Wall clock time and date at job start Tue Mar 31 2020 13:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47310 * 2 1 4 4 C 1.53004 * 109.47118 * 120.00014 * 2 1 3 5 5 C 1.50695 * 109.47456 * 239.99944 * 2 1 3 6 6 N 1.29438 * 124.80463 * 59.69757 * 5 2 1 7 7 C 1.30941 * 117.36430 * 179.77205 * 6 5 2 8 8 C 1.35661 * 114.19334 * 0.51550 * 7 6 5 9 9 C 1.46680 * 126.13468 * 179.73475 * 8 7 6 10 10 O 1.21685 * 119.99783 * 29.45686 * 9 8 7 11 11 N 1.34774 * 120.00127 * 209.46184 * 9 8 7 12 12 C 1.46928 * 120.63233 * 6.11615 * 11 9 8 13 13 C 1.53619 * 108.54487 * 126.37131 * 12 11 9 14 14 C 1.53036 * 109.24314 * 54.85721 * 13 12 11 15 15 C 1.50705 * 109.44893 * 178.49968 * 14 13 12 16 16 H 1.08002 * 119.99881 * 120.05953 * 15 14 13 17 17 C 1.37876 * 119.99667 * 300.05791 * 15 14 13 18 18 N 1.31517 * 119.99699 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00058 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47084 * 89.99993 * 19 17 15 21 21 H 1.48501 * 109.46862 * 209.99642 * 19 17 15 22 22 H 1.48491 * 109.47288 * 329.99458 * 19 17 15 23 23 C 1.53049 * 109.53752 * 298.50901 * 14 13 12 24 24 C 1.46927 * 120.63062 * 186.39895 * 11 9 8 25 25 S 1.70957 * 124.80881 * 240.00307 * 5 2 1 26 26 H 1.09001 * 109.47085 * 60.00020 * 1 2 3 27 27 H 1.08999 * 109.47197 * 300.00091 * 1 2 3 28 28 H 1.08994 * 109.47086 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47065 * 59.99828 * 3 2 1 30 30 H 1.09000 * 109.47356 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47408 * 299.99801 * 3 2 1 32 32 H 1.08994 * 109.46936 * 60.00161 * 4 2 1 33 33 H 1.09000 * 109.47150 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.47001 * 300.00015 * 4 2 1 35 35 H 1.08004 * 122.90057 * 180.24608 * 7 6 5 36 36 H 1.09000 * 109.58542 * 246.20470 * 12 11 9 37 37 H 1.09006 * 109.58185 * 6.62402 * 12 11 9 38 38 H 1.09000 * 109.63260 * 294.86085 * 13 12 11 39 39 H 1.09004 * 109.43166 * 174.72846 * 13 12 11 40 40 H 1.08994 * 109.45949 * 58.52999 * 14 13 12 41 41 H 0.97002 * 119.99929 * 180.02562 * 18 17 15 42 42 H 1.08993 * 109.49497 * 301.41795 * 23 14 13 43 43 H 1.08992 * 109.49488 * 181.31360 * 23 14 13 44 44 H 1.08996 * 109.58655 * 353.36546 * 24 11 9 45 45 H 1.08994 * 109.59010 * 113.65333 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0323 -0.7104 -1.2304 6 7 1.7731 -0.3534 -2.4472 7 6 2.2903 -1.0753 -3.4095 8 6 3.0330 -2.1256 -2.9787 9 6 3.7238 -3.1024 -3.8274 10 8 4.1269 -2.7748 -4.9278 11 7 3.9118 -4.3627 -3.3886 12 6 3.3162 -4.8113 -2.1226 13 6 2.5029 -6.0868 -2.3902 14 6 3.4016 -7.1259 -3.0645 15 6 2.6182 -8.3924 -3.2958 16 1 2.4869 -8.7705 -4.2989 17 6 2.0692 -9.0683 -2.2268 18 7 1.3852 -10.1733 -2.4288 19 14 2.2959 -8.4139 -0.4920 20 1 1.1807 -7.4906 -0.1616 21 1 2.3010 -9.5471 0.4677 22 1 3.5859 -7.6839 -0.4028 23 6 3.8970 -6.5806 -4.4060 24 6 4.7216 -5.3124 -4.1639 25 16 3.0193 -2.1062 -1.2167 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 -1.7489 1.2492 33 1 3.1299 -0.7209 1.2495 34 1 1.6766 -0.2074 2.1392 35 1 2.1353 -0.8561 -4.4556 36 1 4.1060 -5.0228 -1.4018 37 1 2.6604 -4.0334 -1.7314 38 1 1.6617 -5.8545 -3.0434 39 1 2.1315 -6.4849 -1.4459 40 1 4.2555 -7.3393 -2.4216 41 1 0.9986 -10.6487 -1.6767 42 1 3.0428 -6.3437 -5.0401 43 1 4.5181 -7.3302 -4.8963 44 1 4.9933 -4.8653 -5.1201 45 1 5.6249 -5.5620 -3.6074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334965845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:42 Heat of formation + Delta-G solvation = 1.507657 kcal Electronic energy + Delta-G solvation = -25566.334740 eV Core-core repulsion = 22096.351305 eV Total energy + Delta-G solvation = -3469.983435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38920 -39.60538 -37.26680 -36.77042 -33.67816 -31.80979 -30.98875 -29.85383 -27.80418 -27.59985 -26.86865 -25.76862 -23.32722 -22.85306 -21.60431 -20.84703 -19.48360 -18.25936 -18.17493 -16.88664 -16.49109 -16.21446 -15.48753 -15.13965 -14.86933 -14.69987 -14.58278 -14.10927 -13.83053 -13.74560 -13.46052 -13.08969 -12.79757 -12.75378 -12.61145 -12.46571 -12.23814 -12.03392 -12.02956 -11.94148 -11.55740 -11.38415 -11.31169 -11.11330 -10.85108 -10.37874 -10.26562 -9.97827 -9.83633 -9.70172 -9.48198 -9.33020 -9.15860 -8.90230 -8.61466 -8.32668 -6.14857 -4.14476 0.19447 1.03511 1.47916 2.43972 2.99736 3.15860 3.24515 3.25974 3.31213 3.72156 4.31221 4.38224 4.52107 4.54051 4.69370 4.99622 5.05355 5.18458 5.20235 5.24008 5.26838 5.39754 5.48703 5.50256 5.52411 5.53569 5.58183 5.71226 5.72707 5.73317 5.86879 5.88792 5.94648 6.04512 6.07544 6.20095 6.50445 6.56260 6.66717 6.79371 7.09414 7.39682 7.45454 7.55751 7.66762 8.16835 8.44368 8.89685 9.46631 10.98528 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.004184 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.671654 B = 6690.406543 C = 8021.909985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.008 3.992 3 C -0.134 4.134 4 C -0.158 4.158 5 C 0.048 3.952 6 N -0.476 5.476 7 C 0.113 3.887 8 C -0.293 4.293 9 C 0.594 3.406 10 O -0.536 6.536 11 N -0.595 5.595 12 C 0.091 3.909 13 C -0.131 4.131 14 C 0.015 3.985 15 C -0.514 4.514 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.882 3.118 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.264 1.264 23 C -0.113 4.113 24 C 0.111 3.889 25 S 0.192 5.808 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.184 0.816 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.264 0.736 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 20.726 8.197 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.005 3.995 3 C -0.192 4.192 4 C -0.216 4.216 5 C -0.227 4.227 6 N -0.189 5.189 7 C -0.043 4.043 8 C -0.417 4.417 9 C 0.380 3.620 10 O -0.415 6.415 11 N -0.327 5.327 12 C -0.033 4.033 13 C -0.169 4.169 14 C -0.004 4.004 15 C -0.551 4.551 16 H 0.093 0.907 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.713 3.287 20 H -0.205 1.205 21 H -0.223 1.223 22 H -0.189 1.189 23 C -0.152 4.152 24 C -0.011 4.011 25 S 0.452 5.548 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.201 0.799 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.420 20.558 8.427 22.349 hybrid contribution -0.265 0.296 0.108 0.412 sum 2.156 20.854 8.536 22.636 Atomic orbital electron populations 1.21851 0.91999 1.02680 1.02870 1.19284 0.96846 0.95238 0.88172 1.21838 1.01165 0.93347 1.02883 1.22074 1.01775 1.00992 0.96755 1.27745 1.00223 0.97840 0.96872 1.66118 1.23904 1.30453 0.98448 1.22072 0.92886 0.89205 1.00183 1.25815 1.13008 1.05808 0.97030 1.16773 0.78923 0.81170 0.85160 1.90799 1.51568 1.78986 1.20130 1.47993 1.50677 1.10373 1.23624 1.22396 0.97653 0.98372 0.84864 1.22452 0.99468 0.93715 1.01262 1.19146 0.95040 0.93663 0.92563 1.21031 1.32737 1.05814 0.95564 0.90723 1.25045 0.94612 0.94686 0.98923 1.69896 1.35189 1.17058 1.31551 0.86914 0.79044 0.77835 0.84940 1.20474 1.22294 1.18915 1.21837 0.99231 0.94362 0.99729 1.21852 0.93188 0.89843 0.96188 1.84209 1.46873 1.22403 1.01334 0.91332 0.91503 0.92267 0.91506 0.92483 0.91356 0.91543 0.91729 0.90438 0.79898 0.91079 0.90808 0.91426 0.92186 0.95250 0.92595 0.92092 0.91009 0.89483 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.45 37.15 0.31 -0.78 16 2 C 0.01 0.07 0.99 -155.67 -0.15 -0.08 16 3 C -0.13 -1.01 8.45 37.16 0.31 -0.69 16 4 C -0.16 -1.11 7.53 37.16 0.28 -0.83 16 5 C 0.05 0.55 5.78 -13.29 -0.08 0.47 16 6 N -0.48 -6.26 10.49 -11.50 -0.12 -6.38 16 7 C 0.11 1.58 11.21 -18.85 -0.21 1.37 16 8 C -0.29 -4.34 5.78 -37.10 -0.21 -4.55 16 9 C 0.59 10.21 7.60 -12.85 -0.10 10.11 16 10 O -0.54 -10.45 16.41 5.20 0.09 -10.36 16 11 N -0.59 -10.09 2.97 -174.05 -0.52 -10.61 16 12 C 0.09 1.50 5.59 -3.49 -0.02 1.48 16 13 C -0.13 -2.63 4.86 -26.39 -0.13 -2.76 16 14 C 0.01 0.33 1.65 -91.73 -0.15 0.17 16 15 C -0.51 -13.81 9.14 -34.44 -0.31 -14.12 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 18 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 19 Si 0.88 20.63 24.38 -169.99 -4.14 16.48 16 20 H -0.28 -6.25 6.86 56.52 0.39 -5.86 16 21 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.26 -5.75 6.53 56.52 0.37 -5.38 16 23 C -0.11 -2.16 5.30 -26.60 -0.14 -2.30 16 24 C 0.11 1.85 6.44 -3.71 -0.02 1.82 16 25 S 0.19 2.30 17.78 -107.50 -1.91 0.39 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16 33 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.18 2.35 8.06 -52.48 -0.42 1.93 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.11 3.92 -25.78 -0.10 1.01 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.06 1.26 3.24 -51.93 -0.17 1.09 16 40 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.09 1.44 7.00 -51.93 -0.36 1.07 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -31.13 359.96 -8.06 -39.19 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.93 Total: 0.76 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.72 Total: -8.87 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.14 Total: -43.02 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.14 Total: 16.48 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.91 Total: 0.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.13 -8.06 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334965845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.699 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds