Wall clock time and date at job start Tue Mar 31 2020 13:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47179 * 2 1 4 4 C 1.52999 * 109.47198 * 59.99955 * 3 2 1 5 5 C 1.53005 * 109.47045 * 299.99964 * 3 2 1 6 6 C 1.52998 * 109.47179 * 179.97438 * 3 2 1 7 7 H 1.08999 * 109.55835 * 59.79058 * 6 3 2 8 8 C 1.53141 * 109.55740 * 179.97438 * 6 3 2 9 9 C 1.52981 * 109.44880 * 190.62125 * 8 6 3 10 10 C 1.52339 * 108.75698 * 308.46761 * 9 8 6 11 11 N 1.32175 * 123.46181 * 197.70900 * 10 9 8 12 12 C 1.29891 * 117.97949 * 179.97438 * 11 10 9 13 13 N 1.37924 * 125.45836 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99890 * 0.03018 * 13 12 11 15 15 O 1.21853 * 120.00317 * 359.97438 * 14 13 12 16 16 C 1.41238 * 119.99768 * 179.97438 * 14 13 12 17 17 H 1.08002 * 120.00317 * 0.02562 * 16 14 13 18 18 C 1.40153 * 119.99978 * 179.71998 * 16 14 13 19 19 N 1.30624 * 119.99995 * 0.27847 * 18 16 14 20 20 Si 1.86798 * 120.00307 * 180.27638 * 18 16 14 21 21 H 1.48506 * 109.46985 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47563 * 120.00214 * 20 18 16 23 23 H 1.48506 * 109.47035 * 240.00454 * 20 18 16 24 24 S 1.76061 * 109.08162 * 0.26606 * 12 11 10 25 25 C 1.35315 * 122.37063 * 17.67971 * 10 9 8 26 26 C 1.51073 * 125.20125 * 0.06238 * 25 10 9 27 27 H 1.08996 * 109.47218 * 60.00197 * 1 2 3 28 28 H 1.09010 * 109.46843 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47011 * 299.99778 * 1 2 3 30 30 H 1.09000 * 109.47175 * 239.99697 * 2 1 3 31 31 H 1.09003 * 109.47320 * 120.00476 * 2 1 3 32 32 H 1.08999 * 109.47067 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47277 * 300.00580 * 4 3 2 34 34 H 1.09006 * 109.47053 * 60.00109 * 4 3 2 35 35 H 1.09000 * 109.46916 * 300.00063 * 5 3 2 36 36 H 1.09002 * 109.46617 * 59.99918 * 5 3 2 37 37 H 1.08999 * 109.47067 * 180.02562 * 5 3 2 38 38 H 1.09001 * 109.47469 * 70.63124 * 8 6 3 39 39 H 1.08994 * 109.48004 * 310.61937 * 8 6 3 40 40 H 1.08992 * 109.58837 * 188.68787 * 9 8 6 41 41 H 1.08993 * 109.58884 * 68.24819 * 9 8 6 42 42 H 0.97000 * 119.99587 * 180.02562 * 13 12 11 43 43 H 0.97005 * 119.99999 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.61673 * 256.26434 * 26 25 10 45 45 H 1.09003 * 109.76005 * 135.82343 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4425 0.0006 7 1 3.9352 0.9255 -0.8867 8 6 4.0826 2.8855 0.0000 9 6 5.5892 2.8907 -0.2652 10 6 6.2608 1.9277 0.7055 11 7 7.5555 1.9457 0.9713 12 6 8.0159 1.0748 1.8179 13 7 9.3340 0.9555 2.2058 14 6 10.2645 1.7864 1.6957 15 8 9.9413 2.6428 0.8913 16 6 11.6142 1.6645 2.0934 17 1 11.9008 0.9052 2.8060 18 6 12.5828 2.5247 1.5584 19 7 12.2363 3.4427 0.6962 20 14 14.3692 2.3586 2.0785 21 1 14.4983 1.2507 3.0590 22 1 15.2065 2.0662 0.8874 23 1 14.8229 3.6271 2.7033 24 16 6.6891 0.0657 2.3845 25 6 5.5713 0.9740 1.3734 26 6 4.0847 0.7318 1.2571 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8937 3.1912 1.2494 33 1 0.4400 2.1637 1.2493 34 1 1.8934 1.6499 2.1392 35 1 1.8933 1.6498 -2.1392 36 1 0.4400 2.1637 -1.2492 37 1 1.8937 3.1912 -1.2495 38 1 3.8827 3.3426 0.9691 39 1 3.5742 3.4515 -0.7805 40 1 5.9833 3.8957 -0.1144 41 1 5.7811 2.5704 -1.2892 42 1 9.5913 0.2735 2.8459 43 1 12.9067 4.0384 0.3262 44 1 3.5790 1.1312 2.1362 45 1 3.8907 -0.3379 1.1778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345412969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:31 Heat of formation + Delta-G solvation = -17.116639 kcal Electronic energy + Delta-G solvation = -25067.834775 eV Core-core repulsion = 21597.043731 eV Total energy + Delta-G solvation = -3470.791045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07991 -38.76029 -37.33329 -34.73454 -33.22977 -32.36217 -30.72006 -30.40410 -27.87106 -27.45536 -26.71571 -24.83694 -23.27745 -22.98709 -21.58561 -19.91691 -18.61484 -18.40794 -17.48420 -16.66258 -15.74987 -15.58331 -15.20884 -14.93526 -14.57493 -14.44878 -14.14927 -13.90196 -13.73843 -13.45651 -12.93974 -12.66219 -12.56730 -12.44405 -12.36773 -12.14651 -11.91207 -11.72718 -11.56621 -11.40043 -11.35896 -11.22804 -11.03214 -10.87627 -10.70850 -10.67018 -10.34521 -10.33005 -10.11407 -9.91723 -9.41828 -8.90036 -8.75603 -8.51872 -7.61248 -7.01943 -6.40453 -4.96138 1.52185 1.72202 2.34373 3.02280 3.10783 3.15519 3.63034 3.92154 4.20985 4.42582 4.49790 4.60523 4.66923 4.98741 5.07073 5.11588 5.20993 5.28176 5.32169 5.38585 5.49626 5.54121 5.57969 5.69765 5.73010 5.74153 5.78190 5.80059 5.82192 5.88762 5.93033 5.99073 6.05999 6.08673 6.12619 6.24061 6.26684 6.38427 6.47611 6.53921 6.82412 7.18362 7.38224 7.83455 7.95149 8.64923 8.74322 9.20603 10.34374 10.54612 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033290 B = 0.002699 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.898676 B =10370.283921 C =10963.817140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.057 4.057 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.071 4.071 7 H 0.073 0.927 8 C -0.114 4.114 9 C -0.040 4.040 10 C 0.115 3.885 11 N -0.490 5.490 12 C 0.364 3.636 13 N -0.641 5.641 14 C 0.531 3.469 15 O -0.515 6.515 16 C -0.533 4.533 17 H 0.072 0.928 18 C 0.086 3.914 19 N -0.743 5.743 20 Si 0.916 3.084 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.273 1.273 24 S -0.022 6.022 25 C -0.274 4.274 26 C -0.020 4.020 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.402 0.598 43 H 0.274 0.726 44 H 0.072 0.928 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.434 -5.284 0.187 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.057 4.057 4 C -0.205 4.205 5 C -0.203 4.203 6 C -0.091 4.091 7 H 0.092 0.908 8 C -0.152 4.152 9 C -0.080 4.080 10 C -0.018 4.018 11 N -0.212 5.212 12 C -0.007 4.007 13 N -0.290 5.290 14 C 0.337 3.663 15 O -0.392 6.392 16 C -0.569 4.569 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.370 5.370 20 Si 0.740 3.260 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 S 0.228 5.772 25 C -0.397 4.397 26 C -0.059 4.059 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.237 0.763 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.125 -4.978 -0.017 19.762 hybrid contribution 0.829 -0.077 0.187 0.853 sum -18.296 -5.055 0.170 18.983 Atomic orbital electron populations 1.21894 0.96208 1.01215 1.01918 1.21619 0.95596 0.96020 1.02124 1.20532 0.94303 0.95184 0.95723 1.22047 1.00574 1.00605 0.97304 1.21992 1.00717 1.00536 0.97014 1.21219 0.93394 0.96360 0.98098 0.90811 1.21723 0.94670 0.96425 1.02333 1.20367 0.93199 0.97800 0.96617 1.20882 0.87265 0.95942 0.97722 1.66200 1.12445 1.24153 1.18398 1.24642 0.90735 0.91949 0.93417 1.44377 1.01848 1.37365 1.45456 1.17263 0.84831 0.81345 0.82868 1.90809 1.79579 1.34277 1.34543 1.19911 0.90992 1.18716 1.27291 0.90941 1.25767 1.00931 0.93664 0.93369 1.70021 1.34953 1.12286 1.19777 0.86170 0.81456 0.79115 0.79246 1.18495 1.19862 1.19861 1.84508 1.03301 1.39761 1.49610 1.25221 0.99574 1.05428 1.09473 1.20052 0.87820 0.99973 0.98076 0.92576 0.93226 0.92521 0.92065 0.91757 0.92320 0.92711 0.92318 0.92730 0.92590 0.92190 0.91495 0.90889 0.89939 0.90395 0.76264 0.91497 0.90937 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.21 37.16 0.34 -0.76 16 2 C -0.12 -0.95 4.67 -26.73 -0.12 -1.08 16 3 C -0.06 -0.50 0.35 -154.51 -0.05 -0.55 16 4 C -0.15 -1.24 7.45 37.16 0.28 -0.97 16 5 C -0.15 -1.16 7.80 37.16 0.29 -0.87 16 6 C -0.07 -0.78 1.55 -90.42 -0.14 -0.92 16 7 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 8 C -0.11 -1.35 4.37 -26.67 -0.12 -1.46 16 9 C -0.04 -0.64 6.29 -27.08 -0.17 -0.81 16 10 C 0.11 2.25 6.75 -82.67 -0.56 1.69 16 11 N -0.49 -11.93 8.61 -9.27 -0.08 -12.01 16 12 C 0.36 8.24 8.25 -88.18 -0.73 7.51 16 13 N -0.64 -14.93 5.35 -14.75 -0.08 -15.01 16 14 C 0.53 15.06 7.51 -15.12 -0.11 14.95 16 15 O -0.52 -16.75 13.51 5.05 0.07 -16.68 16 16 C -0.53 -14.44 9.28 -37.72 -0.35 -14.79 16 17 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 18 C 0.09 2.30 5.50 -17.35 -0.10 2.21 16 19 N -0.74 -21.52 11.72 55.56 0.65 -20.87 16 20 Si 0.92 19.19 29.56 -169.99 -5.02 14.17 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 24 S -0.02 -0.39 23.43 -107.50 -2.52 -2.91 16 25 C -0.27 -4.66 6.39 -35.17 -0.22 -4.89 16 26 C -0.02 -0.25 4.77 -27.57 -0.13 -0.38 16 27 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 28 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 6.71 -51.93 -0.35 0.20 16 32 H 0.06 0.51 6.69 -51.93 -0.35 0.16 16 33 H 0.05 0.41 6.43 -51.93 -0.33 0.07 16 34 H 0.06 0.51 6.21 -51.93 -0.32 0.19 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 37 H 0.06 0.47 6.22 -51.93 -0.32 0.15 16 38 H 0.07 0.81 7.00 -51.93 -0.36 0.44 16 39 H 0.07 0.73 5.94 -51.93 -0.31 0.42 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.40 7.74 8.77 -40.82 -0.36 7.38 16 43 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 44 H 0.07 0.87 5.95 -51.93 -0.31 0.56 16 45 H 0.07 0.79 7.09 -51.93 -0.37 0.42 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -33.87 354.89 -10.00 -43.87 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.46 Total: 5.21 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.90 Total: -1.11 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.49 Total: -47.89 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.07 Total: -16.68 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.52 Total: -2.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.87 -10.00 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345412969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.755 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds