Wall clock time and date at job start Tue Mar 31 2020 13:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47493 * 2 1 4 4 C 1.52999 * 109.47569 * 239.99701 * 2 1 3 5 5 C 1.50706 * 109.46899 * 119.99549 * 2 1 3 6 6 N 1.30943 * 122.90245 * 244.77420 * 5 2 1 7 7 C 1.29432 * 117.35826 * 180.34692 * 6 5 2 8 8 S 1.70955 * 110.39303 * 359.71201 * 7 6 5 9 9 C 1.35653 * 122.90295 * 64.58697 * 5 2 1 10 10 C 1.46690 * 126.13320 * 359.95946 * 9 5 2 11 11 O 1.21683 * 119.99646 * 276.44817 * 10 9 5 12 12 N 1.34775 * 119.99731 * 96.44118 * 10 9 5 13 13 C 1.46929 * 120.62645 * 175.56220 * 12 10 9 14 14 C 1.53191 * 108.89025 * 233.51801 * 13 12 10 15 15 C 1.53073 * 109.29882 * 305.57901 * 14 13 12 16 16 C 1.50696 * 109.45406 * 181.24405 * 15 14 13 17 17 H 1.07997 * 120.00255 * 239.78628 * 16 15 14 18 18 C 1.37886 * 119.99966 * 59.79245 * 16 15 14 19 19 N 1.31514 * 119.99651 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99962 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46942 * 89.99961 * 20 18 16 22 22 H 1.48494 * 109.47224 * 209.99683 * 20 18 16 23 23 H 1.48502 * 109.47397 * 329.99977 * 20 18 16 24 24 C 1.53043 * 109.65729 * 61.15490 * 15 14 13 25 25 C 1.46924 * 120.63420 * 355.54736 * 12 10 9 26 26 H 1.09001 * 109.47435 * 294.59663 * 1 2 3 27 27 H 1.08998 * 109.46641 * 54.59600 * 1 2 3 28 28 H 1.09003 * 109.47086 * 174.58878 * 1 2 3 29 29 H 1.08994 * 109.47672 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47011 * 299.99815 * 3 2 1 31 31 H 1.09005 * 109.47195 * 59.99109 * 3 2 1 32 32 H 1.08997 * 109.46736 * 305.90413 * 4 2 1 33 33 H 1.08994 * 109.46895 * 65.90343 * 4 2 1 34 34 H 1.09000 * 109.47238 * 185.90629 * 4 2 1 35 35 H 1.08007 * 124.80072 * 179.73353 * 7 6 5 36 36 H 1.09000 * 109.58816 * 353.37926 * 13 12 10 37 37 H 1.08996 * 109.58396 * 113.66103 * 13 12 10 38 38 H 1.09003 * 109.49934 * 65.39422 * 14 13 12 39 39 H 1.09004 * 109.49823 * 185.48514 * 14 13 12 40 40 H 1.09004 * 109.34869 * 301.12980 * 15 14 13 41 41 H 0.97002 * 119.99063 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.49724 * 178.75055 * 24 15 14 43 43 H 1.08999 * 109.51996 * 58.66786 * 24 15 14 44 44 H 1.09001 * 109.58423 * 246.19854 * 25 12 10 45 45 H 1.09003 * 109.58872 * 6.48023 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2306 6 7 2.7111 -0.1062 2.1733 7 6 3.0961 -0.8218 3.1808 8 16 2.5779 -2.4402 2.9947 9 6 1.8170 -2.0301 1.4591 10 6 1.0872 -2.9520 0.5821 11 8 -0.1266 -3.0144 0.6403 12 7 1.7611 -3.7297 -0.2883 13 6 1.0542 -4.7265 -1.1040 14 6 1.7212 -6.0915 -0.9074 15 6 3.2167 -5.9722 -1.2116 16 6 3.8710 -7.3199 -1.0489 17 1 4.6661 -7.4510 -0.3298 18 6 3.4547 -8.3858 -1.8182 19 7 2.4862 -8.2264 -2.6935 20 14 4.2662 -10.0562 -1.6170 21 1 3.5401 -10.8382 -0.5841 22 1 4.2250 -10.7856 -2.9098 23 1 5.6788 -9.8730 -1.1969 24 6 3.8602 -4.9733 -0.2471 25 6 3.2164 -3.5966 -0.4396 26 1 -0.3634 0.4277 0.9344 27 1 -0.3632 0.5954 -0.8376 28 1 -0.3633 -1.0231 -0.0969 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.5930 -1.7139 -1.3035 33 1 1.7656 -0.1501 -2.1360 34 1 3.1249 -0.8137 -1.1978 35 1 3.6642 -0.4490 4.0204 36 1 0.0113 -4.7811 -0.7917 37 1 1.1065 -4.4422 -2.1549 38 1 1.5866 -6.4171 0.1241 39 1 1.2675 -6.8186 -1.5809 40 1 3.3502 -5.6253 -2.2363 41 1 2.1931 -8.9764 -3.2344 42 1 4.9288 -4.9070 -0.4515 43 1 3.7060 -5.3067 0.7791 44 1 3.4473 -3.2214 -1.4367 45 1 3.5999 -2.9037 0.3093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334202591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:38 Heat of formation + Delta-G solvation = -16.870535 kcal Electronic energy + Delta-G solvation = -26444.040364 eV Core-core repulsion = 22973.259991 eV Total energy + Delta-G solvation = -3470.780373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.98993 -40.49675 -38.44132 -37.05664 -35.41395 -33.08439 -32.29917 -30.94409 -28.34356 -28.22445 -28.09484 -26.68392 -24.85229 -24.05765 -22.88081 -21.99717 -20.64441 -19.44093 -18.82758 -18.52027 -17.92450 -17.25042 -16.53731 -16.32510 -15.95284 -15.81262 -15.24270 -14.97761 -14.86401 -14.74391 -14.62700 -14.45219 -14.23802 -13.87855 -13.45966 -13.28356 -13.17710 -13.07196 -12.94685 -12.82420 -12.59664 -12.45888 -12.18753 -12.00118 -11.97299 -11.89635 -11.67529 -11.44329 -11.35587 -11.05712 -10.85472 -10.70009 -10.41229 -10.39367 -9.86611 -9.63886 -8.07500 -6.20791 -0.54263 0.02650 0.61594 1.41789 1.44112 1.52502 1.59465 1.65136 2.01771 2.44399 3.08783 3.19816 3.42425 3.80141 3.96382 3.98735 4.00007 4.22941 4.28283 4.29274 4.38023 4.48708 4.51328 4.66559 4.69278 4.74231 4.83078 4.84293 4.85812 4.92898 4.96197 5.00355 5.10711 5.16566 5.20363 5.27757 5.33410 5.40719 5.46901 5.49403 5.65952 5.96848 6.09541 6.32326 6.38094 6.60527 6.89972 6.95848 7.47465 8.96083 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020302 B = 0.003808 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.835624 B = 7351.951934 C = 7869.327642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.002 4.002 3 C -0.117 4.117 4 C -0.148 4.148 5 C 0.125 3.875 6 N -0.479 5.479 7 C 0.039 3.961 8 S 0.191 5.809 9 C -0.303 4.303 10 C 0.601 3.399 11 O -0.566 6.566 12 N -0.586 5.586 13 C 0.121 3.879 14 C -0.110 4.110 15 C 0.047 3.953 16 C -0.531 4.531 17 H 0.053 0.947 18 C 0.016 3.984 19 N -0.914 5.914 20 Si 0.948 3.052 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.268 1.268 24 C -0.115 4.115 25 C 0.117 3.883 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.247 0.753 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.023 0.977 39 H 0.077 0.923 40 H 0.006 0.994 41 H 0.260 0.740 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 17.716 8.588 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.004 4.004 3 C -0.174 4.174 4 C -0.206 4.206 5 C -0.012 4.012 6 N -0.192 5.192 7 C -0.256 4.256 8 S 0.446 5.554 9 C -0.427 4.427 10 C 0.387 3.613 11 O -0.447 6.447 12 N -0.317 5.317 13 C -0.001 4.001 14 C -0.149 4.149 15 C 0.029 3.971 16 C -0.570 4.570 17 H 0.071 0.929 18 C -0.183 4.183 19 N -0.554 5.554 20 Si 0.775 3.225 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.192 1.192 24 C -0.153 4.153 25 C -0.005 4.005 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.095 0.905 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.650 17.218 9.152 19.569 hybrid contribution -0.157 -1.077 -0.713 1.302 sum 1.493 16.141 8.439 18.275 Atomic orbital electron populations 1.22000 0.93294 1.02614 1.02262 1.19335 0.95555 0.96391 0.89163 1.21621 1.01211 0.92388 1.02188 1.22111 1.01430 1.00348 0.96732 1.20616 0.95682 0.88136 0.96746 1.66057 1.13671 1.37415 1.02032 1.29400 1.01889 0.92897 1.01411 1.84191 1.45091 1.13298 1.12773 1.25210 1.14207 0.99343 1.03914 1.16965 0.86022 0.79164 0.79111 1.90755 1.14517 1.68742 1.70703 1.48174 1.09153 1.35494 1.38858 1.21663 0.96079 0.88150 0.94174 1.21790 0.99146 0.94621 0.99363 1.18595 0.91571 0.93201 0.93740 1.21556 1.18799 0.95799 1.20798 0.92885 1.25663 0.95614 1.02054 0.94956 1.69966 1.29003 1.32122 1.24288 0.85708 0.79219 0.80387 0.77236 1.20642 1.21113 1.19215 1.21873 0.99815 0.93857 0.99724 1.21891 0.78053 0.98079 1.02500 0.93088 0.90248 0.93188 0.92275 0.91058 0.92457 0.93522 0.90056 0.91845 0.73680 0.90972 0.91360 0.95812 0.90508 0.97628 0.93063 0.90840 0.93270 0.90405 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.26 71.98 0.59 -3.06 16 2 C 0.00 -0.04 0.76 -52.93 -0.04 -0.08 16 3 C -0.12 -2.24 7.82 71.98 0.56 -1.68 16 4 C -0.15 -3.51 7.36 71.98 0.53 -2.98 16 5 C 0.13 3.26 5.45 42.09 0.23 3.49 16 6 N -0.48 -10.85 9.52 -190.39 -1.81 -12.66 16 7 C 0.04 0.67 12.22 130.60 1.60 2.27 16 8 S 0.19 4.20 23.11 -56.49 -1.31 2.89 16 9 C -0.30 -8.75 3.95 23.88 0.09 -8.66 16 10 C 0.60 21.05 4.74 86.45 0.41 21.46 16 11 O -0.57 -23.29 14.62 -4.29 -0.06 -23.36 16 12 N -0.59 -20.48 2.05 -823.61 -1.69 -22.16 16 13 C 0.12 4.77 6.42 86.36 0.55 5.33 16 14 C -0.11 -5.09 5.16 30.68 0.16 -4.93 16 15 C 0.05 2.22 2.06 -11.50 -0.02 2.19 16 16 C -0.53 -27.88 8.56 25.60 0.22 -27.66 16 17 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 18 C 0.02 0.85 5.30 84.66 0.45 1.30 16 19 N -0.91 -50.90 11.30 21.45 0.24 -50.66 16 20 Si 0.95 42.45 29.54 68.60 2.03 44.48 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 C -0.11 -4.25 5.30 30.67 0.16 -4.09 16 25 C 0.12 3.66 5.14 86.36 0.44 4.11 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.58 5.24 -2.39 -0.01 1.56 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.06 1.13 8.08 -2.38 -0.02 1.11 16 32 H 0.05 1.32 4.69 -2.39 -0.01 1.31 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 35 H 0.25 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.07 2.91 7.03 -2.39 -0.02 2.90 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 4.01 6.03 -2.39 -0.01 4.00 16 40 H 0.01 0.28 8.14 -2.38 -0.02 0.27 16 41 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 45 H 0.09 2.38 6.24 -2.39 -0.01 2.36 16 Total: -1.00 -63.73 358.98 4.33 -59.40 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.98 Total: 15.08 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 5.94 Total: -13.01 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -3.26 Total: -85.48 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.31 Total: 2.89 kcal Total: -63.73 4.33 -59.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334202591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.531 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds