.72 5.14 -3.71 -0.02 1.70 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.23 5.24 -51.93 -0.27 0.96 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.07 1.00 4.69 -51.93 -0.24 0.76 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.20 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.08 1.51 7.03 -51.93 -0.37 1.14 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 2.65 6.03 -51.93 -0.31 2.33 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 45 H 0.06 0.95 6.24 -51.93 -0.32 0.63 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -28.86 358.98 -9.01 -37.87 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.97 Total: 1.16 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.18 Total: -8.98 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.16 Total: -40.13 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.48 Total: -0.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.86 -9.01 -37.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334202591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.946 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds