Wall clock time and date at job start Tue Mar 31 2020 13:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47310 * 2 1 4 4 C 1.53004 * 109.47118 * 120.00014 * 2 1 3 5 5 C 1.50695 * 109.47456 * 239.99944 * 2 1 3 6 6 N 1.29438 * 124.80463 * 59.69757 * 5 2 1 7 7 C 1.30941 * 117.36430 * 179.77205 * 6 5 2 8 8 C 1.35661 * 114.19334 * 0.51550 * 7 6 5 9 9 C 1.46680 * 126.13468 * 179.73475 * 8 7 6 10 10 O 1.21685 * 119.99783 * 29.45686 * 9 8 7 11 11 N 1.34774 * 120.00127 * 209.46184 * 9 8 7 12 12 C 1.46928 * 120.63233 * 6.11615 * 11 9 8 13 13 C 1.53619 * 108.54487 * 126.37131 * 12 11 9 14 14 C 1.53036 * 109.24314 * 54.85721 * 13 12 11 15 15 C 1.50705 * 109.44893 * 178.49968 * 14 13 12 16 16 H 1.08002 * 119.99881 * 120.05953 * 15 14 13 17 17 C 1.37876 * 119.99667 * 300.05791 * 15 14 13 18 18 N 1.31517 * 119.99699 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00058 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47084 * 89.99993 * 19 17 15 21 21 H 1.48501 * 109.46862 * 209.99642 * 19 17 15 22 22 H 1.48491 * 109.47288 * 329.99458 * 19 17 15 23 23 C 1.53049 * 109.53752 * 298.50901 * 14 13 12 24 24 C 1.46927 * 120.63062 * 186.39895 * 11 9 8 25 25 S 1.70957 * 124.80881 * 240.00307 * 5 2 1 26 26 H 1.09001 * 109.47085 * 60.00020 * 1 2 3 27 27 H 1.08999 * 109.47197 * 300.00091 * 1 2 3 28 28 H 1.08994 * 109.47086 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47065 * 59.99828 * 3 2 1 30 30 H 1.09000 * 109.47356 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47408 * 299.99801 * 3 2 1 32 32 H 1.08994 * 109.46936 * 60.00161 * 4 2 1 33 33 H 1.09000 * 109.47150 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.47001 * 300.00015 * 4 2 1 35 35 H 1.08004 * 122.90057 * 180.24608 * 7 6 5 36 36 H 1.09000 * 109.58542 * 246.20470 * 12 11 9 37 37 H 1.09006 * 109.58185 * 6.62402 * 12 11 9 38 38 H 1.09000 * 109.63260 * 294.86085 * 13 12 11 39 39 H 1.09004 * 109.43166 * 174.72846 * 13 12 11 40 40 H 1.08994 * 109.45949 * 58.52999 * 14 13 12 41 41 H 0.97002 * 119.99929 * 180.02562 * 18 17 15 42 42 H 1.08993 * 109.49497 * 301.41795 * 23 14 13 43 43 H 1.08992 * 109.49488 * 181.31360 * 23 14 13 44 44 H 1.08996 * 109.58655 * 353.36546 * 24 11 9 45 45 H 1.08994 * 109.59010 * 113.65333 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0323 -0.7104 -1.2304 6 7 1.7731 -0.3534 -2.4472 7 6 2.2903 -1.0753 -3.4095 8 6 3.0330 -2.1256 -2.9787 9 6 3.7238 -3.1024 -3.8274 10 8 4.1269 -2.7748 -4.9278 11 7 3.9118 -4.3627 -3.3886 12 6 3.3162 -4.8113 -2.1226 13 6 2.5029 -6.0868 -2.3902 14 6 3.4016 -7.1259 -3.0645 15 6 2.6182 -8.3924 -3.2958 16 1 2.4869 -8.7705 -4.2989 17 6 2.0692 -9.0683 -2.2268 18 7 1.3852 -10.1733 -2.4288 19 14 2.2959 -8.4139 -0.4920 20 1 1.1807 -7.4906 -0.1616 21 1 2.3010 -9.5471 0.4677 22 1 3.5859 -7.6839 -0.4028 23 6 3.8970 -6.5806 -4.4060 24 6 4.7216 -5.3124 -4.1639 25 16 3.0193 -2.1062 -1.2167 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 -1.7489 1.2492 33 1 3.1299 -0.7209 1.2495 34 1 1.6766 -0.2074 2.1392 35 1 2.1353 -0.8561 -4.4556 36 1 4.1060 -5.0228 -1.4018 37 1 2.6604 -4.0334 -1.7314 38 1 1.6617 -5.8545 -3.0434 39 1 2.1315 -6.4849 -1.4459 40 1 4.2555 -7.3393 -2.4216 41 1 0.9986 -10.6487 -1.6767 42 1 3.0428 -6.3437 -5.0401 43 1 4.5181 -7.3302 -4.8963 44 1 4.9933 -4.8653 -5.1201 45 1 5.6249 -5.5620 -3.6074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334965845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:41 Heat of formation + Delta-G solvation = -17.912313 kcal Electronic energy + Delta-G solvation = -25567.176853 eV Core-core repulsion = 22096.351305 eV Total energy + Delta-G solvation = -3470.825548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56353 -40.74623 -38.66033 -37.59496 -35.42369 -33.59711 -32.46527 -31.01913 -28.46501 -28.33410 -28.18385 -26.93322 -24.79133 -24.42999 -22.81492 -21.87481 -20.91738 -19.47686 -19.17677 -18.83352 -17.74395 -17.40710 -16.76089 -16.44103 -16.14720 -15.75610 -15.53927 -15.29793 -15.10662 -14.88881 -14.63715 -14.57467 -14.25937 -14.18196 -13.85932 -13.56183 -13.21074 -13.09030 -12.87260 -12.73456 -12.61174 -12.41472 -12.36877 -12.13836 -12.00710 -11.96882 -11.91819 -11.54598 -11.37665 -11.17322 -11.06387 -10.71853 -10.67956 -10.34150 -9.93760 -9.71924 -8.28243 -6.33802 -0.82509 0.04957 0.48515 1.31394 1.34144 1.38800 1.49385 1.74717 2.02807 2.34635 2.88660 3.06273 3.35590 3.68842 3.79098 3.92952 3.96366 4.03277 4.07250 4.16758 4.22692 4.29711 4.34830 4.43925 4.61906 4.69456 4.72846 4.74276 4.85034 4.87711 4.89628 4.94356 4.96206 4.97132 5.04834 5.06213 5.24644 5.30393 5.35894 5.38287 5.47901 5.65407 5.69202 6.16782 6.30905 6.53780 6.73311 6.85789 7.31732 8.88892 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.004184 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.671654 B = 6690.406543 C = 8021.909985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.004 3.996 3 C -0.131 4.131 4 C -0.159 4.159 5 C 0.057 3.943 6 N -0.493 5.493 7 C 0.117 3.883 8 C -0.328 4.328 9 C 0.595 3.405 10 O -0.567 6.567 11 N -0.599 5.599 12 C 0.097 3.903 13 C -0.129 4.129 14 C 0.015 3.985 15 C -0.522 4.522 16 H 0.027 0.973 17 C 0.006 3.994 18 N -0.954 5.954 19 Si 0.945 3.055 20 H -0.261 1.261 21 H -0.301 1.301 22 H -0.229 1.229 23 C -0.108 4.108 24 C 0.118 3.882 25 S 0.230 5.770 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.185 0.815 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.040 0.960 41 H 0.265 0.735 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 23.399 11.606 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 C -0.190 4.190 4 C -0.217 4.217 5 C -0.217 4.217 6 N -0.207 5.207 7 C -0.041 4.041 8 C -0.452 4.452 9 C 0.383 3.617 10 O -0.449 6.449 11 N -0.330 5.330 12 C -0.026 4.026 13 C -0.167 4.167 14 C -0.004 4.004 15 C -0.560 4.560 16 H 0.045 0.955 17 C -0.190 4.190 18 N -0.594 5.594 19 Si 0.771 3.229 20 H -0.186 1.186 21 H -0.229 1.229 22 H -0.152 1.152 23 C -0.146 4.146 24 C -0.004 4.004 25 S 0.490 5.510 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.201 0.799 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.329 23.246 11.834 26.296 hybrid contribution -0.620 -0.528 -1.034 1.316 sum 2.710 22.717 10.800 25.299 Atomic orbital electron populations 1.21860 0.91537 1.02417 1.03461 1.19551 0.97166 0.95786 0.87464 1.21838 1.01144 0.92555 1.03444 1.22127 1.02088 1.00911 0.96605 1.28442 0.98604 0.97272 0.97391 1.66194 1.24672 1.30864 0.98967 1.22207 0.92344 0.88887 1.00711 1.25660 1.14483 1.06070 0.98971 1.17025 0.78356 0.81420 0.84929 1.90773 1.52913 1.79566 1.21599 1.48045 1.50703 1.10423 1.23827 1.22399 0.98225 0.96915 0.85070 1.22286 0.99030 0.94980 1.00378 1.19104 0.94875 0.92050 0.94347 1.21354 1.33094 1.07934 0.93591 0.95481 1.26015 0.94129 0.94732 1.04131 1.70076 1.37116 1.19100 1.33091 0.85892 0.81136 0.77580 0.78324 1.18639 1.22892 1.15246 1.21720 0.98950 0.95859 0.98050 1.21778 0.93354 0.88288 0.96958 1.83894 1.46267 1.22406 0.98418 0.92700 0.89020 0.92942 0.89054 0.92510 0.92740 0.91756 0.91311 0.88140 0.79853 0.88523 0.89098 0.93152 0.92421 0.94213 0.92615 0.94172 0.90891 0.89440 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.45 71.98 0.61 -1.18 16 2 C 0.00 0.06 0.99 -52.93 -0.05 0.01 16 3 C -0.13 -1.57 8.45 71.98 0.61 -0.96 16 4 C -0.16 -1.58 7.53 71.98 0.54 -1.04 16 5 C 0.06 1.17 5.78 88.46 0.51 1.68 16 6 N -0.49 -12.26 10.49 -190.30 -2.00 -14.26 16 7 C 0.12 3.16 11.21 84.23 0.94 4.10 16 8 C -0.33 -9.23 5.78 23.88 0.14 -9.10 16 9 C 0.59 19.81 7.60 86.45 0.66 20.46 16 10 O -0.57 -21.99 16.41 -4.30 -0.07 -22.06 16 11 N -0.60 -19.17 2.97 -822.78 -2.44 -21.61 16 12 C 0.10 2.90 5.59 86.51 0.48 3.38 16 13 C -0.13 -4.93 4.86 30.81 0.15 -4.78 16 14 C 0.02 0.65 1.65 -11.51 -0.02 0.63 16 15 C -0.52 -28.90 9.14 25.60 0.23 -28.66 16 16 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 17 C 0.01 0.36 5.45 84.65 0.46 0.83 16 18 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 19 Si 0.95 41.39 24.38 68.60 1.67 43.06 16 20 H -0.26 -10.65 6.86 99.48 0.68 -9.97 16 21 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.23 -8.71 6.53 99.48 0.65 -8.06 16 23 C -0.11 -4.10 5.30 30.68 0.16 -3.94 16 24 C 0.12 3.74 6.44 86.36 0.56 4.29 16 25 S 0.23 4.81 17.78 -56.49 -1.00 3.81 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.69 7.92 -2.39 -0.02 0.67 16 33 H 0.07 0.64 7.92 -2.39 -0.02 0.62 16 34 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.18 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.09 2.42 3.92 -19.01 -0.07 2.35 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.24 3.24 -2.39 -0.01 2.24 16 40 H 0.04 1.65 7.20 -2.39 -0.02 1.63 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.09 2.81 7.00 -2.39 -0.02 2.79 16 45 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -70.39 359.96 3.28 -67.11 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.83 Total: 16.80 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 5.98 Total: -14.28 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -4.14 Total: -94.45 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.07 Total: -22.06 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.67 Total: 43.06 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.00 Total: 3.81 kcal Total: -70.39 3.28 -67.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334965845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.199 kcal (2) G-P(sol) polarization free energy of solvation -70.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds